Soil Organic Matter Decomposition Research Articles

Organic carbon decomposition temperature sensitivity positively correlates with the relative abundance of copiotrophic microbial taxa in cropland soils

Revealing the relationships between the temperature sensitivity of soil organic matter decomposition (Q10) and microbial communities is critical to predict ecosystem feedbacks to global warming. However, the relationships are still far from well understood, especially within the low latitude regions. To address this knowledge gap, soil samples were collected from >100 cropland sites in Southwest China, a region with highly diverse climatic and environmental conditions. The results showed that Q10 values substantially varied across the region, ranging from 1.85 to 6.81, with an average value of 3.27. They were significantly positively correlated with the contents of soil organic carbon, while negatively correlated with the ratios of soil dissolved organic carbon to total organic carbon content. This indicates that soils with high organic carbon contents are more vulnerable to global warming. Further analysis suggested that Q10 values were positively correlated with soil microbial respiration rates, fungal abundance, prokaryotic diversity, and the relative abundance of copiotrophic microbial lineages, but negatively correlated with the proportions of oligotrophic microbes and microbial co-occurrence network degree. The structural equation modeling analysis suggested that soil organic carbon and its quality, as well as microbial attributes were the main factors explaining the variation in Q10 values. The findings in this study highlight the crucial and complex roles of soil microbiome in determining ecosystem feedbacks to global warming.

The Role of Fertilization on Soil Carbon Sequestration in Bibliometric Analysis

The soil carbon pool is the largest and most dynamic carbon reservoir in terrestrial ecosystems. Fertilization, an important component of agricultural management, is a significant factor influencing soil carbon sequestration. This study analyzed literature from the Web of Science from 2008 to 2024 using CiteSpace. The results revealed a steady increase in publications on this topic, with a significant surge in the recent four years. The analysis highlighted key collaborations among countries, institutions, and authors, and identified main journal sources and seminal works in the research on the role of fertilization in soil carbon sequestrations. Keyword analysis indicated that current research hotspots include ‘soil organic carbon dynamics and organic matter decomposition’, ‘microbial community dynamics and carbon cycling’, and ‘agricultural management practices on carbon sequestration’. In the context of climate change, future research is likely to focus on enhancing sustainable agricultural practices, promoting biochar and resource utilization, and utilizing microbial communities to optimize soil carbon sequestration. This study provides a comprehensive overview of the role of fertilization in soil carbon sequestration, providing important insights for improving soil carbon sequestration strategies.

Variability of PAH Patterns in Upper Forest Soil (Sub)horizons—A Case Study From South‐Central Poland

ABSTRACTPolycyclic aromatic hydrocarbons (PAHs) are a class of contaminants characterized by their persistent and toxic nature. This study examines the variability in PAH distribution patterns in the upper layers of forest soils, focusing on the influence of different characteristics of individual soil (sub)horizons. A total of 130 samples were collected from five forest areas in south‐central Poland and analyzed for the 16 priority PAHs. Samples were taken from the organic fermentative‐humic (Ofh), humic (A), and humic‐eluvial (AE) (sub)horizons. The highest mean concentrations of total PAHs were found in the subhorizon‐Ofh (Ofh—1547 μg kg−1, A—1103 μg kg−1, AE—109 μg kg−1). The PAH content was significantly correlated with SOM content and pH, but this correlation was only significant in the horizon‐A. The percentage contributions of 3‐, 4‐, 5‐, and 6‐ring compounds to the total PAHs varied among the investigated soil (sub)horizons. The subhorizon‐Ofh had the highest percentage contribution of 6‐ring PAHs, 4‐ and 5‐ring PAHs were most prevalent in the horizon‐A, while 3‐ring compounds in the horizon‐AE. The variability in PAH patterns was also reflected in individual PAH ratios (BaA/BaA+Chr, IcdP/IcdP+BghiP), confirming the different behavior of 4‐, 5‐, and 6‐ring compounds in these (sub)horizons. This suggests that the retention of PAHs in the investigated (sub)horizons is influenced by several factors, including pH, degree of SOM decomposition, and mineral fraction, each to a different extent. Our findings reveal significant knowledge gaps regarding the behavior and accumulation of PAHs in soil (sub)horizons, underscoring the need for further research.

