Diversity Patterns Of Communities Research Articles

Plastic film mulching regime altered fungal, but not bacterial community structure at the regional scale

Plastic film mulching (PFM) can influence soil nutrients, thereby improving plant growth and yield in vast dryland areas. However, it is unclear how PFM treatment affects soil microbial communities, especially with respect to community diversity, assembly processes, and co-occurrence patterns in multiple sites. In the present study, we explored the effects of traditional flat planting (TP) and PFM on the crop yield as well as the soil quality, bacterial and fungal diversity, community composition, assembly processes, and co-occurrence networks in broomcorn millet (Panicum miliaceum L.) fields in northern China. The results showed that compared with TP, PFM significantly enhanced soil hydrothermal conditions and soil nutrients, thereby improving the agronomic characteristics and yield of broomcorn millet in the nine study sites. Furthermore, PFM significantly reduced the fungal alpha diversities and changed the fungal community composition and relative abundances of some bacterial and fungal taxa. Random forest (RF) analysis indicated that fungal alpha diversity, soil temperature, and pH were the most important factors affecting broomcorn millet yield. PFM decreased the stochastic processes of the fungal community, also reduced the complexity and stability of the bacterial and fungal networks, which was reflected in the lower number of nodes, edges, ACC, and degree. Moreover, PFM also altered the bacterial and fungal keystone taxa. In summary, we were able to accurately estimate the influence of PFM on soil quality and microbial ecology, and our results provide valuable information for the sustainable development of dryland agriculture in northern China.

Dispersal ability is associated with contrasting patterns of beta diversity in African small mammal communities

AbstractAimSpatial processes and environmental filtering are important factors shaping community composition, but their effects are rarely tested across all aspects and components of beta diversity. We investigate both of these factors to explain patterns of taxonomic, functional and phylogenetic beta diversity of small mammals across Sub‐Saharan Africa. We predict that groups with poorest dispersal ability will experience the highest taxonomic and phylogenetic turnover but a nesting of functional diversity independent of dispersal.LocationAfrica.TaxaRodents, bats, shrews.MethodsWe amassed a continent‐spanning dataset of 97 bat assemblages, 166 rodent assemblages and 153 shrew assemblages comprising a total of 183, 225 and 109 species, respectively, from six bioregions of Sub‐Saharan Africa. We calculated three aspects of beta diversity: taxonomic, functional and phylogenetic. For each of these, we first calculated total beta diversity based on the Sørensen index (βsor) and then decomposed this into turnover (βsim) and nestedness (βnes) components. We then used Moran's Eigenvector Maps to examine the relationships between each aspect of beta diversity and environmental gradients (environmental filtering) and geographical distance between sites (spatial processes).ResultsWe found consistent patterns across the three taxa in all aspects of beta diversity, with taxonomic beta diversity being greatest and phylogenetic beta diversity being lowest. The turnover component was typically greater than the nestedness component for taxonomic and functional beta diversity, but not for phylogenetic beta diversity, for all three groups. Beta diversity was also linked with the dispersal ability of the three groups, with the highest levels of beta diversity found in shrews, intermediate levels in rodents and the lowest levels in bats.Main ConclusionsSpatial processes, which are linked to the dispersal abilities of the three taxa of small mammal, dominate environmental drivers in structuring African small‐mammal communities with phylogenetic comparisons suggesting a relatively permeable continent.

Urbanization Reduces Phyllosphere Microbial Network Complexity and Species Richness of Camphor Trees

Studies on microbial communities associated with foliage in natural ecosystems have grown in number in recent years yet have rarely focused on urban ecosystems. With urbanization, phyllosphere microorganisms in the urban environment have come under pressures from increasing human activities. To explore the effects of urbanization on the phyllosphere microbial communities of urban ecosystems, we investigated the phyllosphere microbial structure and the diversity of camphor trees in eight parks along a suburban-to-urban gradient. The results showed that the number of ASVs (amplicon sequence variants), unique on the phyllosphere microbial communities of three different urbanization gradients, was 4.54 to 17.99 times higher than that of the shared ASVs. Specific microbial biomarkers were also found for leaf samples from each urbanization gradient. Moreover, significant differences (R2 = 0.133, p = 0.005) were observed in the phyllosphere microbial structure among the three urbanization gradients. Alpha diversity and co-occurrence patterns of bacterial communities showed that urbanization can strongly reduce the complexity and species richness of the phyllosphere microbial network of camphor trees. Correlation analysis with environmental factors showed that leaf total carbon (C), nitrogen (N), and sulfur (S), as well as leaf C/N, soil pH, and artificial light intensity at night (ALIAN) were the important drivers in determining the divergence of phyllosphere microbial communities across the urbanization gradient. Together, we found that urbanization can affect the composition of the phyllosphere bacterial community of camphor trees, and that the interplay between human activities and plant microbial communities may contribute to shaping the urban microbiome.

