Changes In Composition Research Articles

The Microbiome in Inflammatory Bowel Disease.

The management of patients with inflammatory bowel disease (IBD) aims to control inflammation through the use of immunosuppressive treatments that target various points in the inflammatory cascade. However, the efficacy of these therapies in the long term is limited, and they often are associated with severe side effects. Although the pathophysiology of the disease is not completely understood, IBD is regarded as a multifactorial disease that occurs due to an inappropriate immune response in genetically susceptible individuals. The gut microbiome is considered one of the main actors in the development of IBD. Gut dysbiosis, characterised by significant changes in the composition and functionality of the gut microbiota, often leads to a reduction in bacterial diversity and anti-inflammatory anaerobic bacteria. At the same time, bacteria with pro-inflammatory potential increase. Although changes in microbiome composition upon biological agent usage have been observed, their role as biomarkers is still unclear. While most studies on IBD focus on the intestinal bacterial population, recent studies have highlighted the importance of other microbial populations, such as viruses and fungi, in gut dysbiosis. In order to modulate the aberrant immune response in patients with IBD, researchers have developed therapies that target different players in the gut microbiome. These innovative approaches hold promise for the future of IBD treatment, although safety concerns are the main limitations, as their effects on humans remain unknown.

MTORC1 Signaling Inhibition Modulates Mitochondrial Function in Frataxin Deficiency.

Lysosomes regulate mitochondrial function through multiple mechanisms including the master regulator, mechanistic Target of Rapamycin Complex 1 (mTORC1) protein kinase, which is activated at the lysosomal membrane by nutrient, growth factor and energy signals. mTORC1 promotes mitochondrial protein composition changes, respiratory capacity, and dynamics, though the full range of mitochondrial-regulating functions of this protein kinase remain undetermined. We find that acute chemical modulation of mTORC1 signaling decreased mitochondrial oxygen consumption, increased mitochondrial membrane potential and reduced susceptibility to stress-induced mitophagy. In cellular models of Friedreich's Ataxia (FA), where loss of the Frataxin (FXN) protein suppresses Fe-S cluster synthesis and mitochondrial respiration, the changes induced by mTORC1 inhibitors lead to improved cell survival. Proteomic-based profiling uncover compositional changes that could underlie mTORC1-dependent modulation of FXN-deficient mitochondria. These studies highlight mTORC1 signaling as a regulator of mitochondrial composition and function, prompting further evaluation of this pathway in the context of mitochondrial disease.

Mathematical optimization of multilinear and artificial neural network regressions for mineral composition of different tea types infusions

The objective of this study was to investigate the change in mineral composition depending on tea variety, tea concentration, and steeping time. Four different tea varieties, black Ceylon (BC), black Turkish (BT), green Ceylon (GC), and green Turkish (GT), were used to produce teas at concentrations of 1, 2, and 3%, respectively. These teas were produced using 7 different steeping times: 2, 5, 10, 20, 30, 45, and 60 min. It was also aimed to optimize the regression equations utilizing these factors to identify parameters conducive to maximizing Zn, K, Cu, Mg, Ca, Na, and Fe levels; minimizing Al content, and maintaining Mn level at 5.3 mg/L. The optimal conditions for achieving a Mn content of 5.3 mg/L in black Turkish tea entailed steeping at a concentration of 1.94% for 11.4 min. Variations in K and Mg levels across teas were inconsistent with those observed for other minerals, whereas variations in Al, Cu, Fe, Mn, Na, and Zn levels exhibited a close relationship. Overall, mineral levels in tea can be predicted through regression analysis, and by mathematically optimizing the resultant equations, the requisite conditions for tea production can be determined to achieve maximum, minimum, or target mineral values.