Environmental dependency of ectomycorrhizal fungi as soil organic matter oxidizers.

Forest soils play a pivotal role as global carbon (C) sinks, where the dynamics of soil organic matter (SOM) are significantly influenced by ectomycorrhizal (ECM) fungi. While correlations between ECM fungal community composition and soil C storage have been documented, the underlying mechanisms behind this remain unclear. Here, we conducted controlled experiments using pure cultures growing on naturally complex SOM extracts to test how ECM fungi regulate soil C and nitrogen (N) dynamics in response to varying inorganic N availability, in both monoculture and mixed culture conditions. ECM species dominant in N-poor soils exhibited superior SOM decay capabilities compared with those prevalent in N-rich soils. Inorganic N addition alleviated N limitation for ECM species but exacerbated their C limitation, reflected by reduced N compound decomposition and increased C compound decomposition. In mixed cultures without inorganic N supplementation, ECM species with greater SOM decomposition potential facilitated the persistence of less proficient SOM decomposers. Regardless of inorganic N availability, ECM species in mixed cultures demonstrated a preference for C over N, intensifying relatively labile C compound decomposition. This study highlights the complex interactions between ECM species, their nutritional requirements, the nutritional environment of their habitat, and their role in modifying SOM.

Reconciling Top‐Down and Bottom‐Up Estimates of Ecosystem Respiration in a Mature Eucalypt Forest

AbstractEcosystem respiration (Reco) arises from interacting autotrophic and heterotrophic processes constrained by distinct drivers. Here, we evaluated up‐scaling of observed components of Reco in a mature eucalypt forest in southeast Australia and assessed whether a land surface model adequately represented all the fluxes and their seasonal temperature responses. We measured respiration from soil (Rsoil), heterotrophic soil microbes (Rh), roots (Rroot), and stems (Rstem) in 2018–2019. Reco and its components were simulated using the CABLE–POP (Community Atmosphere‐Biosphere Land Exchange–Population Orders Physiology) land surface model, constrained by eddy covariance and chamber measurements and enabled with a newly implemented Dual Arrhenius and Michaelis‐Menten (DAMM) module for soil organic matter decomposition. Eddy‐covariance based Reco (Reco.eddy, 1,439 g C m−2 y−1) was slightly higher than the sum of the respiration components (Reco.sum, 1,295 g C m−2 y−1) and simulated Reco (1,297 g C m−2 y−1). The largest mean contribution to Reco was from Rsoil (64%) across seasons. The measured contributions of Rh (49%), Rroot (15%), and Rstem (22%) to Reco.sum were very close to model outputs of 46%, 11%, and 22%, respectively. The modeled Rh was highly correlated with measured Rh (R2 = 0.66, RMSE = 0.61), empirically validating the DAMM module. The apparent temperature sensitivities (Q10) of Reco were 2.22 for Reco.sum, 2.15 for Reco.eddy, and 1.57 for CABLE‐POP. This research demonstrated that bottom‐up respiration component measurements can be successfully scaled to eddy covariance‐based Reco and help to better constrain the magnitude of individual respiration components as well as their temperature sensitivities in land surface models.

