Communities In Mangrove Sediments Research Articles

Archaeal communities in natural and artificially restored mangrove sediments in Tieshan Bay, China

Mangrove forests are crucial wetland ecosystems located in tropical and subtropical intertidal zones, but they have become extensively degraded. As a viable ecological restoration strategy, the cultivation of native mangrove vegetation in these degraded areas has gained considerable attention. Mangroves’ unique environmental conditions make them suitable habitats for diverse microbial communities, including Archaea - one of the main microbial communities in mangrove sediments - which plays a pivotal role in biogeochemical cycles. However, little is known about the dynamics of archaeal communities during mangrove restoration through phytoremediation. In this study, we investigated the physicochemical properties of sediment profiles from natural and artificially restored mangrove ecosystems in Tieshan Bay. We utilized quantitative polymerase chain reaction (qPCR) and 16S rRNA gene sequencing techniques to explore differences in abundance, community structure, and composition of archaeal communities between sediment profiles in natural and artificially restored mangrove ecosystems. We also examined correlations between archaeal communities and environmental factors. Our results revealed that Crenarchaeota, Thermoplasmatota, Asgardarchaeota, Nanoarchaeota, and Euryarchaeota were the predominant archaeal phyla, with significant variation in sediment composition observed for Crenarchaeota and Thermoplasmatota in different depths. We also found significant differences in archaeal abundance and community composition between natural and restored mangrove sediments. Furthermore, C/N ratio and pH emerged as primary drivers of archaeal communities in wet and dry season sediments, respectively. Additionally, the study revealed seasonal disparities in seasonal differences in the relative abundance of certain archaeal groups (such as Asgardarchaeota, Nanoarchaeota). Network analysis demonstrated stronger interconnections among archaeal communities in sediments from natural mangroves than from artificially restored ones. These findings enhance our knowledge of archaeal community succession patterns in mangrove restoration, as well as provide fresh perspectives for the sustainable management of mangrove ecosystems.

Effects of polypropylene films and leached dissolved organic matters on bacterial community structure in mangrove sediments

Over the past decades, the accumulation of plastics in mangrove ecosystems has emerged as a significant environmental concern, primarily due to anthropogenic activities. Polypropylene (PP) films, one of the plastic types with the highest detection rate, tend to undergo intricate aging processes in mangrove ecosystems, leading to the release of dissolved organic matter (DOM) that may further influence the local bacterial communities. Yet, the specific effects of new and weathered (aged) plastic films and the associated leached DOM on bacterial consortia in mangrove sediments remain poorly understood. In this study, an incubation experiment was conducted to elucidate the immediate effects and mechanisms of the new and relatively short-term (45 or 90 days) aged PP films, as well as their leached DOM (PDOM), on characteristics of DOM and the bacterial community structure in mangrove sediments under different tidal conditions. Surface morphology and functional group analyses showed that both new and aged PP films exhibited comparable degradation profiles under different tidal conditions over the incubation period. As compared to the new PP film treatments, the introduction of the short-term aged PP films significantly affected the content of humic-like compounds in sediments, and such effects were partially ascribed to the release of PDOM during the incubation. Although the addition of PP films and PDOM showed minor effects on the overall diversity and composition of bacterial communities in the sediments, the abundance of some dominant phyla exhibited a growth or reduction tendency, possibly changing their ecological functions. This study was an effective attempt to investigate the relationship among plastic surface characteristics, sedimentary physicochemical properties, and bacterial communities in mangrove sediments. It revealed the ecological ramifications of new and short-term plastic pollution and its leachates in mangrove seedtimes, enhancing our understating of their potential impacts on the health of mangrove ecosystems.

Analyzing The Metagenomics of Bacterial Diversity in The Backwater Mangrove Regions of Pichavaram and Parangipettai, Tamil Nadu, India, Reveals Insights into Sediment Microbial Communities

This metagenomic study delves into the microbial diversity and functional potential of sediment samples from the Pichavaram and Parangipettai mangrove ecosystems. The dataset, initially comprising millions of base pairs and sequences, undergoes meticulous quality control, revealing refined characteristics post-artificial duplicate read identification. Taxonomic analyses unveil a rich microbial landscape, dominated by bacteria, with intriguing presence of Eukaryota, Archaea, and unclassified sequences. The intricate community structures, highlighted through phylogenetic distributions, showcase the diversity and unexpected taxa, providing a nuanced understanding of microbial dynamics. Functional gene exploration uncovers key enzymes driving biosynthesis of secondary metabolites and metabolic pathways, shedding light on the microbial community's ecological roles and biotechnological potential. This comprehensive metagenomic analysis serves as a foundation for further ecological assessments, taxonomic refinements, and investigations into the adaptive strategies of these microbial communities in mangrove sediments.

Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

BackgroundMangrove wetlands are coastal ecosystems with important ecological features and provide habitats for diverse microorganisms with key roles in nutrient and biogeochemical cycling. However, the overall metabolic potentials and ecological roles of microbial community in mangrove sediment are remained unanswered. In current study, the microbial and metabolic profiles of prokaryotic and fungal communities in mangrove sediments were investigated using metagenomic analysis based on PacBio single-molecule real time (SMRT) and Illumina sequencing techniques.ResultsComparing to Illumina short reads, the incorporation of PacBio long reads significantly contributed to more contiguous assemblies, yielded more than doubled high-quality metagenome-assembled genomes (MAGs), and improved the novelty of the MAGs. Further metabolic reconstruction for recovered MAGs showed that prokaryotes potentially played an essential role in carbon cycling in mangrove sediment, displaying versatile metabolic potential for degrading organic carbons, fermentation, autotrophy, and carbon fixation. Mangrove fungi also functioned as a player in carbon cycling, potentially involved in the degradation of various carbohydrate and peptide substrates. Notably, a new candidate bacterial phylum named as Candidatus Cosmopoliota with a ubiquitous distribution is proposed. Genomic analysis revealed that this new phylum is capable of utilizing various types of organic substrates, anaerobic fermentation, and carbon fixation with the Wood-Ljungdahl (WL) pathway and the reverse tricarboxylic acid (rTCA) cycle.ConclusionsThe study not only highlights the advantages of HiSeq-PacBio Hybrid assembly for a more complete profiling of environmental microbiomes but also expands our understanding of the microbial diversity and potential roles of distinct microbial groups in biogeochemical cycling in mangrove sediment.-S53N_3zEPEL_LmTMdKdCcVideo

Effect of Cu addition on sedimentary bacterial community structure and heavy metal resistance gene abundance in mangrove wetlands

IntroductionMangroves are a unique ecosystem, but are often affected by heavy metal pollution. Bacterial communities in mangrove sediments usually respond to heavy-metal pollution stress by expressing specific heavy-metal resistance genes (HMRGs).MethodsMultivariate statistics were performed on Metagenomics as well as environmental data to evaluated the effects of Cu addition on the sedimentary bacterial community structure.Results and discussionUsing metagenomics technology, we found that the Shannon andChao1 indices of natural sediments were significantly higher than in sediments with artificially added Cu. Addition of Cu significantly altered bacterial community structure and diversity at the phylum, class and order levels in sediments. The relative abundance of HMRGs in Cuadded sediments was lower than that in natural sediments. Environmental factors that affect bacterial communities also affect HMRGs. However, the contribution of heavy-metal pollution to the change in HMRG abundance was much lower than its contribution to the change in the bacterial community, indicating that the relationship between HMRG abundance and heavy-metal pollution is complex and needs to be comprehensively studied.

Role of crab holobionts in benthic N cycling in mangroves with different trophic status

Microbial dinitrogen (N2) fixation and intense bioturbation by macrofauna can contribute to reduce nitrogen (N) limitation in mangrove systems. In particular, crabs are important ecosystem engineers that rework sediments, redistribute organic matter, accelerate nutrient cycling and shape microbial communities in mangrove sediments. Hosting functionally diverse microbial communities, crabs form a discrete ecological unit (a holobiont). In this study, we report rates of respiration, inorganic N fluxes, net N2 fixation, denitrification and dissimilatory nitrate reduction to ammonium (DNRA) measured in the fiddler crab Leptuca thayeri and sesarmid crab Armases rubripes holobionts, which are dominant in oligotrophic and eutrophic mangrove systems of southeast Brazil, respectively. We measured lower biomass-specific rates of respiration and ammonium (NH4+) production for the larger L. thayeri compared to A. rubripes, with very different molar ratios of O2 respiration to NH4+ production (152:1 vs. 20:1, respectively). This suggests a size-metabolism relationship, different food quality or different coupling of N excretion and assimilation by the crab holobionts in the 2 systems. Both crab holobionts contributed to net denitrification and DNRA, with faster N cycling in A. rubripes in the eutrophic system. Net N2 fixation was also detected, with nearly 4-fold higher rates in A. rubripes compared to L. thayeri. Overall, our results illustrate active and complex N cycling associated with the 2 dominant crab holobionts and highlight their potential and overlooked role as important conduits of fixed N, which may double N2 fixation rates in the mangrove’s rhizosphere.

