Coast Of Canada Research Articles

Pathogenic variants carrier screening in New Brunswick: Acadians reveal high carrier frequency for multiple genetic disorders

BackgroundFounder populations that have recently undergone important genetic bottlenecks such as French-Canadians and Ashkenazi Jews can harbor some pathogenic variants at a higher carrier rate than the general population, putting them at a higher risk for certain genetic diseases. In these populations, there can be considerable benefit to performing ethnic-based or expanded preconception carrier screening, which can help in the prevention or early diagnosis and management of some genetic diseases. Acadians are descendants of French immigrants who settled in the Atlantic Coast of Canada in the seventeenth century. Yet, the Acadian population has never been investigated for the prevalence/frequency of disease-causing genetic variants.MethodsAn exome sequencing panel for 312 autosomal recessive and 30 X-linked diseases was designed and specimens from 60 healthy participants were sequenced to assess carrier frequency for the targeted diseases.ResultsIn this study, we show that a sample population of Acadians in South-East New Brunswick harbor variants for 28 autosomal recessive and 1 X-linked diseases, some of which are significantly more frequent in comparison to reference populations.ConclusionResults from this pilot study suggests a need for further investigation of genomic variation in this population and possibly implementation of targeted carrier and neonatal screening programs.

Thermal Metrics to Identify Canadian Coastal Environments

A thermal metric developed using the day-to-day temperature variability framework that was previously applied to the east coast of China has been adapted for Canadian climate station data. The same metric, based on the variability of the minimum temperature of the day, was able to distinguish between coastal and inland stations, especially when the winter months of December, January and February, were removed from the analysis. While the threshold of the metric that distinguished between the two groups was different than that developed for the east coast of China, it was nonetheless unambiguous. The range of latitudes in the Canadian setting was sufficiently narrow that a latitude correction, as was performed for the China climate stations, was not required. A comparison with a more traditional measure of continentality suggests that the thermal variability measure performs better at identifying the coastal/continental nature of the climate station data. This work also suggests that a more nuanced treatment of winter months should be considered for all such measures in colder climates.

A Measurement System to Monitor Propulsion Performance and Ice-Induced Shaftline Dynamic Response of Icebreakers

Polar navigation entails challenges that affect the continuation of ship operations in severe ice conditions. Due to ice-propeller interaction, propulsion shafting segments are often at a high risk of failure. Efficient methods for shaft line design are hence needed to ensure the safety of ice-going vessels and propulsion reliability. To this end, full-scale measurements have proven essential to support the development of ship-design tools and updated safety regulations for ice-going vessels. This paper presents a unique integrated measurement system that employs measuring equipment to monitor Polar-Class vessel performance and shaft line dynamics during ice navigation. The system was installed on board the Canadian Coast Guard (CCG) icebreaker Henry Larsen. This experimental concept aims to monitor the shaft’s torque and thrust fluctuations during ice navigation to obtain information about the ship’s propulsion efficiency. In the paper, we describe the arrangement of the measurement system and the components it features. Finally, we present preliminary datasets acquired during two icebreaking expeditions. This work is framed into a broader research project, which includes the long-term objective to determine a correlation between sea ice conditions and the dynamic response of shaft lines.

Arctic sea ice anomalies during the MOSAiC winter 2019/20

Abstract. During the winter of 2019/2020, as the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) project started its work, the Arctic Oscillation (AO) experienced some of its largest shifts, ranging from a highly negative index in November 2019 to an extremely positive index during January–February–March (JFM) 2020. The permanent positive AO phase for the 3 months of JFM 2020 was accompanied by a prevailing positive phase of the Arctic Dipole (AD) pattern. Here we analyze the sea ice thickness (SIT) distribution based on CryoSat-2/SMOS satellite-derived data augmented with results from the hindcast simulation by the fully coupled Regional Arctic System Model (RASM) from November 2019 through March 2020. A notable result of the positive AO phase during JFM 2020 was large SIT anomalies of up to 1.3 m that emerged in the Barents Sea (BS), along the northeastern Canadian coast and in parts of the central Arctic Ocean. These anomalies appear to be driven by nonlinear interactions between thermodynamic and dynamic processes. In particular, in the Barents and Kara seas (BKS), they are a result of enhanced ice growth connected with low-temperature anomalies and the consequence of intensified atmospherically driven sea ice transport and deformations (i.e., ice divergence and shear) in this area. The Davies Strait, the east coast of Greenland and the BS regions are characterized by convergence and divergence changes connected with thinner sea ice at the ice borders along with an enhanced impact of atmospheric wind forcing. Low-pressure anomalies that developed over the eastern Arctic during JFM 2020 increased northerly winds from the cold Arctic Ocean to the BS and accelerated the southward drift of the MOSAiC ice floe. The satellite-derived and simulated sea ice velocity anomalies, which compared well during JFM 2020, indicate a strong acceleration of the Transpolar Drift relative to the mean for the past decade, with intensified speeds of up to 6 km d−1. As a consequence, sea ice transport and deformations driven by atmospheric surface wind forcing accounted for the bulk of the SIT anomalies, especially in January 2020 and February 2020. RASM intra-annual ensemble forecast simulations with 30 ensemble members forced with different atmospheric boundary conditions from 1 November 2019 through 30 April 2020 show a pronounced internal variability in the sea ice volume, driven by thermodynamic ice-growth and ice-melt processes and the impact of dynamic surface winds on sea ice formation and deformation. A comparison of the respective SIT distributions and turbulent heat fluxes during the positive AO phase in JFM 2020 and the negative AO phase in JFM 2010 corroborates the conclusion that winter sea ice conditions in the Arctic Ocean can be significantly altered by AO variability.

