Collection Of Landraces Research Articles

Phenotypic variation in root architecture traits and their relationship with eco-geographical and agronomic features in a core collection of tetraploid wheat landraces (Triticum turgidum L.)

To obtain varieties with root systems adapted to marginal environments it is necessary to search for new genotypes in genetically diverse materials, such as landraces that are more likely to carry novel alleles for different root features. A core collection of ‘durum’ wheat, including three subspecies (dicoccon, turgidum and durum) from contrasting eco-geographical zones, was evaluated for root traits and shoot weight at the seminal root stage. Distinctive rooting phenotypes were characterized within each subspecies, mainly in subsp. durum. Contrasting rooting types, including large roots with shallow distributions, and others with high root numbers were identified. Correlations with climatic traits showed that root shape is more relevant in adaptation to eco-geographical zones in subsp. dicoccon, whereas in subsp. turgidum and durum, which come from warmer and drier areas, both size and shape of roots could have adaptive roles. Root traits with the largest positive effects on certain yield components under limited water conditions included root diameter in subsp. dicoccon, root size in turgidum, and root number in durum. Additionally, shoot weight at the seedling stage had important effects in subsp. turgidum and durum. Twenty-eight marker–trait associations (MTAs) previously identified in this collection for agronomic or quality traits were associated with seminal root traits. Some markers were associated with only one root trait, but others were associated with up to six traits. These MTAs and the genetic variability characterized for root traits in this collection can be exploited in further work to improve drought tolerance and resource capture in wheat.

Identification of new sources of resistance for pearl millet downy mildew disease under field conditions

AbstractPearl millet is an important cereal crop for smallholder farmers’ food security in Africa and India. However, its production has stagnated due to several factors such as downy mildew (DM). Thus, a study was conducted to identify new sources of resistance from pearl millet inbred lines derived from a collection of landraces originated from West and Central African countries. A set of 101 lines, including 99 inbred lines from West and Central Africa along with a 7042S and SOSAT C 88 as susceptible and resistant checks, respectively, were evaluated under field conditions with infector rows in Bambey and Nioro research stations during the rainy season of 2016. Data on DM incidence and severity, plant height, flowering time, panicle length and productive tillers were recorded. The results showed highly significant differences among lines for all observed traits. Among the tested lines, 55 including SOSAT C 88 were resistant, 16 moderately resistant and 30 including 7042S were susceptible to the disease. Out of the 55 resistant lines, 20 were disease free. Hierarchical ascendant cluster analysis grouped the lines into three clusters with the DM parameters and plant height as the most discriminant factors. Cluster II contains the susceptible lines, while cluster III comprises the moderately resistant lines. The lines which belongs to cluster I were characterized by their resistance to the disease. Further use of these available new sources of resistance will be very useful for improvement of pearl millet for DM resistance and other agronomic traits.

STUDIES ON SOME QUALITY COMPONENTS IN A LANDRACE COLLECTION OF CLIMBING BEANS (PHASEOLUS VULGARIS VAR. COMMUNIS)

The study aimed at evaluating a landraces collection of climbing beans regarding some characters that contribute to quality of grains or green pods. The biological material was formed of 56 landraces and 2 varieties of climbing beans from which the grains or green pods can be used in food. The landraces were collected from western and southwestern Romania. The experimentation was performed over three years in a collection-type experience, arranged in three repetitions. As elements of quality we determined: the percentage of husks from beans, boiling coefficient, the percentage of bean total protein, 1000 grain weight, the percentage of sugar in green pods. The experimental data were processed by analysis of variance and applying the t-test for determination of differences from the variety ‘Aurie de Bacau’ used as a control. The collection includes precious populations for all studied characters, but their number is reduced. For the percentage of grain husks and the protein content of grain, the most populations are below the control variety. For sugar percentage in green pod and the coefficient of boiling, the landraces are similar to control variety. In the collection, there are populations that can be processed by selection or can be used as parents in hybridization programs.