Response of bacterial diversity and community structure to metals in mangrove sediments from South China

Human activities have given rise to metal contamination in the constituents of mangrove ecosystems, posing a critical threat to sediment microorganisms; hence, it is of great importance to comprehend the effects of metals on the microbial communities in mangrove sediments. This study was the first to explore the response of the bacterial diversity and community structure to nine metals (As, Co, Cr, Cu, Mn, Ni, Pb, V and Zn) and organic matter fractions (including total organic carbon (TOC), total nitrogen (TN), and total sulfur (TS)) in mangrove wetlands from Zhanjiang, China, using 16S rRNA high-throughput sequencing technology and Spearman correlation analysis. The results showed that these nine metals were scattered differently in different mangrove sediments, and the metals and organic matter fractions jointly affected the bacterial communities in the sediments. Several metals displayed significant positive correlations with the abundances of the phylum Bacteroidetes and the genera Actibacter and Sphingobacterium but significant negative correlations with the abundances of two genera Holophaga and Caldithrix. Furthermore, the abundances of the phylum Actinobacteria and many bacterial genera showed significant positive or negative responses to the levels of the three organic matter fractions. Interestingly, the levels of a number of bacterial genera that exhibited increased abundance with high levels of metals and TS might be reduced with high TOC and TN, and vice versa: the levels of genera that exhibited decreased abundance with high levels of metals and TS might be increased with high TOC and TN. Overall, many bacterial groups showed different response patterns to each metal or organic matter fraction, and these metals together with organic matter fractions influenced the bacterial diversity and community structure in mangrove sediments.

Particle size shapes the prokaryotic microbial communities in mangrove sediments: A case study of Sanya, China

Particle size shapes the prokaryotic microbial communities in mangrove sediments: A case study of Sanya, China

Introduction of exotic species Sonneratia apetala alters diazotrophic community and stimulates nitrogen fixation in mangrove sediments

Mangrove restoration by exotic mangrove species Sonneratia apetala has been practiced as a strategy to reconstruct mangrove wetlands. Diazotrophs in mangrove sediment are nitrogen suppliers for mangrove ecosystems. However, the response of sediment diazotrophs, especially their nitrogen fixation rates, to the introduction of exotic S. apetala remains unclear. In the present study, we compared the variations in sediment physicochemical properties, N2 fixation rate, and the composition of total bacterial and diazotrophic communities in mangrove sediments between exotic species (S. apetala) and three native species (i.e., Aegiceras corniculatum, Lumnitzera racemosa, and Rhizophora apiculata). Our results indicated that the introduction of exotic S. apetala significantly (P < 0.05) increased nutrient levels (including TC, TN, and TS) and improved the N2 fixation rate in sediments. Though S. apetala introduction had not caused significant changes in bacterial and diazotrophic alpha diversity, their community structure and composition were altered. The dominant diazotrophic groups were sulfur-oxidizing (SOB) and sulfate-reducing (SRB) bacteria. The relative abundance of Chromatiaceae (affiliated with SOB) significantly increased (P < 0.05), while the relative abundance of Desulfuromonadaceae (affiliated with SRB) decreased in S. apetala sediments. In addition, several SOB and SRB groups were identified as putative keystone taxa by network analysis, suggesting that SOB/SRB groups potentially played a central role in the biogeochemical cycles involving nitrogen (N) and sulfur (S) of the mangrove ecosystem. Redundancy analysis revealed that C/N and NH4+-N were the key factors (P < 0.05) driving sediment diazotrophic communities. This study provides new insights into the ecological impact of exotic S. apetala introduction, which has important implications for the sustainable management and restoration of mangrove ecosystems.

