Ciliate Community Research Articles

Patchiness of Ciliate Communities Sampled at Varying Spatial Scales along the New England Shelf.

Although protists (microbial eukaryotes) provide an important link between bacteria and Metazoa in food webs, we do not yet have a clear understanding of the spatial scales on which protist diversity varies. Here, we use a combination of DNA fingerprinting (denaturant gradient gel electrophoresis or DGGE) and high-throughput sequencing (HTS) to assess the ciliate community in the class Spirotrichea at varying scales of 1–3 km sampled in three locations separated by at least 25 km—offshore, midshelf and inshore—along the New England shelf. Analyses of both abundant community (DGGE) and the total community (HTS) members reveal that: 1) ciliate communities are patchily distributed inshore (i.e. the middle station of a transect is distinct from its two neighboring stations), whereas communities are more homogeneous among samples within the midshelf and offshore stations; 2) a ciliate closely related to Pelagostrobilidium paraepacrum ‘blooms’ inshore and; 3) environmental factors may differentially impact the distributions of individual ciliates (i.e. OTUs) rather than the community as a whole as OTUs tend to show distinct biogeographies (e.g. some OTUs are restricted to the offshore locations, some to the surface, etc.). Together, these data show the complexity underlying the spatial distributions of marine protists, and suggest that biogeography may be a property of ciliate species rather than communities.

Interaction of ciliate communities with cyanobacterial water bloom in a shallow, hypertrophic reservoir

The response of ciliate communities to cyanobacterial bloom was investigated in a shallow, hypertrophic reservoir in Slovakia, central Europe. Seasonal dynamics of ciliate communities corresponded negatively with course of water bloom formation. The highest numbers and abundances of ciliate species occurred during the spring season when cyanobacterial bloom was not fully developed, while there was an abrupt decrease in both numbers and abundances at the beginning of summer when water bloom culminated. Cyanobacterial blooming thus significantly lowered diversity and equitability of ciliate communities: many rare and sporadic species disappeared and few common taxa flourished and dominated. Nonetheless, these leading ciliates formed a functionally diverse assemblage whose members showed mostly positive contemporaneous and only rarely time-shifted interactions. There were fine filter feeders (Cinetochilum margaritaceum, Dexiotricha granulosa, Paramecium caudatum and Spirostomum teres) grazing heterotrophic bacteria and picocyanobacteria, omnivorous fine to coarse filter feeders (Frontonia leucas) as well as hunters (Coleps hirtus, Holophrya teres and Loxophyllum helus) looking for an individual prey. Also a comparatively rich, anaerobic coenosis comprising various bacterivorous armophoreans and plagiopyleans, developed at the bottom of the reservoir. Our study documents that ciliates form functionally diverse communities with potential to control cyanobacterial blooms in hypertrophic reservoirs.

Evolution alters the consequences of invasions in experimental communities.

Evolution has the capacity to alter the course of biological invasions, although such changes remain mostly unexplored by experiments. Integrating evolution into studies of invasions is important, because species traits can potentially evolve in ways that either moderate or exacerbate the impacts of invasions. We have assessed whether species evolved during experimental invasions by comparing the performance of founder populations and their potentially evolved descendants in communities of ciliates and rotifers. Residents (analogous to native species) that have previous experience with invaders consistently reduced the performance of naive invaders, supporting the emergence of increased biotic resistance as one consequence of evolution during invasions. Experienced invaders exhibited both increased and decreased performance depending on the invader species considered. Through its influence on performance and species abundance, evolution also changed community composition during the course of invasions. The idiosyncratic patterns of evolutionary changes in invading and resident species complicate predictions about the long-term consequences of invasions from initial post-invasion dynamics.

Ciliate community structure and interactions within the planktonic food web in two alpine lakes of contrasting transparency.