An automatic lake-model application using near-real-time data forcing: development of an operational forecast workflow (COASTLINES) for Lake Erie

Abstract. For enhanced public safety and water resource management, a three-dimensional operational lake hydrodynamic forecasting system, COASTLINES (Canadian cOASTal and Lake forecastINg modEl System), was developed. The modeling system is built upon the three-dimensional Aquatic Ecosystem Model (AEM3D) model, with predictive simulation capabilities developed and tested for a large lake (i.e., Lake Erie). The open-access workflow derives model forcing, code execution, post-processing, and web-based visualization of the model outputs, including water level elevations and temperatures, in near-real time. COASTLINES also generates 240 h predictions using atmospheric forcing from 15 and 25 km horizontal-resolution operational meteorological products from the Environment Canada Global Deterministic Forecast System (GDPS). Simulated water levels were validated against observations from six gauge stations, with model error increasing with forecast horizon. Satellite images and lake buoys were used to validate forecast lake surface temperature and the water column thermal stratification. The forecast lake surface temperature is as accurate as hindcasts, with a root-mean-square deviation <2 ∘C. COASTLINES predicted storm surges and up-/downwelling events that are important for coastal flooding and drinking water/fishery management, respectively. Model forecasts are available in real time at https://coastlines.engineering.queensu.ca/ (last access: January 2022​​​​​​​). This study provides an example of the successful development of an operational forecasting workflow, entirely driven by open-access data, that may be easily adapted to simulate aquatic systems or to drive other computational models, as required for management and public safety.

Numerical Investigation of Climate Change Effects on Storm Surges and Extreme Waves on Canada’s Pacific Coast

Storm surges and waves are key climate-driven parameters affecting the design and operation of ports and other infrastructure on the coast. Reliable predictions of future storm surges and waves are not yet available for the west coast of Canada, and this data gap hinders effective climate risk assessment, planning and adaptation. This paper presents numerical simulations of storm surges and waves in British Columbia coastal waters under a future climate (Representative Concentration Pathway) scenario (RCP8.5). The numerical models were first forced by wind and surface pressure fields from the ERA-5 global reanalysis, and calibrated and validated using historical wave and water level records. The models were then driven by atmospheric data from four regional climate models (RCMs) to investigate potential changes in the frequency and magnitude of storm surges and extreme waves over the 21st century. The model outputs were analyzed to determine the potential impacts of climate change on storm surges and wave effects at key ports and transportation assets in western Canada. The study is the first of its kind to utilize unstructured, computational models to simulate storm surges and waves for the entire western Canada coastal region, while maintaining the high spatial resolution in coastal sub-basins needed to capture local dynamic responses.