The importance of conditionally rare taxa for the assembly and interaction of fungal communities in mangrove sediments

The fungal communities provide the nutrients and drive the cycles of elements in nature, and the rare fungal taxa are proved to be crucial for these communities in many environments. However, the ecological functions of rare taxa for the fungal communities in mangrove ecosystems are poorly assessed until now. This work aims to reveal the importance of rare taxa for the assembly of fungal communities in mangrove sediments by using the amplicon sequencing analysis of different spatiotemporal samples collected from Sanya mangroves, China. The results showed that Ascomycota and Basidiomycota were the dominant phyla in the conditionally rare taxa (CRT). The fungal communities possessed outstanding stability against the spatiotemporal variation and most collected environmental factors. The CRT possessed narrower niches and were more affected by the environmental variables than the abundant taxa. The current work demonstrated that the CRT had significantly higher relative abundances, degrees (the number of adjacent edges), clustering coefficients, and closeness centralities in the top 8 modules of the co-occurrence network (p < 0.05), indicating the important role of the CRT for the interaction of fungal communities in mangrove sediments. These findings indicate the importance of the CRT for the fungal community structures in mangrove sediments, and would deepen our understanding of dynamic functions of mangrove fungi, thereby facilitating the management, utilization, and protection of mangrove ecosystems. KEY POINTS: • Fungal communities in mangrove sediments are stable against environment variations. • The conditionally rare taxa (CRT) possessed narrower niches than the abundant fungal taxa. • The CRT are central for the co-occurrence network and interaction of fungal communities.

Seasonal variability in environmental parameters influence bacterial communities in mangrove sediments along an estuarine gradient

Mangrove ecosystems are repositories of divergent microbial communities which respond differently to environmental characteristics. Hence, it is important to understand the community structure with respect to pertinent controlling environmental factors. Seasonal down-core variations in bacterial communities were investigated at 3 mangrove sites at upstream, mid-stream and mouth region along the economically-important Mandovi estuary, west coast of India. Genomic DNA extracted from 45 sediment samples were analyzed by 454 pyrosequencing. A total of 15008 operational taxonomic units (OTUs) were assigned to 54 phyla and 127 classes re-affirming mangroves to be biodiversity hotspots. Members of class Alphaproteobacteria constituted up to 35% of the tag sequences and showed marked seasonal variability at all locations (Kruskal-Wallis test, p < 0.05). Occurrence of other abundant phyla like Bacteroidetes, Firmicutes, Actinobacteria, Chloroflexi and Acidobacteria at the study sites indicated their participation in biogeochemical cycling. Seasonal fluctuations in the environmental variables influenced the bacterial communities. Statistical analysis revealed that during the monsoon, bacterial communities proximal to the mouth region were largely influenced by pore water NH4+ concentrations due to its accumulation in the sub-surface sediments. At the upstream site, elevated organic carbon and NO2− content during the post-monsoon caused variations in the bacterial community.

Depth-dependent variability of biological nitrogen fixation and diazotrophic communities in mangrove sediments

BackgroundNitrogen-fixing prokaryotes (diazotrophs) contribute substantially to nitrogen input in mangrove sediments, and their structure and nitrogen fixation rate (NFR) are significantly controlled by environmental conditions. Despite the well-known studies on diazotrophs in surficial sediments, the diversity, structure, and ecological functions of diazotrophic communities along environmental gradients of mangrove sediment across different depths are largely unknown. Here, we investigated how biological nitrogen fixation varied with the depth of mangrove sediments from the perspectives of both NFR and diazotrophic communities.ResultsThrough acetylene reduction assay, nifH gene amplicon and metagenomic sequencing, we found that the NFR increased but the diversity of diazotrophic communities decreased with the depth of mangrove sediments. The structure of diazotrophic communities at different depths was largely driven by salinity and exhibited a clear divergence at the partitioning depth of 50 cm. Among diazotrophic genera correlated with NFR, Agrobacterium and Azotobacter were specifically enriched at 50–100 cm sediments, while Anaeromyxobacter, Rubrivivax, Methylocystis, Dickeya, and Methylomonas were more abundant at 0–50 cm. Consistent with the higher NFR, metagenomic analysis demonstrated the elevated abundance of nitrogen fixation genes (nifH/D/K) in deep sediments, where nitrification genes (amoA/B/C) and denitrification genes (nirK and norB) became less abundant. Three metagenome-assembled genomes (MAGs) of diazotrophs from deep mangrove sediments indicated their facultatively anaerobic and mixotrophic lifestyles as they contained genes for low-oxygen-dependent metabolism, hydrogenotrophic respiration, carbon fixation, and pyruvate fermentation.ConclusionsThis study demonstrates the depth-dependent variability of biological nitrogen fixation in terms of NFR and diazotrophic communities, which to a certain extent relieves the degree of nitrogen limitation in deep mangrove sediments.BxKuS27-gQH4xs4TJqgBb7Video