The polyunsaturated fatty acid docosahexaenoic affects mitochondrial function in prostate cancer cells

BackgroundProstate cancer (PCa) shows a rewired metabolism featuring increased fatty acid uptake and synthesis via de novo lipogenesis, both sharply related to mitochondrial physiology. The docosahexaenoic acid (DHA) is an omega-3 polyunsaturated fatty acid (PUFA) that exerts its antitumoral properties via different mechanisms, but its specific action on mitochondria in PCa is not clear. Therefore, we investigated whether the DHA modulates mitochondrial function in PCa cell lines.MethodsHere, we evaluated mitochondrial function of non-malignant PNT1A and the castration-resistant (CRPC) prostate 22Rv1 and PC3 cell lines in response to DHA incubation. For this purpose, we used Seahorse extracellular flux assay to assess mitochondria function, [14C]-glucose to evaluate its oxidation as well as its contribution to fatty acid synthesis, 1H-NMR for metabolite profile determination, MitoSOX for superoxide anion production, JC-1 for mitochondrial membrane polarization, mass spectrometry for determination of phosphatidylglycerol levels and composition, staining with MitoTracker dye to assess mitochondrial morphology under super-resolution in addition to Transmission Electron Microscopy, In-Cell ELISA for COX-I and SDH-A protein expression and flow cytometry (Annexin V and 7-AAD) for cell death estimation.ResultsIn all cell lines DHA decreased basal respiratory activity, ATP production, and the spare capacity in mitochondria. Also, the omega-3 induced mitochondrial hyperpolarization, ROS overproduction and changes in membrane phosphatidylglycerol composition. In PNT1A, DHA led to mitochondrial fragmentation and it increased glycolysis while in cancer cells it stimulated glucose oxidation, but decreased de novo lipogenesis specifically in 22Rv1, indicating a metabolic shift. In all cell lines, DHA modulated several metabolites related to energy metabolism and it was incorporated in phosphatidylglycerol, a precursor of cardiolipin, increasing the unsaturation index in the mitochondrial membrane. Accordingly, DHA triggered cell death mainly in PNT1A and 22Rv1.ConclusionIn conclusion, mitochondrial metabolism is significantly affected by the PUFA supplementation to the point that cells are not able to proliferate or survive under DHA-enriched condition. Moreover, combination of DHA supplementation with inhibition of metabolism-related pathways, such as de novo lipogenesis, may be synergistic in castration-resistant prostate cancer.

Long-term evaluation of surface topographic and topsoil grain composition changes in an agricultural landscape

Understanding long-term changes in topography and topsoil grain composition is crucial for the management of agricultural landscapes, especially in areas prone to wind erosion. This study investigates long-term changes in topography and topsoil grain composition within an agricultural landscape in south-western Slovakia. To analyse topographic changes over time, we used high-precision positioning measurements and airborne laser scanning to create digital terrain models (DTM) for the years 2011, 2017 and 2020. To assess changes in soil grain composition, we performed grain size analyses on soil samples collected during three different periods: M1 (1961–1970), M2 (2009–2015) and M3 (2015–2016). Changes in soil texture were evaluated to understand the impact of wind erosion on soil composition. The influence of windbreaks was also analysed by comparing the accumulation and deflation processes. The results showed significant changes in both topography and soil texture over the study period. The DTMs showed marked differences in the accumulation and deflation processes, highlighting areas affected by wind erosion. Comparisons of soil samples showed a shift in dominant soil types from loam and clay loam to silty loam, highlighting the effects of wind erosion. Analysis revealed a decrease in clay and silt content and an increase in sand content, indicating wind-induced soil degradation. The presence of windbreaks played a crucial role in reducing soil erosion by reducing wind speed, promoting soil accumulation and stabilising the landscape up to 80 m windward and 20 m leeward. The study highlights the complex interplay of climate and wind factors in shaping topography and soil properties and emphasises the protective role of windbreaks in agricultural landscapes over time. Our results show that wind erosion significantly alters soil texture, which can affect agricultural productivity. However, windbreaks have proven to be an effective measure in reducing soil erosion and maintaining soil quality.