Evaluation of different Ethiopian common bean, Phaseolus vulgaris (Fabaceae) genotypes for host resistance to the Mexican bean weevil, Zabrotes subfasciatus (Coleoptera: Bruchidae)

AbstractCommon bean (Phaseolus vulgarisL.) is amongst the most important grain legume crops in Africa in general, and Ethiopia in particular. The Mexican been weevil (Zabrotes subfasciatusBoheman) heavily attacks the grain of common bean. A total of 300 common bean entries were subjected to a ‘no-choice’ test at Melkassa Agricultural Research Centre, Ethiopia, using a randomized complete block design with three replications, to evaluate for resistance to the Mexican bean weevil. Data on insect and seed traits were collected and a significant level (P<0.01) of variation in all parameters measured was observed amongst genotypes. Relative resistance was recorded in landraces, improved genotypes and breeding lines, but the resistant genotypes, RAZ-11, RAZ-36, RAZ-2, RAZ-44, RAZ-120, RAZ-40 and MAZ-203, showed consistently complete resistance, with zero index of susceptibility value. Two other promising entries were also identified from the breeding lines (SCR-11) and landrace collections (NC-16) of Ethiopia. Stratified ranking diagrams showed that accessions from different eco-geographical origins in Ethiopia and those with different colours showed different patterns of response to infestation. The Ethiopian bean breeding programme should take up the resistant genotypes for a comprehensive yield trial at the national level and direct release them as commercial varieties. The incorporation of bean weevil resistance genes into adapted varieties through backcross breeding techniques, supported with marker assisted selection, seems to be the best strategy not only in terms of time saving but also in terms of effectiveness and efficiency.

GENOTYPE BY ENVIRONMENT INTERACTION AND GRAIN YIELD STABILITY OF ETHIOPIAN WHITE LUPIN (LUPINUS ALBUS L.) LANDRACES

SUMMARYGenotype by environment interaction is a common phenomenon in crop production and remains an important issue in genotype evaluation and recommendation. However, no detailed multi-environment evaluation of Ethiopian white lupin has been undertaken so far. Thus, this study was undertaken with the objectives to evaluate the performance and stability of white lupin landraces in six locations; and characterize white lupin growing environments in Ethiopia. Twelve white lupin landrace collections of Ethiopia were evaluated across six different locations in Ethiopia during the 2014/15 main growing season using a randomized complete block design with four replications. The genotype main effect plus genotype by environment interaction (GGE) biplots analysis was used to visualize the patterns of the interaction components. The results depicted that the tested landraces had differential performances across locations implying the presence of crossover interaction. The first two principal components (PC1 = 41.6% and PC2 = 21.8%) of the GGE explained 63.4% of the GGE sum of squares. All test locations were found to be representative with different degrees of reliability whereby Finote Selam and Dibate were found to be most representative. In addition, all test locations, except Mandura and Injibara, had generally similar and good discriminating power. Finote Selam and Dibate were found to be the most representative and discriminating environments and are characterized as most desirable test locations for white lupin improvement in northwestern Ethiopia. G2 was found to be the highest yielding and most stable landrace across the test environments, and hence identified as most desirable genotype recommended for production.

Comparison of optimization methods for core subset selection from a large collection of Mexican wheat landraces characterized by SNP markers

AbstractCore subset selection from collections hosted by seed banks, grow in importance as the number of accessions and genetic marker information rapidly increases. A data set of 20,526 single-nucleotide polymorphism (SNP) markers characterizing 7986 Mexican creole wheat landraces, was used to test 11 methods for core subset selection, through optimization criteria containing average genetic distance and genetic diversity. Allele richness was used as an additional criterion to qualify the generated core subsets. Three replications with random samples of 1500 SNP loci, each comprising a maximum of 3000 alleles, were used to perform the method evaluations through four different objective functions. The LR greedy search (LR) and LR with random first pair (LRSemi) were consistently best across all assays for maximizing the objective functions, and they performed well even for criteria not included in those functions. The Tukey's HSD (honest significant difference) multiple comparisons grouped those methods together with the sequential forward selection (SFS) and SFS with random first pair (SFSSemi) strategies as the top set of approaches. All of them are simple heuristic maximization algorithms, and outperformed two more sophisticated optimization approaches: parallel mixed replica exchange and replica exchange Monte Carlo. For their efficiency to optimize the objective functions and computing speed, the LRSemi and SFSSemi methods demonstrated to be good alternatives for core subset selection from large collections of highly homozygous accessions characterized by many biallelic markers.