Species diversity pattern and its drivers of the understory herbaceous plants in a Chinese subtropical forest

Understory herbaceous plants are an important component of forest ecosystems, playing important roles in species diversity and forest dynamics in forests. However, the current understanding of the biodiversity of forest communities is mostly from woody plants, and knowledge of community structure and species diversity for understory herbaceous plants remains scarce. In a subtropical forest in China, we investigated understory vascular herbaceous diversity from 300 plots (5 × 5 m) in the main growing season. In this study, we analyzed the community structure and diversity pattern of the understory herbaceous community and linked the species diversity pattern to both abiotic and biotic environments. We found a rich diversity of understory herbaceous communities in this forest (81 species belonging to 55 genera), and floristic elements at the genus level were dominated by tropical elements, followed by temperate elements. The diversity pattern of the understory herbaceous showed a significant habitat preference, with the highest diversity in the lowland valleys and then followed by in middle slopes. In addition, herbaceous diversity was significantly affected by both abiotic factors (such as terrain convexity) and biotic factors (such as the diversity of surrounding woody plants). Our study indicated that species diversity of understory herbaceous showed a remarkable habitat preference, such as lowland valleys, and highlighted the importance of both abiotic and biotic environments in driving herbaceous diversity patterns in the subtropical forest understory.

尖峰岭热带天然林不同土层细菌群落多样性和组成的海拔变异规律

PDF HTML阅读 XML下载 导出引用 引用提醒 尖峰岭热带天然林不同土层细菌群落多样性和组成的海拔变异规律 DOI: 10.5846/stxb202203090570 作者: 作者单位: 作者简介: 通讯作者: 中图分类号: 基金项目: 国家自然科学基金项目（32171643，U1703332） The altitudinal patterns of bacterial community diversity and composition at different soil depths in Jianfengling mountain tropical forest Author: Affiliation: Fund Project: The National Natural Science Foundation of China (General Program, Key Program, Major Research Plan) 摘要 | 图/表 | 访问统计 | 参考文献 | 相似文献 | 引证文献 | 资源附件 | 文章评论 摘要:土壤微生物群落结构沿海拔梯度的变异是微生物生物地理学分异和群落空间分布的重要内容，然而，热带森林土壤微生物多样性及其群落特征的海拔模式尚不明确。研究海南省尖峰岭自然保护区0-20cm和20-40cm土壤细菌多样性和群落组成沿海拔梯度（400-1410m）的变化及其与环境因子的关系。结果表明：在0-20cm土壤微生物生物量碳、生物量氮和生物量磷随海拔升高（峰顶降低）而增加，20-40cm土壤微生物生物量碳、生物量氮和生物量磷随海拔升高呈先升高后降低趋势；整体上，变形菌门、放线菌门、酸杆菌门、拟杆菌门、厚壁菌门在0-20cm中占优势，丰度总和占该层细菌总量的88.17%；变形菌门、放线菌门、酸杆菌门、厚壁菌门、绿弯菌门在20-40cm中占优势，丰度总和占该层细菌总量的90.82%；随海拔增加，0-20cm细菌多样性线性减少，20-40cm细菌多样性变化不显著；沿海拔梯度，0-20cm细菌群落组成可分为低（409-1018m），中（1018-1357m）和高（1410m）三个海拔聚集群落，20-40cm细菌群落组成随海拔无显著性变化；两土层细菌多样性与土壤pH显著正相关，土壤细菌群落组成在0-20cm主要受年均温度和pH影响，20-40cm受年均温度和土壤有机碳影响；根据Bray-Curtis指数，0-20cm和20-40cm土壤细菌相似性随地理距离的增加逐渐降低，细菌群落相似性随环境距离的增大也逐渐降低。总之，尖峰岭土壤细菌多样性和群落组成的海拔格局受土壤深度影响，且驱动细菌群落组成变化的因素在土层间不同，暗示在未来气候变化背景下，热带森林0-20cm和20-40cm土壤微生物群落可能具有不同的响应机制。 Abstract:The variation of soil microbial community structure along the altitudinal gradient is an important content of microbial biogeographic differentiation and community spatial distribution. However, the altitudinal pattern of soil microbial diversity and its community characteristics in tropical forests is not clear. This paper studied the changes of bacterial diversity and community composition and their relationship with environmental factors in 0-20cm and 20-40cm soil depths along the altitudinal gradient (400-1410 m) in Jianfengling Nature Reserve, Hainan Province. The results showed that the soil microbial biomass carbon, biomass nitrogen and biomass phosphorus increased with the elevation of 0-20cm (the peak decreased), and the soil microbial biomass carbon, biomass nitrogen and biomass phosphorus increased first and then decreased with the elevation of 20-40cm. On the whole, Proteobacteria, Actinomycetes, Acidobacteria, Bacteroidetes and Firmicutes are dominant in 0-20cm, and the total abundance accounts for 88.17% of the total bacteria in this layer; Proteobacteria, Actinomycetes, Acidobacteria, Firmicutes and Chloroflexi are dominant in 20-40cm, and the total abundance accounts for 90.82% of the total bacteria in this layer. With the increase of altitude, the bacterial diversity decreased linearly in 0-20cm, and that of 20-40cm did not change significantly. The bacterial community composition of 0-20cm can be divided into three communities at low altitude (409-1018 m), medium altitude (1018-1357 m), and high altitude (1410 m) and the bacterial community composition of 20-40cm has no significant change with altitude. There was a significantly positive correlation between bacterial diversity and soil pH in the two soil depths. The composition of soil bacterial community was mainly affected by mean annual temperature and pH at 0-20cm, and by mean annual temperature and soil organic carbon at 20-40cm. According to the Bray Curtis index, the similarity of bacteria in 0-20cm and 20-40cm soil depths decreased with the increase of geographical distance, and the similarity of bacterial community also decreased with the increase of environmental distance. In a word, the altitudinal pattern of soil bacterial diversity and community composition in Jianfengling is affected by soil depth, and the factors driving the change of bacterial community composition are different among soil depths. It is suggested that the soil microbial communities in 0-20cm and 20-40cm of tropical forests may have different response mechanisms under the background of future climate change. 参考文献 相似文献 引证文献