Effects of heavy metals and organic matter fractions on the fungal communities in mangrove sediments from Techeng Isle, South China

Heavy metal pollution has become a serious environmental problem in mangrove ecosystems and has attracted more attention. Most of previous studies have mainly focused on the effects of heavy metals on bacterial communities in mangrove sediments. This study was the first to investigate the effects of heavy metals (e.g., As, Co, Cr, Cu, Mn, Ni, Pb, V and Zn) and organic matter fractions (including total organic carbon (TOC), total nitrogen (TN), and total sulfur (TS)) on the fungal communities in mangrove sediments from Techeng Isle, South China. The results of this study indicated that the average contents of Mn, Pb and V of 8.30–161.80 μg/g presented relatively higher pollution levels, while the concentrations of Zn, Cr, Cu and Ni of 0.80–21.93 μg/g were lower than those recorded in other mangrove ecosystems. Furthermore, the sediment fungal community structures responded differently to the nine heavy metals and three organic matter fractions. Heavy metals Cr, Pb and V displayed significant positive correlations with Eutypella (P < 0.05), whereas significant negative correlations with Cystobasidium, Lulworthia, Cladosporium, Lulwoana and Cephalotheca (P < 0.05). In addition, the effects of heavy metals and TS on many fungal genera were opposite to those of TOC and TN. Fungal genera that decreased with high TOC and TN contents may be increased with high heavy metal contents and TS, and vice versa, and the genera that increased with high TOC and TN contents may be decreased with high heavy metals and TS. Our results suggested that many heavy metals, such as Cr, Pb and V, were sensitive to several fungal genera in mangrove sediments, and heavy metals together with organic matter fractions may participate and shape the fungal communities in mangrove sediments.

Biogeography, Assembly Patterns, Driving Factors, and Interactions of Archaeal Community in Mangrove Sediments.

ABSTRACTArchaea are a major part of Earth’s life. They are believed to play important roles in nutrient biogeochemical cycling in the mangrove. However, only a few studies on the archaeal community in mangroves have been reported. In particular, the assembly processes and interaction patterns that impact the archaeal communities in mangroves have not been investigated to date. Here, the biogeography, assembly patterns, and driving factors of archaeal communities in seven representative mangroves across southeastern China were systematically analyzed. The analysis revealed that the archaeal community is more diverse in surface sediments than in subsurface sediments, and more diverse in mangroves at low latitudes than at high latitudes, with Woesearchaeota and Bathyarchaeota as the most diverse and most abundant phyla, respectively. Beta nearest-taxon index analysis suggested a determinant role of homogeneous selection on the overall archaeon community in all mangroves and in each individual mangrove. In addition, the conditionally rare taxon community was strongly shaped by homogeneous selection, while stochastic processes shaped the dominant taxon and always-rare taxon communities. Further, a moderate effect of environmental selection on the archaeal community was noted, with the smallest effect on the always-rare taxon community. Mangrove location, mean annual temperature, and salinity were the major factors that greatly affected the community composition. Finally, network analysis revealed comprehensive cooccurrence relationships in the archaeal community, with a crucial role of Bathyarchaeota. This study expands the understanding of the biogeography, assembly patterns, driving factors, and cooccurrence relationships of the mangrove archaeal community and inspires functional exploration of archaeal resources in mangrove sediments.IMPORTANCE As a key microbial community component with important ecological roles, archaea merit the attention of biologists and ecologists. The mechanisms controlling microbial community diversity, composition, and biogeography are central to microbial ecology but poorly understood. Mangroves are located at the land-ocean interface and are an ideal environment for examining the above questions. We here provided the first-ever overview of archaeal community structure and biogeography in mangroves located along an over-9,000-km coastline of southeastern China. We observed that archaeal diversity in low-latitude mangroves was higher than that in high-latitude mangroves. Furthermore, our data indicated that homogeneous selection strongly controlled the assembly of the overall and conditionally rare taxon communities in mangrove sediments, while the dominant taxon and always-rare taxon communities were mainly controlled by dispersal limitation.

