Isotopic fractionation properties have been successfully applied to identify the distribution and fate of nitrogen in ecosystems, revealing the dynamic response of N and O elements during nitrogen transport and transformation. However, only a few studies used the dual isotope technology in activated sludge treatment of domestic wastewater and many aspects of the process are unclear. Here, we use the dual isotope techniques to increase the understanding of the substrates required for nitrification reactions, nitrification performance, and process operation. Mixed sludge was successfully enriched with nitrifying bacteria in a continuous culture, and three dissolved oxygen (DO; 0.2–0.4, 3–4, and 7–8 mg/L) and three temperature levels (18 ± 1, 25 ± 1, and 33±1 °C) were tested for efficiency of nitrate nitrogen accumulation. Both δ15NNO3 and δ18ONO3 showed a gradual increase with an increase in DO or temperature, the increase in DO slowed down the fractionation effect of isotopes, and the increase in temperature reduced the variability in N and O utilization. The slope of δ15NNO3:δ18ONO3 gradually approached 1 with the increase in DO (<7 mg/L) or in temperature, and the optimal range of DO and temperature were accurately judged to strengthen the denitrification performance of nitrifying bacteria. δ18OH2O was successfully taken up to form NO2−-N and NO3−-N with 74 and 91% replacement rates, respectively, indicating that DO and H2O jointly completed the formation of nitrate nitrogen during the long nitrification process. In summary, the in situ dual isotope technology can help optimize the influence of environmental factors on nitrification performance to guide the long-term stable operation of nitrification reactions in sludge treatment and provide a reliable basis for complex activated sludge nitrification systems.
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