松嫩平原湿地植物群落多样性的环境梯度分布格局及控制因子

PDF HTML阅读 XML下载 导出引用 引用提醒 松嫩平原湿地植物群落多样性的环境梯度分布格局及控制因子 DOI: 10.5846/stxb202201150145 作者: 作者单位: 作者简介: 通讯作者: 中图分类号: 基金项目: 中央高校自主科研项目计划（2572019DF07） Environmental gradient distribution patterns of wetland plant community diversity and controlling factors in Songnen Plain Author: Affiliation: Fund Project: Supported by: The Independent Research Project of the Central Universities of China (2572019DF07) 摘要 | 图/表 | 访问统计 | 参考文献 | 相似文献 | 引证文献 | 资源附件 | 文章评论 摘要:物种丰富度格局及其决定因素是生态学核心问题，但对其形成机制仍缺乏共识。为探究松嫩平原西部半干旱区沿湖岸至高地环境梯度（局地尺度）植物群落多样性分布格局及其决定因素，以沿该梯度依次分布的7种群落（狭叶香蒲沼泽、小香蒲沼泽、芦苇沼泽、草丛沼泽、拂子茅草甸、羊草草甸和榆树疏林）为对象，采用样带网格调查法及聚类分析法划分群落类型，测定物种丰富度、α多样性和β多样性及其环境因子（水位、土壤含水率、有机质等），揭示群落多样性空间分布规律及其形成机制。结果表明，沿湖岸至高地环境梯度：（1）物种丰富度（2.00-18.00）和α多样性（Simpson指数0.12-0.90；Shannon-Wiener指数0.23-2.57和Pielou指数0.34-0.88）总体上均呈类似N字型分布（在下部深水生境狭叶香蒲沼泽最低、中下部季节性积水生境草丛沼泽最高、中上部湿润生境拂子茅草甸较低、上部沙丘干旱生境榆树疏林又较高）；（2）广义的β多样性（Jaccard指数0.56-0.96）可以分解成物种周转（丰富度没有变化的地点间的物种替代）和嵌套（物种贫乏地点是物种丰富地点子集时的物种差异）两个过程，其在该梯度上半段干旱生境和下半段浅水生境相对较高，且主要由周转过程控制。在常年积水生境上最低且仅由嵌套过程控制，而在环境梯度中间地段则由周转和嵌套过程共同控制；（3）物种丰富度和α多样性的主控因子沿该梯度发生了明显转换，在高水位区由水位、有机质和全磷共同控制；中水位区仅由速效磷控制；低水位区由pH和含水率控制。因此，松嫩平原半干旱区沿湖岸至高地环境梯度物种丰富度和α多样性存在明显的空间分布格局及具有较高的β多样性，且其主要形成机制为微地形创造局地空间环境异质性与物种库相互作用共同塑造了植物群落多样性，故在生物多样性管理实践中应对其空间分布格局完整性加以重点保护。 Abstract:Patterns and determinants of species richness are the central issues in ecology, but there is still a lack of consensus on their formation mechanisms. In order to explore the distribution patterns and determinants of community diversity along lakeshore-highland environmental gradient (local scale) in western Songnen Plain semi-arid region, species richness, α diversity, β diversity and environmental factors including water level (WL), soil water content (WC), organic matter (OM), etc. were measured by setting up sample belts and cluster analysis in seven communities (Typha angustifolia wetland, Typha minima wetland, Phragmites australis wetland, hassock wetland, Calamagrostis epigeios meadow, Leymus chinensis meadow and elm sparse forest) along this gradient, to reveal the spatial variation and formation mechanisms of community diversity. The results show that, along lakeshore-highland environmental gradient:(1) both species richness (2.00-18.00) and α diversity (Simpson index 0.12-0.90; Shannon-Wiener index 0.23-2.57 and Pielou index 0.34-0.88) showed a similar N-shaped distribution pattern (Typha angustifolia wetland was the lowest at the lower deep-water habitats, hassock wetland was the highest at the lower-middle seasonal inundated habitat, the lower at the middle-upper wet habitats of Calamagrostis epigeios meadow and the higher at the upper arid habitats of dune elm sparse forest). (2) We partitioned the generalized β diversity (Jaccard index 0.56-0.96) into two components:species turnover (species replacement among sites without changes in richness) and nestedness (species differences among sites when species-poor sites constitute subsets of those with a greater number of taxa). β diversity was relatively high at arid habitats located in upper half and shallow-water habitat located in lower half of the gradient, and it was mainly controlled by turnover processes. At the permanently inundated habitats, it was the lowest one, which is controlled only by nestedness processes. But in the middle of the environmental gradient, the turnover and nestedness processes control it togther. (3) The main controlling factors of species richness and α diversity were significantly converted along the gradient. The high water level area was jointly controlled by water level, organic matter and total phosphorus (TP), the medium water level area was controlled only by available phosphorus (AP) and the low water level area was jointly controlled by pH and water content. Therefore, there were obviously spatial distribution patterns of species richness and α diversity, and higher β diversity along lakeshore-highland environmental gradient in the Songnen Plain semi-arid region. Our results suggested that the main mechanism was the interaction between the local spatial environmental heterogeneity created by microtopography and the region species pool, which jointly shaped the plant community diversity. Thus, its spatial distribution patterns integrity should be protected in the practice of biodiversity management. 参考文献 相似文献 引证文献