Long‐Term Effects of Arable and Tree Cropping Systems on Soil Organic Carbon and Nitrogen Dynamics in a Tropical Agroecological Transition Zone

ABSTRACTContinuous cropping can affect soil carbon and nitrogen stocks and litter decomposition, but research on smallholder farms in Africa is limited. This study, conducted from 2020 to 2023 in Ghana's forest‐savanna transition zone, examined four cropping systems: continuous maize monocrop (M), maize rotated with legumes (ML), young cashew intercropped with maize or legumes (YCM/L), and mature cashew (MC). The objective was to assess the long‐term impact of the cropping systems on soil organic carbon (SOC), nitrogen (N) stocks, and soil organic matter (SOM) decomposition rates using the tea bag protocol. Results showed significant variability in SOC and N stocks across the systems. At a 0–15 cm depth, SOC in the MC and M systems was 160% and 149% higher than in the YCM/L system. At 15–30 cm, SOC in the M and MC systems was 86% and 132% higher than in YCM/L. Soil nitrogen stocks followed a similar trend, with MC and M systems showing 94%–199% higher values than YCM/L at both depths. SOM decomposition rates for green and rooibos tea in the MC and ML systems were statistically similar after 90 days of incubation (p > 0.05). This study, the first to use the tea bag protocol in Ghanaian soils, revealed that mature cashew and sustainable practices, such as adding maize stover, can enhance SOC and N stocks in highly weathered tropical soils. These findings underscore the potential for specific cropping systems to improve soil health on smallholder farms.

Deciphering the active bacteria involving glucose-triggered priming effect in soils with gradient N inputs

The soil priming effect, which refers to the alteration of soil organic matter (SOM) decomposition due to labile carbon (C) inputs, is widely acknowledged for its impact on C storage in terrestrial ecosystems. However, the impact of chronic nitrogen (N) fertilizer on soil priming effect, particularly in agroecological systems, remains unclear. Here, we utilized soils subjected to varying levels of N fertilization (0, 140, 280, 470, and 660 kg N ha−1 y−1), which were collected from a long-term experimental site. Enzyme activity related to C, N, and phosphorus (P) acquisition was measured using the fluorometric method. Additionally, DNA-based stable isotope probing with 13C-labeled glucose was conducted to explore the role of active bacterial communities (16S rRNA gene analysis) on the priming effect in soils with different N fertilization histories. Glucose addition enhanced the decomposition of native SOM and induced positive priming effects in all soils, which were amplified by the historical N application level. Activity of C-related enzymes essential for soil C decomposition increased following glucose addition, which was positively correlated with the soil priming effect. Active bacterial taxa, primarily Firmicutes, Actinobacteria, and Proteobacteria, were capable of assimilating exogenous glucose-C or native SOM-C. Notably, bacteria assimilating glucose exhibited higher abundance-weighted average ribosomal RNA gene operon copy number than those assimilating SOM, indicating the role of r-strategists in accelerating SOC turnover and increasing C loss. These findings highlight the role of active microbial community attributes on the soil priming effects. This study provides new insights into the intricate processes of C transformation in soils subjected to long-term N management in agroecosystems.

Soil Organic Carbon Dynamics: Drivers of Climate Change-induced Soil Organic Carbon Loss at Various Ecosystems

At roughly 2500 Peta gram (Pg) C, soil organic carbon (SOC) is the biggest carbon store in terrestrial ecosystems and is a crucial contributor to vital soil functions and ecosystem services, such as agricultural soil productivity. SOC stocks are in a dynamic equilibrium between C inputs, primarily from crop residues and organic manures, and C loss owing to decomposition and mineralization of soil organic matter (SOM) under long-term constant land management and environmental circumstances. In addition, the rate of C addition in native ecosystems is governed by the nature and productivity of the local flora, which is mostly influenced by climatic conditions. However, being a complex system, various factors, such as soil management and land-use change influence the soil C pool. Along with temperature gradients from temperate to tropical regions, SOC supplies were shown to be shrinking on a global and regional basis. This reflects the rates of SOM decomposition as a function of temperature, which fluctuates more rapidly than net primary production (NPP). SOM decomposition rates are also influenced by several parameters, including soil temperature and moisture, soil respiration and pH, and soil physical properties including texture and clay mineralogy. Nonetheless, increased temperatures as a result of climate change are thought to be the primary driver of accelerated decomposition, which results in considerable reductions in SOC supplies and sequestration. Furthermore, climatic change contributes to soil deterioration by increasing the mineralization of the SOC pool and causing desertification (irreversible expansion of desert landforms). Similarly, erosion is a degrading process that affects C dynamics and leads to terrestrial carbon loss through the breakdown of structural aggregates, as well as lower productivity in eroding areas due to a lack of soil nutrients. Thus, for an in-depth understanding of worldwide soil C dynamics and to provide support to C management and decision support systems to policymakers and land managers in the face of changing climates, comprehensive research on the influence of multiple climate-induced drivers on soil C is required.