Characterization and genome-wide association mapping of resistance to leaf rust, stem rust and stripe rust in a geographically diverse collection of spring wheat landraces

The challenge posed by rapidly changing wheat rust pathogens, both in virulence and in environmental adaptation, calls for the development and application of new techniques to accelerate the process of breeding for durable resistance. To expand the resistance gene pool available for germplasm improvement, a panel of 159 landraces plus old cultivars was evaluated for seedling and adult plant resistance (APR) to over 35 Australian pathotypes of Puccinia triticina, Puccinia graminis f. sp. tritici, and Puccinia striiformis f. sp. tritici. Known seedling resistance (SR) genes for leaf rust (Lr2a, Lr3a, Lr13, Lr23, Lr16, and Lr20), stem rust (Sr12, Sr13, Sr23, Sr30, and Sr36), and stripe rust (Yr3, Yr4, Yr5, Yr9, Yr10, Yr17, and Yr27) were postulated. The APR genes identified via field assessments and marker analyses included the pleiotropic genes (Lr34/Yr18/Sr57, Lr46/Yr29/Sr58, Lr67/Yr46/Sr55, and Sr2/Lr27/Yr30), Lr68, Lr74, and uncharacterized APR. A genome-wide association analysis using linear mixed models detected 79 single nucleotide polymorphism (SNP) markers significantly associated with rust resistance, which were mapped on chromosomes 1A, 1B, 1D, 2A, 2B, 3A, 3B, 3D, 4A, 5A, 5B, 6A, 6B, 6D, 7A, 7B and 7D. SNPs associated with multiple rust resistances probably indicate the presence of new pleiotropic or closely linked genes. SNPs were mapped on chromosome positions (1AL, 1DS, 2AL, 4AS, 5BS, 6DL, and 7AL) that have not been known to carry APR genes. This study revealed the presence of a range of possibly unidentified effective seedling and APRs among the landraces, which might represent new sources of rust resistance for the ongoing effort to develop improved wheat cultivars.

High-density genotyping of the A.E. Watkins Collection of hexaploid landraces identifies a large molecular diversity compared to elite bread wheat.

SummaryThe importance of wheat as a food crop makes it a major target for agricultural improvements. As one of the most widely grown cereal grains, together with maize and rice, wheat is the leading provider of calories in the global diet, constituting 29% of global cereal production in 2015. In the last few decades, however, yields have plateaued, suggesting that the green revolution, at least for wheat, might have run its course and that new sources of genetic variation are urgently required. The overall aim of our work was to identify novel variation that may then be used to enable the breeding process. As landraces are a potential source of such diversity, here we have characterized the A.E. Watkins Collection alongside a collection of elite accessions using two complementary high‐density and high‐throughput genotyping platforms. While our results show the importance of using the appropriate SNP collection to compare diverse accessions, they also show that the Watkins Collection contains a substantial amount of novel genetic diversity which has either not been captured in current breeding programmes or which has been lost through previous selection pressures. As a consequence of our analysis, we have identified a number of accessions which carry an array of novel alleles along with a number of interesting chromosome rearrangements which confirm the variable nature of the wheat genome.

Genomic and phenotypic analysis of Vavilov\u2019s historic landraces reveals the impact of environment and genomic islands of agronomic traits

The Vavilov Institute of Plant Genetic Resources (VIR), in St. Petersburg, Russia, houses a unique genebank, with historical collections of landraces. When they were collected, the geographical distribution and genetic diversity of most crops closely reflected their historical patterns of cultivation established over the preceding millennia. We employed a combination of genomics, computational biology and phenotyping to characterize VIR’s 147 chickpea accessions from Turkey and Ethiopia, representing chickpea’s center of origin and a major location of secondary diversity. Genotyping by sequencing identified 14,059 segregating polymorphisms and genome-wide association studies revealed 28 GWAS hits in potential candidate genes likely to affect traits of agricultural importance. The proportion of polymorphisms shared among accessions is a strong predictor of phenotypic resemblance, and of environmental similarity between historical sampling sites. We found that 20 out of 28 polymorphisms, associated with multiple traits, including days to maturity, plant phenology, and yield-related traits such as pod number, localized to chromosome 4. We hypothesize that selection and introgression via inadvertent hybridization between more and less advanced morphotypes might have resulted in agricultural improvement genes being aggregated to genomic ‘agro islands’, and in genotype-to-phenotype relationships resembling widespread pleiotropy.