The combined effect of surface water and groundwater on environmental heterogeneity reveals the basis of beta diversity pattern in desert oasis communities.

Beta diversity indicates the species turnover with respect to a particular environmental gradient. It is crucial for understanding biodiversity maintenance mechanisms and for prescribing conservation measures. In this study, we aimed to reveal the drivers of beta diversity patterns in desert hinterland oasis communities by establishing three types of surface water disturbance and groundwater depth gradients. The results indicated that the dominant factor driving the beta diversity pattern within the same gradient shifted from soil organic matter to pH, as groundwater depth became shallower and surface water disturbance increased. Among the different gradients, surface water disturbance can have important effects on communities where original water resource conditions are extremely scarce. Under the premise that all habitats are disturbed by low surface water, differences in groundwater depth dominated the shifts in the community species composition. However, when groundwater depth in each habitat was shallow, surface water disturbance had little effect on the change in species composition. For the two components of beta diversity, the main drivers of species turnover pattern was the unique effects of surface water disturbance and soil environmental differences, and the main driver of species nestedness pattern was the common effect of multiple environmental pressures. The results of this study suggest that increasing the disturbance of surface water in dry areas with the help of river flooding will help in promoting vegetation restoration and alleviating the degradation of oases. They also confirm that surface water and groundwater mutually drive the establishment of desert oasis communities. Equal focus on both factors can contribute to the rational ecological recovery of dryland oases and prevent biodiversity loss.

Differential impacts on herbivore diversity and scale dependence of tree diversity in subtropical forests

AbstractPlant diversity has been found to increase herbivore diversity, including abundance, species richness and phylogenetic diversity. However, it is yet to be established at which spatial scale these effects are strongest, because host finding and community assembly may be shaped by host diversity both in local habitat patches and at larger scales.Using arthropod herbivore data collected from a large biodiversity and ecosystem function experiment in China (BEF‐China), we analysed how habitat patch (individual study plots) and larger‐scale (surrounding study plots) tree diversity relates to species richness, abundance, functional diversity and phylogenetic diversity of herbivore assemblages on focal plants.Tree diversity of both the focal habitat patch and larger‐scale patch neighbourhood affected herbivore diversity patterns and host plant selection, with the effect being greater for the former. Furthermore, focal and neighbouring trees that are phylogenetically related were found more likely to share similar herbivores.Synthesis. By focusing on tree diversity effects of both the local habitat patch and wider patch neighbourhoods, our findings highlight the importance of considering additional scales to give a more nuanced understanding of the mechanisms underlying herbivore community structure and diversity patterns in species‐rich forests.