Carbon sequestration through conservation tillage in sandy soils of arid and semi-arid climates: A meta-analysis

This meta-analysis assessed soil organic carbon (SOC) percent changes in sandy soils, transitioning from conventional tillage (CT) to conservational tillage (CST) in arid and semi-arid climates. High levels of SOC in sandy soils are difficult to attain especially when precipitation levels are very low, contributing to low biomass production, and increased decomposition of organic matter. While CT practices are known to reduce SOC through the breakdown of soil aggregates, accelerated decomposition of soil organic matter, and promote erosion, CST methods (i.e., mulch tillage, no tillage, reduced tillage, ridge tillage, etc.) offer the potential to preserve soil aggregates and increase SOC concentration. Analyzing 55 peer-reviewed publications in arid and semi-arid climates with ≥ 45 % sand content, this study compared SOC content between CST and CT over short- and long-term periods (349 paired observations). Results showed that CST increased SOC in sandy soils, with an estimated 12.74 ± 1.46 % increase. Specifically, reduced tillage (RdT), mulch tillage (MchT), and no tillage (NT) exhibited the highest increases of SOC by 18.94 ± 2.48 %, 11.45 ± 2.46 %, and 10.06 ± 2.46 %, respectively, compared to CT. Studies with durations of up to 15 years (n = 297) showed a progressive increase in SOC concentrations under CST; however, the long-term stability of the accrued carbon content in sandy soils of arid and semi-arid climates is still uncertain, as studies extending beyond 15 years (n = 52) did not demonstrate significant changes in SOC levels. CST significantly raised SOC concentrations in precipitation up to 600 mm, though no significant changes were observed for precipitation over 600 mm. In soils with over 56 % sand content, CST increased SOC by approximately 13 %. This study highlights both positive and limited impacts of CST practices for soil conservation and climate change mitigation, emphasizing their significance for both existing agricultural areas in arid regions and those in parts of the world where aridity is on the rise.

Microplastic contamination accelerates soil carbon loss through positive priming

The priming effect, i.e., the changes in soil organic matter (SOM) decomposition following fresh organic carbon (C) inputs is known to influence C storage in terrestrial ecosystems. Microplastics (particle size <5 mm) are ubiquitous in soils due to the increasing use and often inadequate end-of-life management of plastics. Conventional polyethylene and bio-degradable (PHBV) plastics contain large amounts of C within their molecular structure, which can be assimilated by microorganisms. However, the extent and direction of the potential priming effect induced by microplastics is unclear. As such, we added 14C-labeled glucose to investigate how background polyethylene and PHBV microplastics (1 %, w/w) affect SOM decomposition and its potential microbial mechanisms in a short-term. The cumulative CO2 emission in soil contaminated with PHBV was 42–53 % higher than under Polyethylene contaminated soil after 60-day incubation. Addition of glucose increased SOM decomposition and induced a positive priming effect, as a consequence, caused a negative net soil C balance (−59 to −132 μg C g−1 soil) regardless of microplastic types. K-strategists dominated in the PHBV-contaminated soils and induced 72 % higher positive priming effects as compared to Polyethylene-contaminated soils (160 vs. 92 μg C g−1 soil). This was attributed to the enhanced decomposition of recalcitrant SOM to acquire nitrogen. The stronger priming effect associated in PHBVs can be attributed to cooperative decomposition among fungi and bacteria, which metabolize more recalcitrant C in PHBV. Moreover, comparatively higher calorespirometric ratios, lower substrate use efficiency, and larger enzyme activity but shorter turnover time of enzymes indicated that soil contaminated with PHBV release more energy, and have a more efficient microbial catabolism and are more efficient in SOM decomposition and nutrient resource uptake. Overall, microplastics, (especially bio-degradable microplastics) can alter biogeochemical cycles with significant negative consequences for C sequestration via increasing SOM decomposition in agricultural soils and for regional and global C budgets.