Summary Climate warming is accelerating the retreat of glaciers and recently, many ‘new’ glacial turbid lakes have been created. In the course of time, the loss of the hydrological connectivity to a glacier causes, however, changes in their water turbidity and turns these ecosystems into clear ones.To understand potential differences in the food‐web structure between glacier‐fed turbid and clear alpine lakes, we sampled ciliates, phyto‐, bacterio‐ and zooplankton in one clear and one glacial turbid alpine lake, and measured key physicochemical parameters. In particular, we focused on the ciliate community and the potential drivers for their abundance distribution.In both lakes, the zooplankton community was similar and dominated by the copepod Cyclops abyssorum tatricus and rotifers including Polyarthra dolichoptera, Keratella hiemalis, Keratella cochlearis and Notholca squamula. The phytoplankton community structure differed and it was dominated by the planktonic diatom Fragilaria tenera and the cryptophyte alga Plagioselmis nannoplanctica in the glacial turbid lake, while chrysophytes and dinoflagellates were predominant in the clear one.Ciliate abundance and richness were higher in the glacial turbid lake (∼4000–27 800 Ind L−1, up to 29 species) than in the clear lake (∼570–7150 Ind L−1, up to eight species). The dominant species were Balanion planctonicum, Askenasia cf. chlorelligera, Urotricha cf. furcata and Mesodinium cf. acarus. The same species dominated in both lakes, except for Mesodinium cf. acarus and some particle‐associated ciliates, which occurred exclusively in the glacial turbid lake. The relative underwater solar irradiance (i.e. percentage of PAR and UVR at depth) significantly explained their abundance distribution pattern, especially in the clear water lake. In the glacial turbid lake, the abundance of the dominating ciliate taxa was mainly explained by the presence of predatory zooplankton.Our results revealed an unexpected high abundance and richness of protists (algae, ciliates) in the glacial turbid lake. This type of lake likely offers more suitable environmental conditions and resource niches for protists than the clear and highly UV transparent lake.

The Use of Ciliates (Ciliophora) for Bioassay of the Toxicity of Insecticides

Abstract Field and laboratory experiments have been carried out to determine the degree of toxicity in the soil community of ciliates of two insecticides: “Confidor Extra” and “Decis Profi” at concentrations of 80 mg/l, 50mg/l and 25mg/l. Laboratory experiments were performed with the soil ciliates species Colpoda cucullus (Müller, 1773). Changes in phagocytosis and osmoregulation were used as indicators of the survival and physiological parameters. In addition to the laboratory experiments, we carried out field experiments on experimental plots (50 × 50 cm) of the virgin soil. Field experiments were carried out in 5 replications. The results showed that the modification of physiological parameters is thinner exponent toxicity than survival.

Ecology of ciliates in microbial mats in meltwater streams, King George Island, maritime Antarctica

Microbial communities living in microbial mats are known to constitute early indicators of ecosystem disturbance, but little is known about their response to environmental factors in the Antarctic. This paper presents the first major study on ciliates from microbial mats in streams on King George Island (Antarctica). The objective of the study is to investigate the structure and spatial distribution of ciliate communities and to identify the environmental factors determining the structure of the assemblages. Additionally, we compared ciliate communities inhabiting streams on King George Island with other isolated islands of the maritime Antarctic. Samples of microbial mats for ciliate analysis were collected from three streams fed by Ecology Glacier. Sampling was carried out three times from 17 January to 24 February 2012. The total numbers of ciliates were dominated by small taxa recognized as cosmopolitan, also recorded on other islands of the maritime Antarctic. The species richness, abundance, and biomass of ciliates differed significantly between the stations studied, with the lowest numbers in the middle course of the stream and the highest numbers in the microhabitats closest to the glacier and at the site where the stream empties into the pond. Variables that significantly explained the variance in ciliate communities in the transects investigated were total organic carbon, total nitrogen, temperature, dissolved oxygen, and conductivity. Further research is required to explain the impact of biotic factors on the presence of ciliates, including the abundance of bacteria, microalgae, and small metazoa.

The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates.

