The boreal forest is currently facing multiple disturbances, which are increasing in extent, frequency and severity. Of particular concern in the western boreal forest of Canada are wildfires and harvesting, which, in the short-term, may impact the forest floor, a storehouse of organic matter and site of highest soil microbial activity. However, how these disturbances may individually and cumulatively affect soil properties during ecosystem recovery is not well documented. Here we compared the separate and compound (salvage-logging) effects of wildfire and harvesting in the mixedwood boreal forest of northern Alberta. Ten years following disturbance, carbon chemical composition of the harvested forest floors was comparable to the control plots as was indicated by solid-state nuclear magnetic resonance analysis. We report a legacy effect of fire in recovering forest floors, with the continued presence of black carbon. Further, as determined by phospholipid fatty acid analysis (PLFA), both wildfire and salvage-logging disturbance resulted in distinct microbial composition from the control and harvest treatments. A shift in organic matter composition indicative of fresh plant inputs was determined to be a key driver of community differences. Despite the presence of black carbon, and shallower depth, the fire-disturbed forest floor harbored the greatest microbial biomass. However, this greater microbial biomass was not present following salvage-logging of the fire disturbed stands. Instead, the salvage-logged stands had the shallowest forest floor, low microbial biomass, and differed the most from the control forest floors based on PLFA results. Taken together, these results indicate that, ten years after disturbance, the compound disturbance of salvage-logging had a greater impact on the recovery of forest floor microbial communities than harvest or wildfire alone.