Denitrifier communities differ in mangrove wetlands across China

To explore the geographical variations in the nosZ-denitrifier community and the underlying influential factors, surface sediments were collected from six mangroves across China, including Yunxiao (YX), Futian (FT), Fangchenggang (FCG), Zhanjiang (ZJ), Dongzhaigang (DZG), and Dongfang (DF). The nosZ gene abundance in mangrove sediments were 1.60 × 105–1.17 × 106 copies g−1 dry sediment, with a higher density in Avicennia marina forest than the mudflat. Denitrifier community richness and diversity increased with decreasing latitude based on the Chao1 richness and Shannon diversity index, with the highest diversity being observed in the DF mangrove. The denitrifier communities could be classified into three groups including south DF mangrove, middle FCG, ZJ and DZG mangroves, and north YX and FT mangroves based on HCA and PCoA analysis. The nosZ OTUs could be divided into seven distinct clusters with different proportionality characteristics among mangroves. Environmental factors (TN, TOC, and salinity) collectively shape denitrifier communities in mangrove sediments.

Tracking Mangrove Oil Bioremediation Approaches and Bacterial Diversity at Different Depths in an in situ Mesocosms System.

In this study, oil spills were simulated in field-based mangrove mesocosms to compare the efficiency of bioremediation strategies and to characterize the presence of the alkB, ndo, assA, and bssA genes and the ecological structures of microbial communities in mangrove sediments at two different depths, (D1) 1–10 cm and (D2) 25–35 cm. The results indicated that the hydrocarbon degradation efficiency was higher in superficial sediment layers, although no differences in the hydrocarbon degradation rates or in the abundances of the alkB and ndo genes were detected among the tested bioremediation strategies at this depth. Samples from the deeper layer exhibited higher abundances of the analyzed genes, except for assA and bssA, which were not detected in our samples. For all of the treatments and depths, the most abundant phyla were Proteobacteria, Firmicutes and Bacteroidetes, with Gammaproteobacteria, Flavobacteriales and Clostridiales being the most common classes. The indicator species analysis (ISA) results showed strong distinctions among microbial taxa in response to different treatments and in the two collection depths. Our results indicated a high efficiency of the monitored natural attenuation (MNA) for oil consumption in the tested mangrove sediments, revealing the potential of this strategy for environmental decontamination and suggesting that environmental and ecological factors may select for specific bacterial populations in distinct niches.

High-throughput sequencing and analysis of microbial communities in the mangrove swamps along the coast of Beibu Gulf in Guangxi, China

Mangrove swamp is one of the world’s richest and most productive marine ecosystems. This ecosystem also has a great ecological importance, but is highly susceptible to anthropogenic disturbances. The balance of mangrove ecosystem depends largely on the microbial communities in mangrove sediments. Thus, understanding how the mangrove microbial communities respond to spatial differences is essential for more accurate assessment of mangrove ecosystem health. To this end, we performed the first medium-distance (150 km) research on the biogeographic distribution of mangrove microbial communities. The hypervariable regions of 16S rRNA gene was sequenced by Illumina to compare the microbial communities in mangrove sediments collected from six locations (i.e. Zhenzhu harbor, Yuzhouping, Maowei Sea, Qinzhou harbor, Beihai city and Shankou) along the coastline of Beibu Gulf in Guangxi province, China. Collectively, Proteobacteria, Bacteroidetes, Chloroflexi, Actinobacteria, Parvarchaeota, Acidobacteria and Cyanobacteria were the predominant phyla in the mangrove sediments of this area. At genus level, the heat map of microbial communities reflected similarities between study sites and was in agreement with their biogeographic characteristics. Interestingly, the genera Desulfococcus, Arcobacter, Nitrosopumilus and Sulfurimonas showed differences in abundance between study sites. Furthermore, the principal component analysis (PCA) and unweighted UniFrac cluster tree of beta diversity were used to study the biogeographic diversity of the microbial communities. Relatively broader variation of microbial communities was found in Beihai city and Qinzhou harbour, suggesting that environmental condition and historical events may play an important role in shaping the bacterial communities as well. This is the first report on medium-distance range distribution of bacteria in the mangrove swamp ecosystem. Our data is valuable for monitoring and evaluation of the impact of human activity on mangrove habitats from the perspective of microbiome.