Plant-soil feedback in the ‘real world’: how does fire fit into all of this?

AimsPlant–soil feedback (PSF) is an important mechanism controlling plant growth, vegetation dynamics, and longer-term and larger-scale patterns of plant community diversity. We know that feedback between plants and soil biota depends on several external factors, such as nutrient and water availability, and interactions with neighbouring plants. We argue that in the ‘real world’, PSF are not working in isolation but instead proceed within a complex context of multiple interacting factors. Fire is one of those complex external factors which could greatly alter PSF by re-setting or re-directing plant-soil biota interactions.MethodsWe reviewed key literature on the effects of fire on soil biota and soil physicochemical properties with soil depth, to generate predictions on the complex effects of fire on PSF.ResultsWe highlight that fire has strong potential to directly and indirectly affect the strength of PSF. To what extent this influences longer-term plant community trajectories depends on the interactions between fire characteristics and ecosystem type. Here, we conceptualized these effects of fire on soil properties and biota, and then discuss the main pathways through which fire should alter PSF.ConclusionsWe think that PSF processes should be nullified under and after fire. Average neutral PSF responses are expected to be more common in the short-term or within the timeframe required for major soil microbial players to regain their pre-fire abundances and diversity. We conclude by providing directions for future research and possible methods to study fire effects on PSF both in the field and under controlled conditions.

Water-energy relationships shape the phylogenetic diversity of terricolous lichen communities in Mediterranean mountains: Implications for conservation in a climate change scenario

Lichens are symbiotic organisms sensitive to climate change and susceptible to a severe decline in diversity, especially in high elevation environments that are already threatened. In this study, we focused on water-energy relationships derived from climatic variables and phylogenetic diversity indices of terricolous lichen communities occurring on a representative Mediterranean mountain. We hypothesized that the variation of precipitation and temperature and their interaction along the altitudinal gradient will shape the phylogenetic diversity and structure of lichen communities. Our results reveal that dry and arid conditions lead to a strong loss in phylogenetic diversity with consequent impoverishment of high elevation lichen communities under a climate change scenario. The interaction between variables, reflecting water-energy relationships with phylogenetic and community diversity patterns, suggests that in a future climate change scenario, the novel climatic conditions may reduce the capability of the species to survive harsher conditions, and Mediterranean mountains may face a severe loss of genetic diversity in a climate change scenario.

Ocean kinetic energy and photosynthetic biomass are important drivers of planktonic foraminifera diversity in the Atlantic Ocean

To assess the anthropogenic effect on biodiversity, it is essential to understand the global diversity distribution of the major groups at the base of the food chain, ideally before global warming initiation (1850 Common Era CE). Since organisms in the plankton are highly interconnected and carbonate synthesizing species have a good preservation state in the Atlantic Ocean, the diversity distribution pattern of planktonic foraminifera from 1741 core-top surface sediment samples (expanded ForCenS database) provides a case study to comprehend centennial to decadal time-averaged diversity patterns at pre-1970 CE times, the tempo of the substantial increase in tropospheric warming. In this work, it is hypothesized and tested for the first time, that the large-scale diversity patterns of foraminifera communities are determined by sea surface temperature (SST, representing energy), Chl-a (a surrogate for photosynthetic biomass), and ocean kinetic energy (as EKE). Alpha diversity was estimated using species richness (S), Shannon Wiener index (H), and Simpson evenness (E), and mapped using geostatistical approaches. The three indices are significantly related to SST, Chl-a, and EKE (71-88% of the deviance in the generalized additive mixed model, including a spatial component). Beta diversity was studied through species turnover using gradient forest analysis (59% of the variation). The primary community thresholds of foraminifera species turnover were associated with 5-10 °C and 22-28 °C SST, 0.05-0.15 mg m-3 Chl-a, and 1.2-2.0 cm2 s-2 log10 EKE energy, respectively. Six of the most important foraminifera species identified for the environmental thresholds of beta diversity are also fundamental in transfer functions, further reinforcing the approaches used. The geographic location of the transition between the four main biogeographic zones was redefined based on the results of beta diversity analysis and incorporating the new datasets, identifying the major marine latitudinal gradients, the most important upwelling areas (Benguela Current, Canary Current), the Equatorial divergence, and the subtropical fronts (Gulf Stream-North Atlantic Drift path in the north, and the South Atlantic current in the south). In conclusion, we provide statistical proof that energy (SST), food supply (Chl-a), and currents (EKE) are the main environmental drivers shaping planktonic foraminifera diversity in the Atlantic ocean and define the associated thresholds for species change on those variables.