Linseed (Linum usitatissimum L.) genetic resources for climate change intervention and its future breeding

Linseed or flax (Linum usitatissimum L.), a multiple purpose crop valued for its seed oil, fibre, probiotic and nutraceutical properties, is adapted to different environments and agro-ecologies. Modern breeding techniques using only limited number of selected varieties have resulted in a loss of specific alleles and thus, reduction in total genetic diversity relevant to climate-smart agriculture. However, well-curated collections of landraces, wild linseed accessions and other Linum species exist in the gene banks and are important sources of new alleles. This review is primarily focused on the studies of genetic diversity of linseed species and evaluation related to tolerance to abiotic and biotic stress factors that could be useful for improving linseed through future promising breeding programs in addition to briefly discussing different morphotypes and nutraceutical importance. Wide diversity in linseed germplasm indicates a considerable potential for improving this crop for both agronomic and quality traits required for developing climate-resilience tailored to specific environments. Recent release of the flax genome sequence coupled with wide range of genomic and analytical tools in public domain has furthered understanding of molecular mechanisms for detailed study of the genes underlying flax adaptation to stress and diversity in commercially important accessions. Important climate related traits and their constituent genes are presented and key developments for the future highlighted emphasizing the urgent need to increase the use of genetically diverse germplasm to meet the emerging challenges in agricultural production and to conserve valuable genetic resources for the future.

The development and use of a molecular model for soybean maturity groups

BackgroundAchieving appropriate maturity in a target environment is essential to maximizing crop yield potential. In soybean [Glycine max (L.) Merr.], the time to maturity is largely dependent on developmental response to dark periods. Once the critical photoperiod is reached, flowering is initiated and reproductive development proceeds. Therefore, soybean adaptation has been attributed to genetic changes and natural or artificial selection to optimize plant development in specific, narrow latitudinal ranges. In North America, these regions have been classified into twelve maturity groups (MG), with lower MG being shorter season than higher MG. Growing soybean lines not adapted to a particular environment typically results in poor growth and significant yield reductions. The objective of this study was to develop a molecular model for soybean maturity based on the alleles underlying the major maturity loci: E1, E2, and E3.ResultsWe determined the allelic variation and diversity of the E maturity genes in a large collection of soybean landraces, North American ancestors, Chinese cultivars, North American cultivars or expired Plant Variety Protection lines, and private-company lines. The E gene status of accessions in the USDA Soybean Germplasm Collection with SoySNP50K Beadchip data was also predicted. We determined the E allelic combinations needed to adapt soybean to different MGs in the United States (US) and discovered a strong signal of selection for E genotypes released in North America, particularly the US and Canada.ConclusionsThe E gene maturity model proposed will enable plant breeders to more effectively transfer traits into different MGs and increase the overall efficiency of soybean breeding in the US and Canada. The powerful yet simple selection strategy for increasing soybean breeding efficiency can be used alone or to directly enhance genomic prediction/selection schemes. The results also revealed previously unrecognized aspects of artificial selection in soybean imposed by soybean breeders based on geography that highlights the need for plant breeding that is optimized for specific environments.

Sorghum Landrace Collections from Cooler Regions of the World Exhibit Magnificent Genetic Differentiation and Early Season Cold Tolerance.

Cold temperature is an important abiotic stress affecting sorghum production in temperate regions. It reduces seed germination, seedling emergence and seedling vigor thus limiting the production of the crop both temporally and spatially. The objectives of this study were (1) to assess early season cold temperature stress response of sorghum germplasm from cooler environments and identify sources of tolerance for use in breeding programs, (2) to determine population structure and marker-trait association among these germplasms for eventual development of marker tools for improving cold tolerance. A total of 136 sorghum accessions from cooler regions of the world were phenotyped for seedling growth characteristics under cold temperature imposed through early planting. The accessions were genotyped using 67 simple sequence repeats markers spanning all ten linkage groups of sorghum, of which 50 highly polymorphic markers were used in the analysis. Genetic diversity and population structure analyses sorted the population into four subpopulations. Several accessions distributed in all subpopulations showed either better or comparable level of tolerance to the standard cold tolerance source, Shan qui red. Association analysis between the markers and seedling traits identified markers Xtxp34, Xtxp88, and Xtxp319 as associated with seedling emergence, Xtxp211 and Xtxp304 with seedling dry weight, and Xtxp20 with seedling height. The markers were detected on chromosomes previously found to harbor QTLs associated with cold tolerance in sorghum. Once validated these may serve as genomic tools in marker-assisted breeding or for screening larger pool of genotypes to identify additional sources of cold tolerance.

