The effects of preferential flow on plant root and soil have not been deeply studied. Research on the combination of wetland vegetation, hydrology, and soil can provide a theoretical basis for wetland vegetation restoration and soil salinization control. We integrated preferential flow, root, and soil to study the distribution characteristics of the root architecture and soil nutrient of two different ecotypes of Phragmites communis (P. communis) in the Yellow River Delta on a small scale. We found that both root architectures included root length, width, surface area, volume, and biomass and soil nutrients included soil organic carbon, organic matter and total nitrogen decreased with the increase of soil depth. Large P. communis (LP) not only had significantly larger root length, width, surface area, but also had significantly higher soil organic carbon, organic matter, total nitrogen, and available phosphorus than small P. communis (SP). The root architectures of SP in the preferential flow area (PFA) were significantly greater than those in the matrix flow area (MFA). The contents of soil organic carbon, organic matter, and total nitrogen in LP grown in the PFA were obviously higher than those in the MFA. Based on correlation analysis, root architectures had remarkably positive correlations with soil organic carbon, organic matter, and total nitrogen. These findings suggest that preferential flow improves the root-soil system. By artificially adding peat and biochar and changing irrigation methods, the possibility of preferential flow can be increased, plant root growth and soil nutrient can be improved, so as to resist the damage of soil salinization. In addition, different ecotypes of P. communis should be planted to improve soil salinization. LP and SP are suitable for slight and heavy soil salinization areas respectively.
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