The temporal and spatial endophytic fungal community of Huperzia serrata: diversity and relevance to huperzine A production by the host

BackgroundPlants maintain the steady-state balance of the mutually beneficial symbiosis relationship with their endophytic fungi through secondary metabolites. Meanwhile endophytic fungi can serve as biological inducers to promote the biosynthesis and accumulation of valuable secondary metabolites in host plants through a variety of ways. The composition and structure of endophytic fungal community are affected by many factors, including tissues, seasons and so on. In this work, we studied the community diversity, temporal and spatial pattern of endophytic fungi detected from the roots, stems and leaves of Huperzia serrata in different seasons. The correlation between endophytic fungi and huperzine A (HupA) content in plants was analyzed.ResultsA total of 7005 operational taxonomic units were detected, and all strains were identified as 14 phyla, 54 classes, 140 orders, 351 families and 742 genera. Alpha diversity analysis showed that the diversity of endophytic fungi in stem and leaf was higher than that in root, and the diversity in summer (August) was lower than that in other months. NMDS analysis showed that the endophytic fungal communities of leaves, stems and roots were significantly different, and the root and leaf communities were also different between four seasons. Through correlation analysis, it was found that 33 genera of the endophytic fungi of H. serrata showed a significant positive correlation with the content of HupA (p < 0.05), of which 13 genera (Strelitziana, Devriesia, Articulospora, Derxomyces, Cyphellophora, Trechispora, Kurtzmanomyces, Capnobotryella, Erythrobasidium, Camptophora, Stagonospora, Lachnum, Golubevia) showed a highly significant positive correlation with the content of HupA (p < 0.01). These endophytic fungi may have the potential to promote the biosynthesis and accumulation of HupA in plant.ConclusionsThis report is the first time to analyze the diversity of endophytic fungi in tissues of H. serrata in different seasons, which proves that there is variability in different tissues and seasonal distribution patterns. These findings provide references to the study of endophytic fungi of H. serrata.

Globally-distributed microbial eukaryotes exhibit endemism at deep-sea hydrothermal vents.

Single-celled microbial eukaryotes inhabit deep-sea hydrothermal vent environments and play critical ecological roles in the vent-associated microbial food web. 18S rRNA amplicon sequencing of diffuse venting fluids from four geographically- and geochemically-distinct hydrothermal vent fields was applied to investigate community diversity patterns among protistan assemblages. The four vent fields include Axial Seamount at the Juan de Fuca Ridge, Sea Cliff and Apollo at the Gorda Ridge, all in the NE Pacific Ocean, and Piccard and Von Damm at the Mid-Cayman Rise in the Caribbean Sea. We describe species diversity patterns with respect to hydrothermal vent field and sample type, identify putative vent endemic microbial eukaryotes, and test how vent fluid geochemistry may influence microbial community diversity. At a semi-global scale, microbial eukaryotic communities at deep-sea vents were composed of similar proportions of dinoflagellates, ciliates, Rhizaria, and stramenopiles. Individual vent fields supported distinct and highly diverse assemblages of protists that included potentially endemic or novel vent-associated strains. These findings represent a census of deep-sea hydrothermal vent protistan communities. Protistan diversity, which is shaped by the hydrothermal vent environment at a local scale, ultimately influences the vent-associated microbial food web and the broader deep-sea carbon cycle.

Summer decapod crustacean larval communities along the eastern Spanish Mediterranean coast.

Decapod crustaceans are a diverse group englobing several species of commercial and ecological interest. In the Mediterranean Sea, decapod crustacean fisheries are among the most profitable, although in many cases their early life stages are poorly known. In this study, we tackle the composition and diversity patterns of the decapod larval communities along the eastern Spanish Mediterranean coast. Zooplankton sampling was carried out in surface waters at 101 stations from July 20th to August 31st 2016, over bottom depths between 90 and 1840 m. All shrimp larvae were identified to the lowest possible taxonomical level, and larvae from Anomura, Achelata and Brachyura were left at infraorder level. No larvae of Astacidea or Polychelida were found. The total zooplankton volume was estimated. A total of 20,022 decapod crustacean larvae were identified, focusing on shrimp taxa (suborder Dendrobranchiata and infraorder Caridea). Both zooplankton volume and decapod larval density values were higher in the northern part of the studied area, cut by deep submarine canyons. After assessing the diversity parameters of the decapod larval community, we present the summer mesoscale larval distribution of several species of commercial interest such as the caramote prawn (Penaeus kerathurus) or the deep-water rose shrimp (Parapenaeus longirostris). The northern submarine canyons are dominated by the presence of Penaeoidea, being the deep-sea shrimp Aristeus antennatus the dominant species in the community in this area, while the Sergestoidea are more abundant in the southern zone. This is the largest-scale study on decapod larvae mesoscale distribution in the Mediterranean Sea.

