The catalytic efficiency of manganese-based catalysts in practical ozone decomposition applications is limited by challenging desorption of intermediate oxygen species and competitive adsorption of H2O molecules in humid environments. In this work, MnCO3/Mn3O4 composites with heterogeneous structures were synthesized through a facile one-step strategy. The obtained MnCO3/Mn3O4-1/2 catalyst exhibited high content of oxygen vacancies, fast electron mobility rate and obvious advantages in catalytic ozone decomposition performance at a space velocity of 600 L g−1 h−1 and 95% RH. In-situ DRIFT spectra indicated that the rate-determining steps for ozone decomposition of MnCO3 and Mn3O4 are the reaction of atomic oxygen with ozone to form O22- and desorption of O22-, respectively. MnCO3/Mn3O4 heterogeneous catalyst undergoes reconfiguration under ozone atmosphere, inducing discontinuous MnOx coatings on the MnCO3 surface, which form a potential difference with Mn3O4. MnCO3/Mn3O4 heterogeneous structure modulates the electronic state of active site, and the synergistic effect of MnCO3 and Mn3O4 improves catalytic performance.