Greenhouse gas emissions in response to tillage, nitrogen fertilization, and manure application in the tropics

Cultivation of maize (Zea mays L.) can emit significant greenhouse gases (GHGs) due to root respiration, soil organic matter decomposition, and fertilizer losses in a tropical environment. Our objective was to examine the effect of tillage (conventional tillage [CT], minimum tillage [MT], and no-tillage [NT]), N fertilization rate (0, 90, and 120 kg N ha−1), and manure application rate (0, 5, and 10 Mg ha−1) on CO2, N2O, and CH4 emissions under maize in two growing seasons (July-October 2018 and May-August 2019) in southwest Nigeria. We measured CO2, N2O, and CH4 fluxes using the static chamber method and soil temperature and water content weekly, global warming potential (GWP), maize yield, and greenhouse gas intensity (GHGI). The CO2 and N2O fluxes peaked immediately following planting, fertilization, and intense precipitation, with most fluxes concentrated at 2–6 wk after planting. The CH4 flux showed little change throughout the duration of the study. Cumulative CO2 and N2O fluxes were greater for CT and MT than NT, but cumulative CH4 flux was greater for MT than CT and NT. Higher N fertilization rate increased N2O and CH4 fluxes. The GWP was greater for CT than MT and NT and greater for 90 than 0 kg N ha−1. Maize yield was greater for MT than CT and NT and increased with higher N fertilization rate. The GHGI was lower for MT than CT and lower for 120 than 0 and 90 kg N ha−1. Because of overall lower maize yield, MT with reduced N ferilization rate in split applications may be needed to reduce GHG emissions while sustaining yield in the sandy soils of southwest Nigeria.

Soil net carbon balance depends on soil C: N: P stoichiometry

Exogenous carbon (C) input may induce priming effects, leading to the loss of soil organic C (SOC) by accelerating the decomposition of native soil organic matter (SOM), while also replenishing SOC through various mechanisms. However, the net C balance resulting from priming and replenishment of SOC under long-term nitrogen (N) fertilization and its stoichiometric regulation mechanisms remain largely undetermined. Soils subjected to 11 years of different N applications were used to investigate the net C balance following the addition of exogenous 13C-labeled glucose. The retention of glucose-derived C exceeded the loss of C caused by the priming effect, resulting in a positive net C balance, albeit attenuated by historical N application (ranging from 25.9 to 36.9 μg C mg−1 SOC). The application of increasing historical N levels resulted in a decrease in soil C:N imbalance and an increase in soil N:phosphorus (P) imbalance, as well as an increase in TERC:N and TERC:P. This suggested that the C and/or P limitations of soil microbial communities were intensified with increased N availability. Soil nutrient stoichiometric imbalance and available resource stoichiometry directly influenced the threshold element ratio, which in turn impacted glucose mineralization, subsequently affecting the net C balance. Collectively, our results provided solid evidence that labile C input could lead to a positive net C balance, which diminished with increased historical N application and was primarily regulated by soil C:N:P stoichiometry. This study highlights the significant implications for the soil C turnover and sequestration under long-term N application management in agroecosystems.

Positive soil priming effects are the rule at a global scale.