Barley Types and Varieties in Spain: A Historical Overview

Barley is currently the most cultivated crop in Spain with about three million ha. Its importance stems from its adaptation to areas with poor soil conditions and water stress. The aim of this work is to describe the historical evolution of barley types and varieties of barley grown by farmers in Spain. A historical review has been performed consulting articles and books on history, archeology, and agronomy related with the issue. Different web sites and articles have been also consulted about the current varietal state of barley in Spain. Another important information source came from the CRF (Center of Plant Genetic Resources) of Spain where a great collection of landraces is preserved. First barleys came to Spain about 7600 years BP by three sites: north, east and south. The south entrance is special, because those genotypes could came from a secondary domestication center of barley located in Morocco. Crop spread throughout the country and its cultivation were reported by Romans, Arabs, and Christians after the ‘Reconquista’ (re-conquest). At the beginning of the nineteenth century the first attempt of classification was carried out. Until the 1940s, most barley acreage was sown with ancient landraces, but from that period onward a steady varietal renovation took place up to the present. The history of barley types and varieties in Spain is rich, and a great set of landraces is preserved in seed banks. These landraces may contain genes for resistance and tolerance to biotic and abiotic stresses.

Genome-Wide Association Study for Pre-harvest Sprouting Resistance in a Large Germplasm Collection of Chinese Wheat Landraces.

Pre-harvest sprouting (PHS) is mainly caused by the breaking of seed dormancy in high rainfall regions, which leads to huge economic losses in wheat. In this study, we evaluated 717 Chinese wheat landraces for PHS resistance and carried out genome-wide association studies (GWAS) using to 9,740 DArT-seq and 178,803 SNP markers. Landraces were grown across six environments in China and germination testing of harvest-ripe grain was used to calculate the germination rate (GR) for each accession at each site. GR was highly correlated across all environments. A large number of landraces (194) displayed high levels of PHS resistance (i.e., mean GR < 0.20), which included nine white-grained accessions. Overall, white-grained accessions displayed a significantly higher mean GR (42.7–79.6%) compared to red-grained accessions (19.1–56.0%) across the six environments. Landraces from mesic growing zones in southern China showed higher levels of PHS resistance than those sourced from xeric areas in northern and north-western China. Three main quantitative trait loci (QTL) were detected by GWAS: one on 5D that appeared to be novel and two co-located with the grain color transcription factor Tamyb10 on 3A and 3D. An additional 32 grain color related QTL (GCR-QTL) were detected when the set of red-grained landraces were analyzed separately. GCR-QTL occurred at high frequencies in the red-grained accessions and a strong correlation was observed between the number of GCR-QTL and GR (R2 = 0.62). These additional factors could be critical for maintaining high levels of PHS resistance and represent targets for introgression into white-grained wheat cultivars. Further, investigation of the origin of haplotypes associated with the three main QTL revealed that favorable haplotypes for PHS resistance were more common in accessions from higher rainfall zones in China. Thus, a combination of natural and artificial selection likely resulted in landraces incorporating PHS resistance in China.

Detection and validation of genomic regions associated with resistance to rust diseases in a worldwide hexaploid wheat landrace collection using BayesR and mixed linear model approaches.

