The surgical management of craniovertebral junction instability in pediatric patients has unique challenges. While the indications for internal fixation in children are similar to those of adults, the data concerning techniques, complications, and outcomes of spinal instrumentation comes from experience with adult patients. Diminutive osseous and ligamentous structures and anatomical variations associated with syndromic craniovertebral abnormalities frequently complicates the approaches and limits the use of internal fixation in children. Cervical arthrodesis in the pediatric age group has the potential for limiting growth potential and causing secondary deformity. Recent advances in image analysis have enabled preoperative planning which is critical to evaluate the size of instrumentation and its relation to the patient's anatomy. Newer techniques have recently evolved and have been incorporated in the management of pediatric patients with requirement for craniocervical stabilization. Over 750 craniovertebral junction fusions have been reviewed in children. The indications for atlantoaxial arthrodesis were: (a) absent odontoid process, dystopic os odontoideum, absent posterior arch of C1; (b) Morquio's syndrome, Goldenhar's syndrome, Conradi's syndrome, and spondyloepiphyseal dysplasia. The acquired abnormalities of trauma, postinfectious instability, and Down's syndrome completed the indication in children. The indications for occipitocervical fusion were: (a) anterior and posterior bifid C1 arches with instability, absent occipital condyles; b) severe reducible basilar invagination, unstable dystopic os odontoideum, and unilateral atlas assimilation; (c) acquired phenomenon with traumatic occipitocervical dislocation, complex craniovertebral junction fractures of C1 and C2, after transoral craniovertebral junction decompression, cranial settling in Down's syndrome and inflammatory disease such as Grisel's syndrome. Instability was seen in children with clivus chordoma and osteoblastoma. Atlantoaxial fusions were performed mainly with interlaminar rib graft fusion and more recently with the transarticular screw fixation in the older patient. In the teenager, lateral mass screws at C1 and rod fixation were made; C2 pars interarticular screw fixation and C2 pedicle screw fixation. A C2 translaminar screw fixation is described. Occipitocervical fusions were made utilizing rib grafts below the age of 6. A contoured loop fixation was made in children above the age of 7, and recently, rod and screw fixation was also utilized. Abnormal cervical spine growth was not seen in children who underwent craniocervical stabilization below the age of 5. The authors have reserved rigid instrumentation for children above the age of 10 years and dependent on the anatomy.