Priming effects of soil organic matter decomposition are critical to determine carbon budget and turnover in soil. Yet, the overall direction and intensity of soil priming remains under debate. A second-order meta-analysis was performed with 9296-paired observations from 363 primary studies to determine the intensity and general direction of priming effects depending on the compound type, nutrient availability, and ecosystem type. We found that fresh carbon inputs induced positive priming effects (+37%) in 97% of paired observations. Labile compounds induced larger priming effects (+73%) than complex organic compounds (+33%). Nutrients (e.g., N, P) added with organic compounds reduced the intensity of priming effects compared to compounds without N and P, reflecting "nutrient mining from soil organic matter" as one of the main mechanisms of priming effects. Notably, tundra, lakebeds, wetlands, and volcanic soils showed much larger priming effects (+125%) compared to soils under forests, croplands, and grasslands (+24…+32%). Our findings highlight that positive priming effects are predominant in most soils at a global scale. Optimizing strategies to incorporate fresh organic matter and nutrients is urgently needed to offset the priming-induced accelerated organic carbon turnover and possible losses.

Understanding the differential impact of PFOS and F-53B pollution on reed-mediated soil organic matter decomposition: Insights from rhizosphere priming effect

Plants affect soil microorganisms through the release of root exudates under pollution stress. This process may affect rhizosphere priming effect (RPE) and alter the rate of soil organic matter decomposition. However, the influence of plants on the decomposition of organic matter in soil subjected to pollution stress remains unclear. We studied the effects of exposure to perfluorooctanesulfonic (PFOS) and its alternative, chlorinated polyfluoroalkyl ether sulfonic (F-53B), at concentrations of 0.1 mg/kg and 50 mg/kg on the RPE of reed. We conducted our experiments in an artificial climate chamber and used the natural 13C tracer method to determine RPE. In the PFOS-exposed groups, the RPE was negative, with values of −11.45 mg C kg−1 soil d−1 in the low PFOS group and −8.04 mg C kg−1 soil d−1 in the high PFOS group. In contrast, in the F-53B-exposed groups, the RPE was positive, with values of 8.26 mg C kg−1 soil d−1 in the low F-53B group and 12.18 mg C kg−1 soil d−1 in the high F-53B group. Exposure of reeds to PFOS/F-53B stress resulted in differential effects on extracellular enzyme activities. The observed positive and negative RPE phenomena could be attributed to variations in extracellular enzyme activities. In conclusion, RPE responded differently under PFOS/F-53B exposure.

Variation of soil pore structure and predication of the related functions following land‐use conversion identified by multi‐scale X‐ray tomography

AbstractLand‐use conversion profoundly influences the soil pore structure, consequently modifying the soil functions. Investigating the variation of multiscale soil pore structure and their associated functions following land‐use change is critical for evaluating land management strategies. However, this topic has not yet been extensively explored in recent studies. In this study, the pore structure of soil following land‐use conversion was quantitatively investigated by multiscale X‐ray tomography. Intact soil aggregates and undisturbed soil cores were collected from paddy fields (PF) and from vegetable fields were converted from paddy fields for 5 years (VF‐5), 13 years (VF‐13), and 20 years (VF‐20), respectively. Results revealed that the connected porosity of both aggregates and soil cores was significantly increased after land‐use conversion. The isolated porosity of soil aggregates increased, while, conversely, it decreased for soil cores. The variance in pore structure was attributed to the development of new pores, including channels created by vegetable roots, fissures, earthworm holes, and packing pores resulting from the decomposition of soil organic matter and the rearrangement of soil particles. The altered pore structure influenced the soil exchangeability and reservation ability. For aggregates, the isolated porosity of PF and VF‐5 accounted for over 70% of the total imaged porosity. These aggregates displayed a larger water and carbon reservation ability, but limited exchangeability of air, water, and nutrients. The isolated porosity of VF‐13 and VF‐20 aggregates accounted for approximately 50% of the total imaged porosity, suggesting they could effectively balance the exchange and storage of air, water, and nutrients. As for soil cores, isolated pores became negligible (&lt;0.2%) following land‐use conversion, leading to the emergence of a drainable pore system suitable for vegetable plantation. These findings offer insights into the development of pore structures and the prediction of soil function variations at multiple scales, both of which are crucial for optimizing soil management protocols.