Illumina reads of the SSU-rDNA-V9 region obtained from the circumglobal Tara Oceans expedition allow the investigation of protistan plankton diversity patterns on a global scale. We analyzed 6,137,350 V9-amplicons from ocean surface waters and the deep chlorophyll maximum, which were taxonomically assigned to the phylum Ciliophora. For open ocean samples global planktonic ciliate diversity is relatively low (ca. 1,300 observed and predicted ciliate OTUs). We found that 17% of all detected ciliate OTUs occurred in all oceanic regions under study. On average, local ciliate OTU richness represented 27% of the global ciliate OTU richness, indicating that a large proportion of ciliates is widely distributed. Yet, more than half of these OTUs shared <90% sequence similarity with reference sequences of described ciliates. While alpha-diversity measures (richness and exp(Shannon H)) are hardly affected by contemporary environmental conditions, species (OTU) turnover and community similarity (β-diversity) across taxonomic groups showed strong correlation to environmental parameters. Logistic regression models predicted significant correlations between the occurrence of specific ciliate genera and individual nutrients, the oceanic carbonate system and temperature. Planktonic ciliates displayed distinct vertical distributions relative to chlorophyll a. In contrast, the Tara Oceans dataset did not reveal any evidence that latitude is structuring ciliate communities.

Ciliated protozoa community of a combined UASB-activated sludge system in southeastern Brazil.

The aims of the present study were (1) to evaluate the abundance and taxonomic composition of ciliated protozoa in the activated sludge of a full-scale combined anaerobic-aerobic system operating in a tropical country and (2) to study the relationship between the effluent quality, the physicochemical variables, and the ciliates present in the operating system. The total ciliate fauna of the activated sludge of the Piçarrão Wastewater Treatment Plant (Piçarrão WWTP) was composed of 36 morphospecies belonging to 33 genera. These included 21 species observed in the activated sludge samples on the day of collection and 15 species found in cultures. The activated sludge of the Piçarrão WWTP contained a diversified ciliate community composed mainly of indicator organisms. The most frequently occurring morphospecies were Aspidisca cicada, Vorticella spp., Gastronauta aloisi, Acineria uncinata, and Epistylis plicatilis complex. These results showed that satisfactory operating conditions prevailed at the Piçarrão WWTP. In the combined UASB-activated sludge system, the presence of Aspidisca cicada suggests the occurrence of denitrification in the process while the presence of Acineria uncinata and G. alosi indicates the removal of carbonaceous organic matter.

What Underpins the Trophic Networks of the Plankton in Shallow Oxbow Lakes?

The aim of this study was to determine the relationships in the microbial trophic network underpinning them about communities of plankton ciliates in shallow oxbow lakes of the Vistula River in southern Poland (Jeziorzany 1, Jeziorzany 2, Piekary, Tyniec). The plankton components (phytoplankton, ciliates, zooplankton) were grouped by dietary preference. The studied oxbows differed in physicochemical parameters and in phytoplankton. Cyanobacteria dominated in the total biomass of phytoplankton in the Tyniec oxbow, big green algae (>30 μm) in Piekary and Jeziorzany 1, and euglenoids in Jeziorzany 2 oxbow. The dominance pattern of ciliates and zooplankton were similar in all oxbows. Algivorous ciliates were the main dominant ciliates, and among zooplankton the dominant ones were herbivores that feed on small algae (<30 μm). The oxbows differed significantly in total phytoplankton biomass, cyanobacteria biomass, euglenoid biomass, small green algae (<30 μm) biomass, total biomass of zooplankton, biomass of zooplankton feeding on bacteria + algae, and biomass of zooplankton feeding on big algae (>30 μm). There was no significant differences in ciliate biomass between oxbows. In redundancy analyses, the variability at the trophic groups of plankton was described by explanatory variables in 42.3 %, and positive relationships were found: e.g., between omnivorous zooplankton biomass, the biomass of ciliates feeding on bacteria + algae, and NH4 level; between euglenoid biomass and dinoflagellate biomass; and between cyanobacteria biomass and bacterivorous ciliate biomass. Spearman correlation analysis revealed several relationships between different groups of plankton. In general, phytoplankton group shows more connection among themselves and with different zooplankton groups, e.g., phytoplankton biomass with herbivorous zooplankton biomass (−0.33); and cyanobacteria biomass with dinoflagellate biomass (0.65). Ciliates showed more connections among their trophic groups (e.g., algivorous ciliate biomass with omnivorous ciliate biomass, 0.78) and with zooplankton trophic groups (e.g., biomass of algivorous + bacterivorous ciliates with biomass of predator zooplankton, −0.36). Simple correlations analysis revealed the trophic food web network connectivity among plankton organisms, indicating the flow of organic matter from phytoplankton to zooplankton and from ciliates to zooplankton. Our study sheds light on the trophic relations among plankton ciliates, which are neglected in research but often form a large percentage of zooplankton biomass. In the studied oxbows, ciliate forms 6.7 % of total zooplankton biomass in Jeziorzany 1 and up to 44.5 % of it in the Piekary oxbow.