Reefal ostracod assemblages from the Zanzibar Archipelago (Tanzania)

Abstract. Tropical reefs encompass tremendous biodiversity yet are imperiled by increasing natural and anthropogenic disturbances worldwide. Meiobenthic biota on coral reefs, for example, ostracods, may experience substantial diversity loss and compositional changes even before being examined. In this study, we investigated the reefal ostracod assemblages from the highly diverse and productive ecosystem in the Zanzibar Archipelago (Pemba, Zanzibar, and Mafia islands), Tanzania, to understand how their diversity and faunal structure vary in response to water depth, benthic community type, and human impacts. We characterized four distinct ostracod faunas associated with different benthic habitats, which were deep fore reefs, shallow fringing reefs, degraded fringing reefs, and algae-covered intertidal flats. We identified typical ostracod associations, i.e., Bairdiidae versus Loxoconchidae–Xestoleberididae, that showed affinities towards hard corals or algae on the reef platforms, respectively. The highest diversity was found on shallow fringing reefs where coral-affined and algae-affined taxa exhibited maximum overlap of their distributional ranges, while the sand flats, mangrove, and marginal reefs within the intertidal zone had much lower diversity with a high dominance of euryhaline taxa. Along the western coast of Zanzibar Island, coastal development likely resulted in a unique faunal composition and comparatively low diversity of ostracod assemblages among those in reefal habitats, in conjunction with overall reef ecosystem degradation. This study represents the first large-scale assessment of shallow-marine ostracods in the Zanzibar Archipelago. It lays a solid foundation for future research into the ecological significance of ostracods on coral reefs.

Influence of gestational window on offspring vascular health in rodents with in utero exposure to electronic cigarettes.

Studies have shown cerebrovascular dysfunction in offspring with full-gestational electronic cigarette (Ecig) exposure, but little is known about how individual trimester exposure impacts offspring health. This study aimed to determine if there is a critical window during gestation that contributes to vascular and anxiety-like behavioural changes seen with full-term exposure. To test this, rats were time-mated, and the pregnant dams were randomly assigned to Ecig exposure during first trimester (gestational day, GD2-7), second trimester (GD8-14), third trimester (GD15-21) or full-term gestation (GD2-21). We also assessed the effect of maternal preconception exposure. Both male and female offspring from all maternal exposure conditions were compared to offspring from dams under ambient air (control) conditions. Ecig exposure consisted of 60-puffs/day (5days/week) using either 5 or 30watts for each respective exposure group. We found that maternal exposure to Ecig in the second and third trimesters resulted in a decrease (23-38%) in vascular reactivity of the middle cerebral artery (MCA) reactivity in 3- and 6-month-old offspring compared to Air offspring. Further, the severity of impairment was comparable to the full-term exposure (31-46%). Offspring also displayed changes in body composition, body mass, anxiety-like behaviour and locomotor activity, indicating that Ecigs influence neurodevelopment and metabolism. Maternal preconception exposure showed no impact on offspring body mass, anxiety-like behaviour, or vascular function. Thus, the critical exposure window where Ecig affects vascular development in offspring occurs during mid- to late-gestation in pregnancy, and both 5W and 30W exposure produce significant vascular dysfunction compared to Air. KEY POINTS: Exposure to electronic cigarettes (Ecigs) is known to increase risk factors for cardiovascular disease in both animals and humans. Maternal Ecig use during pregnancy in rodents is found to impair the vascular health of adolescent and adult offspring, but the critical gestation window for Ecig-induced vascular impairment is not known. This study demonstrates Ecig exposure during mid- and late-gestation (i.e. second or third trimester) results in impaired endothelial cell-mediated dilatation (i.e. middle cerebral artery reactivity) and alters anxiety-like behaviour in offspring. Maternal exposure prior to conception did not impact offspring's vascular or anxiety-like behavioural outcomes. Rodent models have been a reliable and useful predictor of inhalation-induced harm to humans. These data indicate maternal use of Ecigs during pregnancy should not be considered safe, and begin to inform clinicians and women about potential long-term harm to their offspring.