BayesR and MLM association mapping approaches in common wheat landraces were used to identify genomic regions conferring resistance to Yr, Lr, and Sr diseases. Deployment of rust resistant cultivars is the most economically effective and environmentally friendly strategy to control rust diseases in wheat. However, the highly evolving nature of wheat rust pathogens demands continued identification, characterization, and transfer of new resistance alleles into new varieties to achieve durable rust control. In this study, we undertook genome-wide association studies (GWAS) using a mixed linear model (MLM) and the Bayesian multilocus method (BayesR) to identify QTL contributing to leaf rust (Lr), stem rust (Sr), and stripe rust (Yr) resistance. Our study included 676 pre-Green Revolution common wheat landrace accessions collected in the 1920-1930s by A.E. Watkins. We show that both methods produce similar results, although BayesR had reduced background signals, enabling clearer definition of QTL positions. For the three rust diseases, we found 5 (Lr), 14 (Yr), and 11 (Sr) SNPs significant in both methods above stringent false-discovery rate thresholds. Validation of marker-trait associations with known rust QTL from the literature and additional genotypic and phenotypic characterisation of biparental populations showed that the landraces harbour both previously mapped and potentially new genes for resistance to rust diseases. Our results demonstrate that pre-Green Revolution landraces provide a rich source of genes to increase genetic diversity for rust resistance to facilitate the development of wheat varieties with more durable rust resistance.

Characterization of celiac disease related oat proteins: bases for the development of high quality oat varieties suitable for celiac patients

Some studies have suggested that the immunogenicity of oats depends on the cultivar. RP-HPLC has been proposed as a useful technique to select varieties of oats with reduced immunogenicity. The aim of this study was to identify both the avenin protein patterns associated with low gluten content and the available variability for the development of new non-toxic oat cultivars. The peaks of alcohol-soluble avenins of a collection of landraces and cultivars of oats have been characterized based on the RP-HPLC elution times. The immunotoxicity of oat varieties for patients with celiac disease (CD) has been tested using a competitive ELISA based on G12 monoclonal antibody. The oat lines show, on average, seven avenin peaks giving profiles with certain similarities. Based on this similarity, most of the accessions have been grouped into avenin patterns. The variability of RP-HPLC profiles of the collection is great, but not sufficient to uniquely identify the different varieties of the set. Overall, the immunogenicity of the collection is less than 20 ppm. However, there is a different distribution of toxicity ranges between the different peak patterns. We conclude that the RP-HPLC technique is useful to establish groups of varieties differing in degree of toxicity for CD patients.

Novel Sources of Leaf Rust Resistance in Winter Wheat

Leaf rust is one of the most widespread diseases of wheat (Titicum aestivum L.), causing significant yield losses. More than 70 leaf rust resistance genes have been identified, but most of them have lost their effectiveness in the southern Great Plains of the United States. The objectives of this study were to evaluate leaf rust resistance of newly released wheat breeding lines and to identify novel resistance sources from a worldwide collection of landraces and historical cultivars. Results showed that only 4 out of 183 cultivars and breeding lines recently developed in the United States were highly resistant in the seedling stage to Pt2013, a bulk of Puccinia triticina Eriks. (Pt) races collected from multiple fields in Oklahoma in 2013, indicating the urgency of finding new resistance genes. We screened a set of 2171 accessions using Pt2013 and identified 26 landraces and 61 historical cultivars exhibiting high resistance. In addition, 159 landraces and 309 historical cultivars showed moderate resistance to Pt2013. These highly or moderately resistant accessions were further evaluated for their responses to another two Pt races predominant in Oklahoma in 2015, Pt52‐2 and Pt54‐1, and 25 of them showed high resistance to these two races and to the race composite. Another 66 and 53 accessions showed high resistance to one and two Pt races, respectively. Genetic diversity analysis using 5011 single‐nucleotide polymorphism markers identified genetically diverse resistance sources. The resistance sources identified in this study may be valuable for breeding leaf rust resistance.

Evaluation of diversity in Bulgarian pepper cultivars by agronomical traits and ISSR markers