Bacteria-Like Gaiella Accelerate Soil Carbon Loss by Decomposing Organic Matter of Grazing Soils in Alpine Meadows on the Qinghai–Tibet Plateau

The alpine meadows of the Qinghai–Tibet Plateau have significant potential for storing soil carbon, which is important to global carbon sequestration. Grazing is a major threat to its potential for carbon sequestration. However, grazing poses a major threat to this potential by speeding up the breakdown of organic matter in the soil and releasing carbon, which may further lead to positive carbon-climate change feedback and threaten ecological security. Therefore, in order to accurately explore the driving mechanism and regulatory factors of soil organic matter decomposition in grazing alpine meadows on the Qinghai–Tibet Plateau, we took the grazing sample plots of typical alpine meadows as the research object and set up grazing intensities of different life cycles, aiming to explore the relationship and main regulatory factors of grazing on soil organic matter decomposition and soil microorganisms. The results show the following: (1) soil microorganisms, especially Acidobacteria and Acidobacteria, drove the decomposition of organic matter in the soil, thereby accelerating the release of soil carbon, which was not conducive to soil carbon sequestration in grassland; (2) the grazing triggering effect formed a positive feedback with soil microbial carbon release, accelerating the decomposition of organic matter and soil carbon loss; and (3) the grazing ban and light grazing were more conducive to slowing down soil organic matter decomposition and increasing soil carbon sequestration.

Linkage between temperature sensitivity of SOM decomposition and microbial communities depends on soil fractions.

The magnitude of terrestrial carbon (C)-climate feedback largely depends on the temperature sensitivity of soil organic matter (SOM) decomposition (Q10). However, our understanding of determinants of Q10 for SOM fractions such as particulate and mineral-associated organic matter (POM and MAOM, respectively) is still inadequate. Particularly, it remains unclear whether microbial effects on Q10 are fraction-dependent, which induces large uncertainties in projecting soil C dynamics. Here, we conducted large-scale topsoil sampling on the Tibetan Plateau, in combination with SOM fractionation and 300-day laboratory incubation to assess SOM fraction-dependent linkages between Q10 and microbial properties. We found that compared with MAOM, POM had larger Q10 and greater microbial diversity, and also structured distinct microbial communities as well as their co-occurrence patterns. Furthermore, associations of Q10 with microbial properties differed between the two SOM fractions. Bacterial community composition and relative abundance of bacterial keystone taxa affected Q10 for POM and MAOM respectively, while bacterial alpha diversity showed opposite relationships with Q10 for POM and MAOM. These findings highlight the necessity of incorporating SOM fraction-dependent microbial properties and their linkages with Q10 into Earth system models to accurately predict terrestrial C-climate feedback.

Long-term warming in a temperate forest accelerates soil organic matter decomposition despite increased plant-derived inputs

Climate change may alter soil microbial communities and soil organic matter (SOM) composition. Soil carbon (C) cycling takes place over multiple time scales; therefore, long-term studies are essential to better understand the factors influencing C storage and help predict responses to climate change. To investigate this further, soils that were heated by 5 °C above ambient soil temperatures for 18 years were collected from the Barre Woods Soil Warming Study at the Harvard Forest Long-term Ecological Research site. This site consists of large 30 × 30 m plots (control or heated) where entire root systems are exposed to sustained warming conditions. Measurements included soil C and nitrogen concentrations, microbial biomass, and SOM chemistry using gas chromatography–mass spectrometry and solid-state 13C nuclear magnetic resonance spectroscopy. These complementary techniques provide a holistic overview of all SOM components and a comprehensive understanding of SOM composition at the molecular-level. Our results showed that soil C concentrations were not significantly altered with warming; however, various molecular-level alterations to SOM chemistry were observed. We found evidence for both enhanced SOM decomposition and increased above-ground plant inputs with long-term warming. We also noted shifts in microbial community composition while microbial biomass remained largely unchanged. These findings suggest that prolonged warming induced increased availability of preferred substrates, leading to shifts in the microbial community and SOM biogeochemistry. The observed increase in gram-positive bacteria indicated changes in substrate availability as gram-positive bacteria are often associated with the decomposition of complex organic matter, while gram-negative bacteria preferentially break down simpler organic compounds altering SOM composition over time. Our results also highlight that additional plant inputs do not effectively offset chronic warming-induced SOM decomposition in temperate forests.