Time for a change? Investigating shifts in agricultural economies and food in southern-central Norway (11th -16th c. AD)

Cattle and, to a lesser extent, sheep/goat and pigs, were crucial components of Norway’s socio-cultural and economic dynamics in the Middle Ages. Zooarchaeological analyses of faunal samples from different urban sites reveal that changes in cattle husbandry practices occurred in Norway over the medieval period, and especially in its early phases. This is clearly demonstrated in the case of medieval Oslo, where an in-depth zooarchaeological study provides the first comprehensive review of cattle husbandry strategies. In the first centuries of the medieval period (11th -mid 12th c. AD), cattle were mainly raised for milk and meat production, while fewer young and more numerous older individuals, most of which probably oxen, were present from mid 12th -13th c. AD onwards. This hypothesis is supported by biometrical analyses of cattle postcranial bones, indicating changes in the sexual composition of cattle herds over time. Therefore, from ca. mid 12th -13th c. AD onward, cattle seem to have been more used for ploughing and, only once old, to have been culled for their meat. In turn, this evidence suggests that more arable lands had to be ploughed, especially in eastern and central Norway. Here, demographic growth and settlement expansion would have led to an increase in food demand; at the same time, more favourable climatic conditions might have contributed to an increase in the availability of arable fields. This article suggests that medieval Norwegian farming was not static as historically thought, but rather connected to wider-scale agricultural innovations characterising other parts of medieval Europe.

Drilling data-calibrated shale compaction models for pore pressure evaluation from geophysical well logs in the North Alpine Foreland Basin, SE Germany

This paper combines quality-controlled pore pressure measurements and indicators with geophysical well logs of 310 deep wells to evaluate the pore pressure distribution in the overpressured North Alpine Foreland Basin, in southeast Germany. Previous studies relied chiefly on low resolution checkshots and vertical seismic profiles calibrated to only a few pore pressure measurements. Current study based on sonic and electrical resistivity logs indicates that more than one shale normal compaction trend is required to appropriately assess pore pressure from geophysical well logs. Thereby, the necessary adjustments of the derived compaction trends apply to both sonic and resistivity data, which possibly reflect a gradual change in mineralogical composition with decreasing clay content or progressing cementation from north to south or an increase of horizontal loading driven compaction towards the North Alpine Thrust Front. The newly derived compaction-based pore pressure distribution is combined with drilling data-based pore pressure evaluations and offers a comprehensive update of previous pore pressure investigations in the North Alpine Foreland Basin. Our study is therefore of key importance for optimised well planning and cost-effective drilling in the course of the recent expansion of deep geothermal energy exploration in the overpressured North Alpine Foreland Basin.

Temporal stability of sex ratio distorter prevalence in natural populations of the isopod Armadillidium vulgare.

In the terrestrial isopod Armadillidium vulgare, many females produce progenies with female-biased sex ratios due to two feminizing sex ratio distorters (SRD): Wolbachia endosymbionts and a nuclear non-mendelian locus called the f element. To investigate the potential impact of these SRD on the evolution of host sex determination, we analyzed their temporal distribution in six A. vulgare populations sampled between 2003 and 2017, for a total of 29 time points. SRD distribution was heterogeneous among populations despite their close geographic locations, so that when one SRD was frequent in a population, the other SRD was rare. In contrast with spatial heterogeneity, our results overall did not reveal substantial temporal variability in SRD prevalence within populations, suggesting equilibria in SRD evolutionary dynamics may have been reached or nearly so. Temporal stability was also generally reflected in mitochondrial and nuclear variation. Nevertheless, in a population, a Wolbachia strain replacement coincided with changes in mitochondrial composition but no change in nuclear composition, thus constituting a typical example of mitochondrial sweep caused by endosymbiont rise in frequency. Rare incongruence between Wolbachia strains and mitochondrial haplotypes suggested the occurrence of intraspecific horizontal transmission, making it a biologically relevant parameter for Wolbachia evolutionary dynamics in A. vulgare. Overall, our results provide an empirical basis for future studies on SRD evolutionary dynamics in the context of multiple sex determination factors co-existing within a single species, to ultimately evaluate the impact of SRD on the evolution of host sex determination mechanisms and sex chromosomes.

Prevalence and Predictors of Normal-Weight Obesity among Women.

