This article aims to investigate the dynamics of clamped-clamped porous viscoelastic double microbeams interconnected via a viscoelastic layer within the framework of the modified couple stress theory (MCST). Different types of porosity distributions are considered to examine the material imperfection effects on the dynamics of the double microbeam. A closed-cell porosity model is employed to model the variation of the material properties in the thickness plane. The coupled longitudinal and lateral equations of motion are derived using Hamilton’s principle. The governing equations of motion are solved using the modal decomposition method. The equations of motion are verified against the literature for simplified cases (i.e., a non-porous single viscoelastic microbeam and a porous single microbeam resting on a viscoelastic foundation). The numerical results are validated for simpler versions of the system using the finite element method and against the existing literature for a simplified case of a uniformly distributed porous double macrobeam connected via an elastic layer. Influences of viscoelasticity in the double microbeam, viscoelastic layer, porosity, and small-scale influences on the dynamics of the viscoelastic double microbeams are studied. It was found that increasing the material length-scale factor causes the complex fundamental lateral vibrational frequencies to increase for all the porosity patterns.