Functional space expansion driven by transitions between energetically advantageous traits in the deep sea.

Climate change is shifting community structure and biodiversity on a global scale, in part due to alterations of chemical and thermal energy availability. These changes may impact ecosystem functioning through their influence on functional diversity. We investigate patterns of functional diversity, functional niches, and functional traits in bivalve communities across the energetic gradient of the deep Atlantic Ocean. We use the functional traits feeding type, tiering, and motility level to define the axes of functional space and the unique combinations of these traits as functional niches. We find that increased energy affords new species, added into functional space through niche expansion rather than niche packing. Underlying this pattern are complex dynamics of gains and losses of individual functional niches, with few adapted to the low- and high-energy extremes, and most occurring at intermediate energy. Adaptive qualities of specific traits are evidenced by those functional niches occurring at energetic extremes. Tradeoffs between these traits within the intermediate energy zone underlie an increased coexistence of functional niches, which in turn drives a unimodal pattern of functional niches and expansion of used functional space. This work suggests that energy-limited communities may be especially vulnerable to continued shifts in food availability through the Anthropocene.

Climax forest has a higher soil bacterial diversity but lower soil nutrient contents than degraded forests in temperate northern China.

Bacteria are a crucial component of forest soil biodiversity and play an important role in numerous ecosystem processes. Here, we studied the patterns of soil bacterial community diversity and structure in a climax forest (Larix gmelinii; LG) compared with those in degraded forest ecosystems of four forest vegetation types (BD, Betula dahurica; BP, Betula platyphylla; QM, Quercus mongolica; and LGQM, a mixed coniferous-broadleaved forest composed of Larix gmelinii and Quercus mongolica) in the Heilongjiang Zhongyangzhan Black-billed Capercaillie Nature Reserve in northern China, using Illumina MiSeq sequencing of 16 S rRNA genes. Soil physicochemical properties (pH, soil organic carbon=SOC, total nitrogen=TN, carbon/nitrogen=C/N, total phosphorous=TP, available nitrogen=AN, available phosphorous=AP) differed significantly (p < .05) among the five forests. SOC, C/N, TP, AN, and AP were highest in QM, whereas SOC was lowest in LGQM. Soil pH was lowest in BD and highest in LGQM. α diversity was highest in LG and lowest in QM. The soil bacterial community composition in the climax forest was significantly different from that in the four degraded forests (p < .05). The dominant bacterial phyla were Acidobacteria, Proteobacteria, Verrucomicrobia, Bacteroidetes, Actinobacteria, Gemmatimonadetes, Firmicutes, Chloroflexi, and Rokubacteria. The highest relative abundances of these phyla were: 30.7% for Acidobacteria in LGQM, 42.6% for Proteobacteria in LG, 17.6% for Verrucomicrobia in BD, 5.5% for Firmicutes in BP, and 6.9% for Actinobacteria in QM. The dominant bacterial genera across the five forest vegetation types were Bryobacter and some poorly characterized taxa (e.g., Candidatus_Udaeobacter and Candidatus_Solibacter). Redundancy analysis indicated that SOC, C/N, TP, AN, and AP were the main soil physicochemical properties that shaped the bacterial communities. Our study revealed distinct bacterial diversity and composition in the climax forest compared with values in degraded forests, suggesting that the biotic and abiotic factors associated with climax ecosystems play an important role in shaping soil bacterial community structure and thus biogeochemical functions. The results of this study contribute to a deeper understanding and better predictions of the network among belowground systems and of the functions and services of degraded forests compared with climax ecosystems.

Emergent phases of ecological diversity and dynamics mapped in microcosms.

From tropical forests to gut microbiomes, ecological communities host notably high numbers of coexisting species. Beyond high biodiversity, communities exhibit a range of complex dynamics that are difficult to explain under a unified framework. Using bacterial microcosms, we performed a direct test of theory predicting that simple community-level features dictate emergent behaviors of communities. As either the number of species or the strength of interactions increases, we show that microbial ecosystems transition between three distinct dynamical phases, from a stable equilibrium in which all species coexist to partial coexistence to emergence of persistent fluctuations in species abundances, in the order predicted by theory. Under fixed conditions, high biodiversity and fluctuations reinforce each other. Our results demonstrate predictable emergent patterns of diversity and dynamics in ecological communities.

