In addition to the filter coefficients, the location of the microphone array is a crucial factor in improving the overall performance of a beamformer. The optimal microphone array placement can considerably enhance speech quality. However, the optimization problem with microphone configuration variables is non-convex and highly non-linear. Heuristic algorithms that are frequently employed take a long time and have a chance of missing the optimal microphone array placement design. We extend the Bayesian optimization method to solve the microphone array configuration design problem. The proposed Bayesian optimization method does not depend on gradient and Hessian approximations and makes use of all the information available from prior evaluations. Furthermore, Gaussian process regression and acquisition functions make up the Bayesian optimization method. The objective function is given a prior probabilistic model through Gaussian process regression, which exploits this model while integrating out uncertainty. The acquisition function is adopted to decide the next placement point based upon the incumbent optimum with the posterior distribution. Numerical experiments have demonstrated that the Bayesian optimization method could find a similar or better microphone array placement compared with the hybrid descent method and computational time is significantly reduced. Our proposed method is at least four times faster than the hybrid descent method to find the optimal microphone array configuration from the numerical results.