The objective of this research was to evaluate trends and relationships of energy and toxic elements accumulation in A-horizon (the depth of 0–5 cm) of soils and in selected plants of the hemioligotrophic (Dystric Cambisols) and oligotrophic (Skeletic-Rustic Podzols) spruce ecosystems situated along transect (750–1110 m a.s.l.) in the NP Slovenský raj (Eastern Slovakia). The results showed that EU limit values of risk elements in agricultural soils were exceeded for Cu and Cd at the altitude of 750–760 m a.s.l., and in case of Cd also above 1000 m a.s.l. Relationship between energy and toxic elements in soils revealed that with an increasing amount of energy, contents of Zn and Cu significantly declined with altitude (r > –0.5 or r > –0.9). The background value of Cu was exceeded in all plants, that of Zn for Dryopteris filix-mas and Rubus idaeus. Furthermore, excessive accumulation of Cd was revealed by all plants. Cu contents in soils were dominant in determining Cu uptake for Vaccinium myrtillus (r > 0.5); Zn and Cd for V. myrtillus (r > 0.6), D. filix-mas (r > 0.5 or r > 0.8) and Fagus sylvatica (r > –0.8 or r > –0.5); Zn also for R. idaeus species (r > 0.4). The soil-plant transfer coefficients higher than 1 hinted R. idaeus on the plots at the altitude of 960 m a.s.l. (Cd 1.1, Cu 1.2, Zn 3.1), which appears as an excellent native indicator of forest ecosystem contamination.