Selective predation by a harpacticoid copepod on ciliates in phytotelmata: a laboratory experiment

Copepods are the most numerous metazoans in water-filled phytotelmata formed by Heliconia and Calathea floral bracts in cloud forests of Cordillera de la Costa, Northern Venezuela. We estimated the potential effect of copepods on ciliate community structure in this habitat with a laboratory experiment. Predation effects of five life stages of a harpacticoid copepod on a mixed culture of five bacterivorous ciliate species were measured during a 48-hour incubation. The predation effect depended on copepod life stage and on ciliate prey species. The abundances of Colpoda inflata, Tetrahymena pyriformis, and Colpidium kleini were significantly reduced, the actual effect strongly depending on copepod developmental stage. No detectable predation was observed on Paramecium aurelia or Tachysoma pellionellum. The results suggest that predation by harpacticoid copepods is an important factor influencing ciliate community structure in phytotelmata.

Ecology of Ciliates in Microbial Mats in Small Ponds: Relationship to Environmental Parameters (King George Island, Maritime Antarctica)

The objective of the study was to investigate the taxonomic structure and spatial distribution of ciliate communities, and to identify the environmental factors determining the taxonomic structure of the assemblages. Additionally, we compared ciliate communities inhabiting ponds on King George Island (Antarctica) with those on other islands of the maritime Antarctic. The taxonomic richness, abundance and biomass of ciliates in microbial mats varied among ponds increasing with their eutrophication level. As the level of eutrophication increased, there was a decrease in the abundance of predatory and omnivorous ciliates and a decrease in that of algivorous taxa. The canonical correspondence analyses of the spatial distribution of ciliates showed that all environmental variables together explained 76% of the total variance. The Monte Carlo permutation test showed that dissolved orthophosphates, nitrate and total organic carbon had the most significant effect on the distribution of ciliates. The proportions o...

Unexpected biodiversity of ciliates in marine samples from below the photic zone.

Marine microbial eukaryotes play critical roles in planktonic food webs and have been described as most diverse in the photic zone where productivity is high. We used high-throughput sequencing (HTS) to analyse the spatial distribution of planktonic ciliate diversity from shallow waters (<30m depth) to beyond the continental shelf (>800m depth) along a 163km transect off the coast of New England, USA. We focus on ciliates in the subclasses Oligotrichia and Choreotrichia (class Spirotrichea), as these taxa are major components of marine food webs. We did not observe the decrease of diversity below the photic zone expected based on productivity and previous analyses. Instead, we saw an increase of diversity with depth. We also observed that the ciliate communities assessed by HTS cluster by depth layer and degree of water column stratification, suggesting that community assembly is driven by environmental factors. Across our samples, abundant OTUs tend to match previously characterized morphospecies while rare OTUs are more often undescribed, consistent with the idea that species in the rare biosphere remain to be characterized by microscopy. Finally, samples taken below the photic zone also reveal the prevalence of two uncharacterized (i.e. lacking sequenced morphospecies) clades - clusters X1 and X2 - that are enriched within the nano-sized fraction (2-10μm) and are defined by deletions within the region of the SSU-rDNA analysed here. Together, these data reinforce that we still have much to learn about microbial diversity in marine ecosystems, especially in deep-waters that may be a reservoir for rare species and uncharacterized taxa.