Depth-related change of sulfate-reducing bacteria community in mangrove sediments: The influence of heavy metal contamination

This study provides new insight towards the effects of heavy metal contamination on sulfate-reducing bacteria (SRB) in mangrove ecosystem. We investigated SRB communities in mangrove sediments (0–30 cm depth) from Futian, Xixiang and Shajing mangrove wetlands in Shenzhen, China, with different heavy metal contamination levels. The results showed that SRB community abundance (1.71 × 107–3.04 × 108 dsrB gene copies g−1 wet weight sediment) was depth-related and significantly correlated with Cd and Ni concentrations. The α-diversity indices of SRB community (Chao1 = 21.25–84.50, Shannon = 2.31–2.96) were significantly correlated with Cd level in mangrove sediments. Desulfobacteraceae, Desulfobulbaceae and Syntrophobacteraceae acted as major SRB groups in mangrove sediments, and Syntrophobacteraceae was most sensitive to metal contamination. UniFrace clustering analysis revealed that SRB community structure was influenced by the heavy metal concentrations. Moreover, redundancy analysis indicated that Cd and total phosphorus were the major environmental factors affecting the SRB structure in mangrove sediments.

Effects of endocrine disrupting chemicals (EDCs) on bacterial communities in mangrove sediments

The diversity and composition of bacterial communities in mudflat and mangrove sediments were investigated under the stresses of endocrine-disrupting chemicals (EDCs) using high-throughput sequencing technique. Bacterial diversity in the original sediments was highest among all samples, followed by non-sterilized and sterilized sediments after 84-day incubation. Proteobacteria were the predominant phylum in both mangrove and mudflat sediments, which accounted for 40–60% of the total tags, followed by Cyanobacteria, Chloroflexi, Planctomycetes and Acidobacteria. Although the total population of bacteria was not significantly declined due to the addition of EDCs, bacterial community structures were considerably altered. The number of bacterial genera promoted or inhibited by EDCs was 288 and 324, respectively. Bacterial genera affected by EDCs varied greatly with the types of sediments and the initial status of bacterial communities. Overall, our results suggested that bacterial community structure in mangrove sediments were closely related to their re-development and responses to EDC contamination.

Partial Purification and Characterisation of Sulphur Oxidase from Micrococcus sp. and Klebsiella sp. Isolated from Mangrove Soils of Mahanadi River Delta, Odisha, India

As knowledge of sulphur oxidising bacterial communities in mangrove sediments is very sparse and sulphur oxidizers have wide application such as in treatment of wastewater containing high sulphate levels which causes unwanted H 2 S production by sulfate reducing bacteria (SRB), oxidation of elemental sulphur to plant available sulphate for plant growth promotion, bio leaching, biocontroling agent etc. Hence, in the present study an attempt has been made to explore the diversity of sulphur oxidizing bacteria from mangroves of Mahanadi delta, Odisha to evaluate their biotechnological potential. Two sulphur oxidising bacteria (SOB-7and SOB-8) were isolated from mangrove soils of Mahanadi river delta, based on the change of colour of the thiosulphate broth medium from purple to colour less by reducing the pH. Based on morphological, biochemical and 16S rRNA gene sequencing the two strains (SOB-7) and (SOB-8) were identified as Klebsiella sp., and Micrococcus sp. respectively. The gene bank accession number of the strains are KR632644 (SOB-7) and KR632643 (SOB-8). The strain Klebsiella sp. and Micrococcus sp showed sulphate ion production ability of 243 mg/ml and 240 mg/ml respectively with decrease in pH from 7.0 to 4.0. Among these two isolates, SOB-8 showed higher sulphide oxidase production ability (126.83 U/ml) than the isolate, SOB-7 (126.0 U/ml). Maximum sulphide oxidase by both the strains were obtained at temperature 45℃, peptone as nitrogen source, thiosulphate concentration of 10 mg/ml. pH 9.0 for the isolate SOB-8 whereas pH 7.0 for the isolate, SOB-7. Partially purified enzyme of both the isolate showed higher activity at same substrate concentration of 1.5mg/ml, but varies with pH and temperature.