The existing inherent strain method is improved in this paper to address the shortcomings of the existing inherent strain method in the process of loading inherent strain. Unlike the traditional inherent strain method, which uses one-step loading inherent strain for each weld seam for one-time elastic calculation, the improved inherent strain method uses step-by-step loading inherent strain for each weld seam for multiple elastic calculations to predict welding deformation. The step-by-step loading inherent strain method (SBS-ISM) is more in line with the actual welding deformation generation process. Firstly, the local finite element model of the T-joint was used to analyze the welding deformation and extract the inherent strain by using the thermal elastic–plastic finite element method (TEP-FEM). Subsequently, the one-step loading inherent strain method (OS-ISM) and the step-by-step loading inherent strain method (SBS-ISM) were used to predict the welding deformation for the same local finite element model, respectively. The comparative results showed that the trend and magnitude of welding deformation calculated using SBS-ISM was much closer to those calculated using TEP-FEM. The OS-ISM and SBS-ISM were used to predict the welding deformation of the backward centrifugal fan impeller under different welding sequences, respectively. By comparing the welding deformation results calculated using the two inherent strain methods with the experimental results, it was demonstrated that the step-by-step loading inherent strain method (SBS-ISM) provides more accurate and reliable predictions of welding deformation for large and complex thin-walled T-shaped structural components compared to the one-step loading inherent strain method (OS-ISM).