Anthropogenic disturbances influencing ciliate functional feeding groups in impacted tropical streams.

Anthropogenic disturbances change the trophic structure of streams, ultimately affecting ecosystem functioning. We investigated the effects of human disturbances, mainly organic pollution, on ciliate functional feeding groups (FFG) in 10 tropical streams near agricultural and urban habitats, in the dry and rainy seasons. We hypothesised that the organic pollution would affect the ciliate composition and that the richness and abundance of ciliate FFG would be associated with different disturbances, such that an increase in the load of organic matter would result in an increase in the percentage of bacterivores ciliates, while streams with low organic matter concentration and wide canopy openness will determine a higher contribution of algivorous ciliates. Our results corroborate our hypothesis of an increased development of bacterivorous ciliates with increasing organic pollution, but only in the abundance of this FFG. Also, algivorous ciliates were found to be related to riparian vegetation clearing. Thus, ciliate FFG accurately reflected different anthropogenic disturbances, revealing a change in the trophic structure of the streams. In addition, we found that organic pollution can lead to both taxonomic and functional homogenization of the ciliate community, which implies serious consequences for ecosystem functioning.

A first description of ciliate assemblages in a subtropical, eutrophic bay, South China Sea: species assemblage and environmental correlates

The ciliate community together with physical-chemical variables was investigated in a subtropical, eutrophic bay of the South China Sea from January 7–10 (dry season) and April 27–30 (wet season), 2012. Both temperature and salinity exhibited typical seasonality. A total of 27 species of ciliates belonging to 19 genera were identified, and the dominant species were Strombidium globosaneum in January and Codonella rapa in April. The composition and abundance exhibited spatial and temporal fluctuations, with total mean abundance of ciliates in April (1219 ± 919 ind l-1 ), was much higher than that in January (283 ± 137 ind l-1 ). Spatially, high species numbers were found mainly near the mouth of the estuary, and the abundance decreased from inside to the mouth of the bay. Statistical analysis showed that ciliate assemblages were closely related to the environmental variables. The distribution patterns of salinity and chlorophyll a concentration were similar, suggesting that, prey abundance may correlate significantly with ciliate abundance, and salinity may not be the main factor explaining the spatial variation in the ciliate community in the study area.

Formation of symbiotic communities of ciliates, algae, and cyanobacteria in a waterbody of the Ptich’ya Gavan nature park (Omsk)

This article deals with the formation of symbiotic communities in a waterbody of the Ptich’ya Gavan nature park (Omsk) at the end of May 2010. The samples were collected by plankton nets, fixed in formalin, and examined with the use of optical microscope. The symbiotic communities consist of ciliates Ophrydium versatile and 35 other species and forms of algae and cyanobacteria inhabiting the pelagic zone of the waterbody. It is found that the species composition of producers in these communities is formed as a result of the higher adaptation of some species to specific conditions regardless of their abundance. The species with high tolerance to abiotic environmental factors (cosmopolitan species), inhabitants of polluted zones, and species with high tolerance to the concentrations of organic matter in water are most abundant.

An approach to analyzing spatial patterns in annual dynamics of planktonic ciliate communities and their environmental drivers in marine ecosystems

The environmental drivers to shape the spatial patterns in annual dynamics of the planktonic ciliate communities were studied based on an annual dataset from a bay, northern Yellow Sea. Samples were biweekly collected at five stations with different environmental condition status during a 1-year period. The second-stage-analysis-based multivariate approaches were used to reveal the internal dynamics in annual patterns of the ciliate assemblages. Results showed that: (a) there was a clear spatial variability in annual dynamics among five stations; (b) the dominant species represented different succession dynamics among four samples stations during the 1-year cycle; and (c) the spatial variations in annual patterns of the ciliates were significantly correlated with nutrients, alone or in combination with salinity and dissolve oxygen (DO). Thus, it is suggested that the nutrients may be the main drivers to shape the spatial patterns in annual dynamics of planktonic ciliate communities in marine ecosystems.