Information about the genetic variation among cultivars of vegetable crops is of vital importance for improvement of plant breeding programmes worldwide. The objectives of this study were to group 19 pepper (Capsicum annuum L.) cultivars from the collection of Maritsa Vegetable Crops Research Institute, Plovdiv, Bulgariainto clusters according to their distances as estimated by agronomic traits and 9 di-and tri -nucleotide inter simple sequence repeat polymorphism (ISSR) markers and to assess the relationships between them. The phenotypic characterization during 3 consecutive years revealed significant differences among Bulgarian cultivars for the studied 13 phenotypic traits. The biplot analysis of quantitative traits showed that the most strongly correlating traits with the first axis (55.6% of variance) were fruit width, fruit weight and pericarp thickness (in the negative direction of the axis), and plant height (PH) (in the positive direction). The most discriminative traits, considering the second axis (22.6% of variance) were fruit length (FL) and to a lesser extent the stem height (StH). The correspondence analysis of the qualitative traits showed that the intensity of the colour of the fruit (before and at maturity), fruit colourbefore maturity and fruit shape in longitudinal section were the most discriminative characteristics for the first two dimensions. The agronomic traits data and 7 dinucleotide ISSR primers were used to estimate the pairwise genetic distances. Higher mean phenotypic distance (0.414) in comparison to the genotypic ones (0.214) among the cultivars was observed, indicating higher phenotypic diversity among them. A highly signi?cant, positive correlation between the agronomic data and ISSR marker-based matrices (r=0.41, p=0.001)was detected. This indicates that ISSR distance tended to re?ect that of the agronomics ones. However, additional molecular studies and large collection of highly diverse genotypes are needed to reveal associations between the marker loci and specific QTLs. The research initiated is a base for more precise estimation of genetic distances between pepper genotypes from the available large collection of landraces, local and modern cultivars including large number of highly polymorphic markers.

Promoting the Use of Common Oat Genetic Resources through Diversity Analysis and Core Collection Construction.

The assessment of diversity and population structure and construction of a core collection is beneficial for the efficient use and management of germplasm. A unique collection of common oat landraces, cultivated in the temperate climate of central Europe until the end of the twentieth century, is preserved in the Polish gene bank. It consists of 91 accessions that have never been used in breeding programs. In order to optimise the use of this genetic resource, we aimed to: (1) determine genetic and agro-morphological diversity, (2) identify internal genetic variation of the tested accessions, (3) form a core collection and (4) recognise the accessions useful for breeding programs or re-release for cultivation. The collection was screened using ISSR markers (1520 loci) and eight agro-morphological traits. Uniquely, we performed molecular studies based on 24 individuals of every accession instead of bulk samples. Therefore, assessment of the degree of diversity within each population and the identification of overlapping gene pools were possible. The observed internal diversity (Nei unbiased coefficient) was in the range of 0.17–0.31. Based on combined genetic and agro-morphological data, we established the core collection composed of 21 landraces. Due to valuable compositions of important traits, some accessions were also identified as useful for breeding programs. The population structure and principal coordinate analysis revealed two major clusters. Based on the previous results, the accessions classified within the smaller one were identified as obsolete varieties instead of landraces. Our results show that the oat landraces are, in general, resistant to local races of diseases, well adapted to local conditions and, in some cases, yielding at the level of modern varieties. Therefore, in situ conservation of the landraces in the near future may be satisfactory for both farmers and researchers in terms of the genetic resources preservation.

Genetic diversity and differentiation in citron watermelon [Citrullus lanatus var. citroides] landraces assessed by simple sequence repeat markers

Citron watermelon genetic resources are useful for dessert watermelon breeding. The objective of the present study was to assess the genetic diversity present among citron watermelon landrace collections of South Africa using simple sequence repeat (SSR) markers. Thirty four diverse citron watermelon landraces were genotyped using 10 SSR markers. The markers amplified a total of 72 alleles from the sampled populations. Number of alleles ranged from 2 to 17 with a mean of 7.2 per locus. Number of effective alleles ranged from 1.03 to 6.74 with a mean of 3.54. The mean observed and expected heterozygosity were 0.48 and 0.60, respectively. The mean inbreeding coefficient was 0.18 suggesting high levels of heterozygosity among the collections. The mean polymorphic information content (PIC) of the SSR loci was 0.60 suggesting their value in genetic diversity analysis of watermelon. Analysis of molecular variance revealed highly significant difference (P<0.001) among and within individuals. Among and within individuals variance contributed 21 and 78% of the total genetic variance. Cluster analysis separated the genotypes into three distinct genetic groups revealing the presence of wide genetic variation among the citron watermelon genotypes studied. The study identified 5 distinct genotypes from cluster I, 7 from cluster II and 5 from cluster III. These are recommended for further phenotyping using horticultural attributes for effective breeding and strategic conservation.