Improved Characterization of Soil Organic Matter by Integrating FT-ICR MS, Liquid Chromatography Tandem Mass Spectrometry, and Molecular Networking: A Case Study of Root Litter Decay under Drought Conditions.

Understanding of how soil organic matter (SOM) chemistry is altered in a changing climate has advanced considerably; however, most SOM components remain unidentified, impeding the ability to characterize a major fraction of organic matter and predict what types of molecules, and from which sources, will persist in soil. We present a novel approach to better characterize SOM extracts by integrating information from three types of analyses, and we deploy this method to characterize decaying root-detritus soil microcosms subjected to either drought or normal conditions. To observe broad differences in composition, we employed direct infusion Fourier-transform ion cyclotron resonance mass spectrometry (DI-FT-ICR MS). We complemented this with liquid chromatography tandem mass spectrometry (LC-MS/MS) to identify components by library matching. Since libraries contain only a small fraction of SOM components, we also used fragment spectral cosine similarity scores to relate unknowns and library matches through molecular networks. This integrated approach allowed us to corroborate DI-FT-ICR MS molecular formulas using library matches, which included fungal metabolites and related polyphenolic compounds. We also inferred structures of unknowns from molecular networks and improved LC-MS/MS annotation rates from ∼5 to 35% by considering DI-FT-ICR MS molecular formula assignments. Under drought conditions, we found greater relative amounts of lignin-like vs condensed aromatic polyphenol formulas and lower average nominal oxidation state of carbon, suggesting reduced decomposition of SOM and/or microbes under stress. Our integrated approach provides a framework for enhanced annotation of SOM components that is more comprehensive than performing individual data analyses in parallel.

Stoichiometry regulates rice straw-induced priming effect: The microbial life strategies

Straw and nutrients retained in soil are crucial for priming effect (PE) and consequently for soil organic matter (SOM) turnover. However, the mechanisms by which carbon (C), nitrogen (N), and phosphorus (P) and their stoichiometric ratios impact microbial communities and regulate the PE intensity remain controversial, particularly in the flooded rice soils. In this work, the PE dynamics and microbial life strategies were measured over 100 days following an analysis of C:N:P stoichiometry after 13C labeled straw and nutrient inputs. P was the most limiting nutrient for microorganisms in Straw + N, and soil organic matter (SOM) decomposition was thus reduced by 18%. This was evidenced by: (i) the highest stoichiometric imbalance of C:P (0.97) between available resources and microbial biomass, (ii) the highest dissolved organic C (DOC):Olsen P ratio (140), and (iii) the lowest bacterial abundance. In contrast, lowering the soil C:P ratio (65) under straw + NP accelerated SOM decomposition. Compared to straw + N, the bacterial gene abundance increased by 170% under straw + NP, and the relative abundance of Y-strategists (Firmicutes, Betaproteobacteria, Gammaproteobacteria and Bacteroidetes) was 6.8 times greater than that of straw + N, suggesting that P was a major limiting factor for microbes in this paddy soil. With the depletion of available C during incubation, bacterial gene abundance decreased for 9 times, and the abundance of Firmicutes decreased from 39% to 19%, the abundance of Deltaproteobacteria increased from 20% to 24%, indicating a shift from Y-strategists to A-strategists and acquiring the resources from SOM and inducing positive PE. Our study elucidates the complex and dynamic linkages between C, N and P and their available ratio in resources, and evidence changes in the microbial community structure and PE.