The present study aimed to (a) assess normal-weight obesity (NWO) and general obesity prevalence among women of different ages residing in urban areas, (b) evaluate subcutaneous fat thickness (SFT) in women with NWO, (c) establish SFT cutoff points for distinguishing NWO, and (d) explore eating habits linked to NWO. This cross-sectional study with 184 women aged 18-65 with NWO, normal weight without obesity (NWNO), overweight and general obesity included evaluation of body composition, SFT assessment using 2.5 MHz A-mode ultrasound (ISAK protocol, 7 sites) and lifestyle inquiries. The curvilinear relationship between body fat and BMI rendered BMI an unreliable indicator of adiposity in women with normal weight (BMI < 25 kg/m2). Almost 30% of women with a high body fat percentage (BFP ≥ 30%) were misclassified when BMI was used to measure adiposity. The overall obesity prevalence defined by BFP was almost four times higher than that defined by BMI (56.0 vs. 18.0%, p = 1 × 10-4). Women with NWO, overweight and general obesity shared a similar SFT profile and eating habits, setting them apart from those with NWNO. The mean SFT was the most reliable NWO predictor, with a threshold set at 12 mm equal to the 66th percentile. Mean SFT accurately classified 85% of women with NWO. While age did not significantly affect subcutaneous fat accumulation, total fat levels increased with age (R2 = 0.07 and R2 = 0.19, padj = 0.1 and padj = 9 × 10-4). Higher NWO prevalence in middle-aged women was linked to age-related increase in fat mass and decrease in fat-free mass. Engaging in regular physical activity and reducing snack consumption effectively countered age-related changes in body composition (padj < 0.05). Women under 45 years who consumed sweet bakery items, fast food, and snacks more frequently showed higher BFP and NWO status (padj < 0.05). Prevention strategies should focus on monitoring body composition and promoting healthy behaviors, particularly among young women transitioning into adulthood and women over 45 years.

Co-wetting behavior of molten slag and iron on carbon materials in blast furnace

The interaction between molten slag, liquid iron, and carbon is one of the most typical and complex multiphase flow behaviors in the high-temperature zone of blast furnace. The wetting behavior among these phases is the most fundamental characteristic that determines their interactions. This research focuses on the co-wetting behavior of molten slag and iron on graphite, using high-temperature experiments and atomistic simulations. The results revealed that the multiphase cooperative reaction wetting process is influenced by multiple factors. The wettability of molten iron is mainly affected by its initial carbon content, while the wettability of slag is influenced by both the initial carbon content of the molten iron and its own compositional changes. The initial carbon content in molten iron affects the carburizing reaction, which in turn influences the wetting mechanism between molten iron and graphite. Additionally, it alters the reaction of FeO in the slag, thereby modifying the properties of the slag-carbon interface and affecting the overall co-wetting process. Meta-dynamic calculations showed that the reduction of molten iron oxide by dissolved carbon is significantly more effective than that by solid graphite carbon, demonstrating that the behavior of carbon between iron and slag is a key factor in the multiphase cooperative reaction process.

Enhanced Saccharification Yield of Alkali Pretreated Sugarcane Bagasse Utilizing Customized Cellulase Cocktail from Trichoderma harzianum and Trichoderma viride

