Sealing aerodynamic characteristics are affected by the seal structure, and thus the stability of the rotor system is affected too. A 1.5-stage, three-dimensional, full-cycle model of the high-pressure cylinder of a 1000 MW steam turbine was established. The high eccentricity whirl of the rotor was realized using mesh deformation technology and the multi-frequency whirl model. The nonlinear steam-flow-exciting force of different sealing structures was obtained using CFD/FLUENT, and the motion equations with a nonlinear steam-exciting force were solved using the Runge–Kutta method. The motion characteristics and stability of the rotor system with different sealing structures were obtained. The results show that there are “inverted bifurcation” and “double bifurcation” phenomena in the bifurcation diagrams of different tooth numbers, boss numbers, and tooth lengths, and a 1/2 power frequency of different sealing structures goes through the process of weakening, disappearing, reproducing, and evolving into a 1/3 power frequency and a 2/3 power frequency. With the increasing load, the steam-flow-exciting force becomes stronger, and the multi-frequency vibration and dense frequency phenomena are significant. Under some load conditions, the change curves of three kinds of teeth in 1/3 and 2/3 power frequency vibrations are highly similar, and the tooth number has little influence on the system stability. Under the high load condition, with the boss number increasing, the chaos phenomenon is weakened. Increasing the tooth length is beneficial to the stability of the rotor.
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