Hypersaline conditions cause distinct ciliate community structure in a South African estuarine lake system

Hypersaline conditions cause distinct ciliate community structure in a South African estuarine lake system

Size-selective microzooplankton grazing on the phytoplankton in the Curonian Lagoon (SE Baltic Sea)

Summary Dilution experiments were performed to estimate phytoplankton growth and microzooplankton grazing rates at two sites: freshwater (Nida) and brackish water (Smiltyne) in the Curonian Lagoon (SE Baltic Sea). Using the size-fractionation approach and dilution experiments, we found that the microzooplankton community was able to remove up to 78% of nanophytoplankton (2–20 μm) standing stock and 130% of the total daily primary production in the brackish waters of the lagoon, and up to 83% of standing stock and 76% of the primary production of picophytoplankton (0.2–2 μm) in the freshwater part. The observed differences were attributed to the changes in ciliate community size and trophic structure, with larger nano-filterers (30–60 μm) dominating the brackish water assemblages and pico-nano filterers (

Using ciliates to monitor different aquatic environments in Daya Bay, South China Sea

Spatial patterns of planktonic ciliate communities were studied to monitor marine water quality during winter, spring, summer, and autumn of 2014 in Daya Bay, South China Sea. A total of 41 species, with eight dominant species, were identified. Multivariate and univariate analyses demonstrated that spatial taxonomic pattern of planktonic ciliate communities was significantly correlated with environmental condition; ciliate abundance, species diversity, and species richness were significantly correlated with NO3– and salinity or temperature. Additionally, two dominant species (Tintinnopsis minuta Wailes, 1925 and Tintinnopsis beroidea Stein, 1867) were significantly positively correlated with nutrients, particularly with nitrogen nutrients. Three dominant species (Strombidium conicum (Lohmann, 1908) Wulff, 1919; Spirotontonia turbinata (Song &amp; Bradbury, 1998) Agatha, 2004; Laboea strobila Lohmann, 1908) showed more sensitivity to salinity, whereas Mesodinium rubrum (Lohmann, 1908) was significantly correlated with temperature. Our findings suggest that planktonic ciliate communities can be considered a favorable bioindicator of marine water quality.

Spatiotemporal variation in community structure of marine benthic ciliates in the Yellow Sea during and after macroalgal and giant jellyfish blooms

The annual bloom of the green macroalgal Ulva prolifera from May through July since 2008 and another of giant jellyfish Nemopilema nomurai from June through September have been frequent events in the Yellow Sea. However, the patterns of benthic ciliate communities during and after the blooms are still not known. In combination with analyses of benthic environmental factors, we investigated the distribution and community composition of benthic ciliates in the Yellow Sea in July and November 2011. In July, ciliates had high standing crops and diversity in the northern Yellow Sea, and in the inshore area off the southern Shandong Peninsula, where large numbers of green macroalgae accumulated. In November, the abundance, biomass and diversity of ciliates were high in the sea areas off the Shandong Peninsula and Changjiang estuary, where a large quantity of jellyfish occurred in August. Neither the abundance nor the biomass had significant difference between seasons, or between different compartments of the Yellow Sea. The species number, and both Margalef and Shannon-Wiener indices of ciliates were all significantly higher in November than in July. In both seasons, prostomateans and karyorelicteans consistently constituted the first and second most important ciliate groups in biomass; and carnivorous ciliates constituted the primary feeding type in terms of biomass as well as species richness, followed by bacterivores, algivores and omnivores. Compared with that in June 2007 when no macroalgae occurred, the percentage of small-sized bacterivores (e.g. Metacystis spp., Euplotes spp. and scuticociliates) increased in July 2011. The proportion of carnivorous ciliates increased in November, and this increased dominance of carnivorous ciliates may be a response to the increase in predominance of heterotrophic nanoflagellates, which might in turn be ascribed to an effect of green macroalgal and giant jellyfish blooms in the Yellow Sea.