The experiment was conducted during 2023 at Bioenergy Laboratory, Department of RBEE, College of Agricultural Engineering and Technology, CCSHAU, Hisar, Haryana, India. Compositional changes in sugarcane bagasse subjected to varying concentrations of sodium hydroxide (0.3% to 1.2%), revealing significant increases in glucan content (from 37.13% to 53.81%) alongside decreases in xylan, acid-insoluble lignin, acid-soluble lignin, ash, and other extractives. These changes were validated using microscopic technique SEM, confirming the efficacy of the pretreatment process. The utilization of a customized cellulase cocktail derived from Trichoderma harzianum and Trichoderma viride holds significant promise in enhancing the saccharification from alkali-pretreated sugarcane bagasse. This study investigates the synergistic effects of cellulase enzymes produced by these fungi on the hydrolysis of lignocellulosic biomass. The enzymatic hydrolysis process is optimized by varying enzyme dosages, reaction conditions, and incubation times to maximize the release of fermentable sugars. Results indicate a substantial improvement in saccharification efficiency with the customized cellulase cocktail, highlighting its potential for sustainable biofuel production. The pretreated sugarcane bagasse, when saccharified with Trichoderma harzianum and Trichoderma viride individually, released 254.43 mg g-1 and 325.53 mg g-1 of reducing sugars, respectively, after 40 h of incubation. In contrast, the combined enzymatic cocktail achieved a substantial increase in glucose yields (345.12 mg g-1) at 40 h, showcasing the synergistic effect of the combined enzymatic activity. This research contributes to advancing bioconversion technologies for utilizing lignocellulosic biomass resources efficiently and economically, thus addressing key challenges in sustainable energy production.

Climate and Land Use Changes Impact the Future of European Amphibian Functional Diversity

Climate and land use changes drive shifts in species distributions, causing variations in species richness. Yet the influence of shifts in species distributions on functional diversity at broad spatial scales remains uncertain. Here, we explored the potential effect of climate and land use changes on the functional diversity of European amphibian assemblages from the present to 2050, along with their effect on species richness. We performed species distribution modelling using a scenario of climate and land use change to estimate current and future potential distributions of 73 species. We estimated functional diversity using morphological and ecological functional traits. Our results highlight the intricate effects of climate and land use changes on taxonomic and functional diversity of amphibians. A climate-induced northward expansion of amphibians is anticipated, with temperature, precipitation, and forest cover prominently shaping future assemblages. Species expected to have shrinking ranges (n = 35) tend to mature sexually at a later age, produce fewer offspring per reproductive event, and live at higher maximum altitudes compared to species expected to expand (n = 38). Furthermore, trait composition changes are expected to exceed predictions based solely on species richness. These changes will vary geographically, with northern regions likely experiencing substantial increases in functional richness and functional redundancy, i.e., the coexistence of species with similar functional roles. Our findings underscore that functional diversity changes might serve as an early warning signal to assess human impacts on biodiversity.

Nutrition, Body Composition, and Performance: A Case Study of Two Collegiate Wrestlers

Introduction: This case-study examined changes in nutrient intake, body composition, and performance of two Division I wrestlers before and after competition season. Methods: Two male wrestlers were assessed during pre-season (PRE) and after the national championship tournament (POST). Body composition was determined via 7-site skinfolds to estimate body fat percent (BF%) and fat-free mass (FFM). Nutrient intake was analyzed from 3-day food recalls. A Biodex dynamometer assessed isometric strength. A stationary cycle ergometer was used to assess anaerobic time to exhaustion (TTE). Results: Both wrestlers’ body mass and BF% increased at POST, while Participant 2’s FFM decreased 0.9kg. Participant 2 met 44% and 67% of energy recommendations PRE and POST, respectively. Carbohydrate intake was approximately at 33% and 57% recommendations PRE and POST, while protein intake was at 75% of estimated needs. Participant 1 maintained performance from PRE to POST, while Participant 2 experienced a -15.0 and -5.0 Nm·kg-1 decrease in extension and flexion strength, respectively. Conclusions: For these two athletes, under consuming energy and macronutrients seems to have a negative effect on muscle mass and strength performance, with less impact on anaerobic performance. These findings may provide insight for monitoring nutrition throughout the wrestling season to prevent decreases in strength and FFM.