Soil nutrients and plant diversity affect ectomycorrhizal fungal community structure and functional traits across three subalpine coniferous forests.

The symbiotic relationship between ectomycorrhizal fungi (EMF) and the roots of host plants is significantly important in regulating the health and stability of ecosystems, especially of those such as the climate warming affected subalpine forest ecosystems. Therefore, from the coniferous forest systems located in the Southern Qinghai-Tibetan Plateau, root tips from three forest tree species: Pinus wallichiana, Abies spectabilis and Picea spinulosa, were collected to look for the local causes of EMF community composition and diversity patterns. The EMF colonization rate, diversity and taxonomic community structure were determined by morphotyping and sanger sequencing of the fungal ITS gene from the root tip samples. Soil exploration types were identified based on the morphologies of the ectomycorrhizas, coupled with soil properties analysis and plant diversity survey. Contrasting patterns of EMF community and functional diversity were found across the studied three forests types dominated by different coniferous tree species. In terms of associations between soil and EMF properties, the total phosphorus (TP) and nitrate (NO3−) contents in soil negatively correlated with the colonization rate and the Shannon diversity index of EMF in contrast to the positive relationship between TP and EMF richness. The soil total nitrogen (TN), ammonium (NH4+) and plant diversity together caused 57.6% of the total variations in the EMF taxonomic community structure at the three investigated forest systems. Whereas based on the soil exploration types alone, NH4+ and TN explained 74.2% of variance in the EMF community structures. Overall, the findings of this study leverage our understanding of EMF dynamics and local influencing factors in coniferous forests dominated by different tree species within the subalpine climatic zone.

Pioneer palm tree as an ecosystem engineer: Effects on ant community structure

AbstractEcosystem engineer species can affect the assembly and maintenance of biological communities by altering local environmental conditions. Several palm tree species play this role in changing the surrounding environment mainly through the fall of entire rachis and the formation of a thick and homogeneous leaf litter layer beneath the canopy. However, their impact on soil animal communities remains unclear. In particular, soil organisms (e.g. ants) can be negatively affected by palm‐driven local changes, since they are especially susceptible to leaf litter changes. Our objective was to test if the presence of palm trees reduces alpha and beta diversities of ant communities at taxonomic and morphometric levels. We also tested if palm tree understory mound (debris pile just below the canopy) area and population density reduce ant community alpha and beta diversities (at the taxonomic and morphometric levels) in tropical rainforests. To do so, we described taxonomic and morphometric diversity patterns of ant communities in a relictual landscape of the Atlantic Rainforest (northeastern Brazil) using Hill's numbers approach in two habitats: understory mounds surrounding the palm tree species Acrocomia intumescens, and forest understory without A. intumescens (non‐palm understory). Our main findings were: (1) Taxonomic and morphometric alpha diversity were similar between A. intumescens understory mound and non‐palm understory; (2) Ant communities in non‐palm understory presented higher beta diversity than communities from A. intumescens understory mounds considering both rare species and morphometric traits; (3) A. intumescens understory mound area negatively affected common and dominant ant species; and (4) the interaction between understory mound area and the population density of A. intumescens affected dominant ant species in complex ways and the outcomes depend on the balance between both predictors. Our findings point to an important role of palm trees as ecosystem engineers in reducing ant biodiversity and changing the functional signature of human‐modified tropical rainforests.

Patterns of community composition and diversity in latent fungi of living Quercus serrata trunks across a range of oak wilt prevalence and climate variables in Japan

Given that forest dieback due to emerging pests is increasing under global warming, understanding the relationships between pests, climate, and forest biodiversity is an urgent priority. In Japan, mass attacks of an ambrosia beetle, vectoring a pathogenic fungus, cause oak wilt outbreaks in recent decades. Here, the associations of oak wilt and climate with wood-inhabiting fungal communities in apparently healthy Quercus serrata trunks were investigated using DNA metabarcoding in seven sites along a climatic gradient in Japan. Amplicon sequencing of the fungal internal transcribed spacer 1 region generated 1,339,958 sequence reads containing 879 fungal operational taxonomic units (OTUs) in 234 wood samples. OTU compositions were significantly different between sites with and without oak wilt. OTU richness increased with temperature and precipitation at sites where oak wilt was present, but this relationship was not observed at sites without oak wilt, possibly due to interaction between oak wilt and climate. • Oak wilt disease is correlated with fungal communities in living oak trees. • OTU richness increased with temperature and precipitation at sites with oak wilt. • OTU richness was not correlated with macroclimate at sites without oak wilt. • Oak wilt was correlated with absence of some white-rot decomposer fungi. • Precipitation had a negative correlation with the species richness of brown-rot fungi.