23 Pre-surgical visceral adipose tissue may be a novel pre-surgical risk factor for acute kidney injury among clear cell renal cell cancer patients undergoing radical nephrectomy

Abstract Background Patients with renal cancer undergoing partial (PN) or radical nephrectomy (RN) are at risk for acute kidney injury (AKI). Established risk factor for AKI include baseline comorbidities (e.g., obesity, hypertension), normal renal parenchymal loss, and ischemia-reperfusion injury. Pre-surgical body composition may be an overlooked modifiable patient characteristic that influences risk of AKI. We hypothesized that patients with higher visceral adipose tissue quantity or lower skeletal muscle quantity would have a higher risk of AKI. Methods The RESOLVE study at Memorial Sloan Kettering Cancer Center is a retrospective study of 1239 patients with stage I-III clear cell renal cell carcinoma (ccRCC) undergoing PN or RN from 2000 to 2020. We excluded from analysis patients with solitary kidney, those without preoperative serum creatinine (sCr) measurements, and those without a sCr measurement within seven days following nephrectomy, yielding a study population of 1,200 ccRCC patients with longitudinal sCr assessment (n=754 PN; n=446 PN). AKI was defined as a binary variable using the Kidney Disease – Improving Global Outcomes (KDIGO) criteria, based on a threshold of either a 1.5x relative or 0.3 mg/dl absolute increase in sCr within seven days. The cross-sectional areas and radiodensities of visceral adipose and skeletal muscle tissues were determined from pre-surgical computed tomography (CT) scans at the third lumbar vertebrae using Automatica software. We used generalized linear models with a binomial family and identity link to estimate seven-day risk differences (RD) and 95% confidence intervals in subgroups defined by surgery type. Results AKI was more frequent among patients undergoing RN (66% vs 26% among PN). Male patients, those with higher eGFR prior to surgery, those with lower stage/smaller tumors, and those with a history of hyperlipidemia more frequently experienced AKI in the post-operative period. No associations were observed with other reported comorbidities (diabetes, hypertension). While no association was observed between BMI and risk of AKI, visceral adipose and skeletal muscle variables were significantly associated with risk of AKI in univariate models. After adjustment for age, sex, comorbidities, and other body composition variables, only higher visceral adipose tissue quantity remained significantly associated with increased risk of AKI [RD per 40 unit increase (95% CI): 5.2 (1.3, 9.2)]. Muscle characteristics were not associated with AKI in multivariable models. Among patients undergoing PN, we observed a higher frequency of AKI among male patients, those with higher stage/larger tumors, and those with longer ischemia times. No significant associations were observed with comorbidity histories. In univariate models, visceral adipose tissue quantity and quality as well as skeletal muscle quantity were associated with AKI risk; however, after adjustment for age, sex, comorbidities, and other body composition variables, we observed no significant associations between any body composition feature and AKI in patients undergoing PN. Conclusions Associations between pre-surgical body composition and risk of AKI vary by surgery type. Visceral adipose tissue quantity was associated with risk of AKI among patients undergoing RN, but not PN. This finding may be relevant for patient counseling, consideration for nephron-sparing surgery, and development of interventions to lower visceral adipose tissue quantity. Future studies should evaluate the impact of both pre-surgical and post-surgical change in body composition in relation on chronic kidney disease after nephrectomy.

Acute nitrite exposure causes gut microbiota dysbacteriosis and proliferation of pathogenic Photobacterium in shrimp

Nitrite exposure has become a significant concern in the aquaculture industry, posing a severe threat to aquatic animals such as shrimp. While studies have reported the adverse effects of nitrite on shrimp growth, the part played by the gut microbiota in shrimp mortality resulting from nitrite exposure is poorly understood. Here, the effects of nitrite on shrimp gut bacterial community were investigated using 16S rRNA amplicon sequencing, bacterial isolation, genomic analysis, and infection experiments. Compared to the control_healthy group, changes in the bacterial composition of the nitrite_dead group were associated with reduced abundance of specific beneficial bacteria and increased abundance of certain pathogenic bacteria. Notably, members of the Photobacterium genus were found to be significantly enriched in the nitrite_dead group. Genomic analysis of a representative Photobacterium strain (LvS-8n3) revealed a variety of genes encoding bacterial toxins, including hemolysin, adhesin, and phospholipase. Furthermore, it was also found that LvS-8n3 exhibits strong pathogenicity, probably due to its high production of pathogenic factors and the ability to utilize nitrite for proliferation. Therefore, the proliferation of pathogenic Photobacterium species appears pivotal for driving shrimp mortality caused by nitrite exposure. These findings provide novel insights into the disease mechanism in shrimp under conditions of environmental change.

Theoretical and Molecular Dynamics Simulation Approaches to Praseodymium Content Effect on Radiation Shielding and Time Dependent Volume‐Collapse for a Newly Produced Borate Glass

AbstractGamma‐ray, fast neutron and charged particle shielding characteristics of Praseodymium (Pr3+) activated glasses with composition 10ZnF2‐(10‐x)SrO‐15Li2O‐65H3BO3‐xPr2O3(where x = 0.1, 0.5, 1.0, 1.5, and 2.0) are investigated. For this, the radiation shielding parameters are estimated by using Photon Shielding and Dosimetry (Phy‐X/PSD), Interaction of Proton, Alpha, Gamma rays, Electrons, and X‐rays with matter (PAGEX), Stopping Powers and Ranges for Electrons (ESTAR), and The Stopping and Range of Ions in Matter (SRIM) codes. Furthermore, the results are compared comprehensively and comparatively. The glasses with increasing Pr3+ content exhibited higher shielding potential. It can be said that the ZFLHBPr2.0 sample could be used as a shielding material in various applied fields. Additionally, the effect of Pr composition on structural transitions and time‐dependent volume‐collapse of this new family of borate glass doped with Pr is analyzed by molecular dynamics study (MD) based density functional tight binding method. The simulation results show that the addition of Pr led to the cubic‐orthorhombic transformation of simulation cell at determined temperature and 1 atm pressure. Also, a sudden decrease in volume are observed within a short time at 8% Pr composition (x = 2.0) atmospheric pressure. This result provides a strong connection between Pr composition and volume change with time and at constant low pressure.

Gestational PFAS exposure and newborn size: The modifying effect of cord blood fatty acids

Per- and polyfluoroalkyl substances (PFASs) can disrupt lipid metabolism, and changes in cord blood fatty acid composition have been observed in small newborns. Emerging evidence suggests that exposure to PFASs during pregnancy is linked to decreased newborn size, although the evidence is not consistent. The modifying effect of fatty acids on the associations of gestational PFAS exposure with newborn size is still unknown. Here we show that the nutritional status of the fetus, as indicated by the level of fatty acids in the cord blood, mitigates the adverse effects of gestational PFAS exposure on the size of the newborn. Our study confirms the adverse developmental effects of PFASs and identifies emerging short-chain PFASs as the primary drivers of reduced newborn size, despite their lower exposure burden compared to legacy PFASs. Additionally, we find the protective role of cord blood fatty acids, suggesting potential strategies for mitigating the detrimental effects of emerging environmental exposures on human health. Our findings provide new evidence of the potential toxicity of emerging PFASs and call for further toxicity evaluations of these pollutants for regulatory purposes. Future studies should consider the complex interaction between exposure and nutrition within the human body, particularly during the first thousand days of life, to promote lifelong health.

Modeling glioblastoma tumor progression via CRISPR-engineered brain organoids.

Glioblastoma (GBM) is an aggressive form of brain cancer that is highly resistant to therapy due to significant intra-tumoral heterogeneity. The lack of robust in vitro models to study early tumor progression has hindered the development of effective therapies. Here, we develop engineered GBM organoids (eGBOs) harboring GBM subtype-specific oncogenic mutations to investigate the underlying transcriptional regulation of tumor progression. Single-cell and spatial transcriptomic analyses revealed that these mutations disrupt normal neurodevelopment gene regulatory networks resulting in changes in cellular composition and spatial organization. Upon xenotransplantation into immunodeficient mice, eGBOs form tumors that recapitulate the transcriptional and spatial landscape of human GBM samples. Integrative single-cell trajectory analysis of both eGBO-derived tumor cells and patient GBM samples revealed the dynamic gene expression changes in developmental cell states underlying tumor progression. This analysis of eGBOs provides an important validation of engineered cancer organoid models and demonstrates their utility as a model of GBM tumorigenesis for future preclinical development of therapeutics.