Canada’s Internet-Connected Ocean

Over fifteen years ago, Ocean Networks Canada (ONC) began with the world’s first large-scale, interactive, real-time portal into the ocean, bringing continuous, real-time data to the surface for applications in scientific research, societal benefits, and supporting Canada’s ocean industry. This marked the dawn of the Internet-connected ocean, enabling a more fulsome understanding of the ocean through ocean intelligence. These open data have improved our ability to monitor and understand our changing ocean offshore all three coasts of Canada, thanks to diversity of sensor systems to monitor earthquakes and tsunamis, deep sea biodiversity, whales, hydrothermal vents, neutrinos, ocean noise, ocean acidification, forensics experiments, and the impact of climate change, including sea ice thinning in the Arctic. This pioneering approach began in the late 1990s, when scientists began developing a new way of doing ocean science that was no longer limited by weather and ship-time. They imagined a permanent presence in the ocean of sensors to allow a continuous flow of ocean data via the Internet. This big science began to take shape early this century, when a partnership between United States and Canadian institutions was established. ONC evolved out of this international collaboration with seed funding from the Canada Foundation for Innovation, while in the United States, the Ocean Observatories Initiative (OOI) was funded. ONC works closely with OOI on that span the countries’ west coast border. Recently similar observing initiatives in Europe have begun, led by EMSO, which now has a close collaboration with ONC as an Associate Member.

Torsional vibration analysis of diesel driven propulsion systems: The case of a polar-class vessel

The reliability of marine propulsion plants of ice-going vessels is essential in preserving ship safety during ice navigation. Therefore, the development of reliable design tools of the transmission shafting systems is fundamental to simulate ice–propeller interaction processes correctly. This paper outlines a methodology to model the torsional dynamics of fully-geared, Diesel-driven propulsion systems; specifically, a novel analytical model to simulate the dynamic Diesel engine torque is described. We consider the Canadian Coast Guard heavy icebreaker Terry Fox as a case study, whose propulsion plant includes two shaftlines driven by two 4-stroke Diesel engines each and equipped with controllable pitch propellers (CPP). On this vessel, we performed full-scale measurements during open-water sea trials to: (i) validate the Diesel-drive mathematical model; (ii) update the numerical eigenfrequencies of the system; (iii) determine the curve of the propeller-absorbed hydrodynamic torque. Finally, we simulate the dynamic response of the shaftline’s model by applying an ice–propeller transient excitation. The results indicate the effectiveness of the proposed methodology to simulate the Diesel engine torque, and the significance of considering the CPP pitch variation in transient-state conditions when ice-induced loads are concerned.

Regulation of Arctic Shipping in Canada and Russia

As Arctic navigation increases and states work, both at the international and the domestic level, at ensuring legal readiness, this article takes a closer look at regulation of Arctic Shipping in Canada and Russia. The analysis first focuses on the current domestic regimes that have developed over the past decades. It highlights that dissimilar political, economic and environmental contexts have shaped not only different shipping patterns off the Canadian and Russian coasts, but also dissimilar coastal state approaches that do not seem to converge noticeably under the influence of the Polar Code. The analysis then turns to challenges that lay ahead as existing regimes could be called into question due to receding ice cover and may need to adapt to evolving shipping patterns and technological innovations.

Radioactivity Concentration Measurements in Fish and Shellfish Samples from the West Coast of Canada after the Fukushima Nuclear Accident (2011-2018)

Radioactivity Concentration Measurements in Fish and Shellfish Samples from the West Coast of Canada after the Fukushima Nuclear Accident (2011-2018)

Winter observations alter the seasonal perspectives of the nutrient transport pathways into the lower St. Lawrence Estuary

Abstract. The St. Lawrence Estuary connects the Great Lakes with the Atlantic Ocean. The accepted view, based on summer conditions, is that the estuary's surface layer receives its nutrient supply from vertical mixing processes. This mixing is caused by the estuarine circulation and tides interacting with the topography at the head of the Laurentian Channel. During winter when ice forms, historical process-based studies have been limited in scope. Winter monitoring has been typically confined to vertical profiles of salinity and temperature as well as near-surface water samples collected from a helicopter for nutrient analysis. In 2018, however, the Canadian Coast Guard approved a science team to sample in tandem with its ice-breaking and ship escorting operations. This opportunistic sampling provided the first winter turbulence observations, which covered the largest spatial extent ever measured during any season within the St. Lawrence Estuary and the Gulf of St. Lawrence. The nitrate enrichment from tidal mixing resulted in an upward nitrate flux of about 30 nmol m−2 s−1, comparable to summer values obtained at the same tidal phase. Further downstream, deep nutrient-rich water from the gulf was mixed into the subsurface nutrient-poor layer at a rate more than an order of magnitude smaller than at the head. These fluxes were compared to the nutrient load of the upstream St. Lawrence River. Contrary to previous assumptions, fluvial nitrate inputs are the most significant source of nitrate in the estuary. Nitrate loads from vertical mixing processes would only exceed those from fluvial sources at the end of summer when fluvial inputs reach their annual minimum.

Characterizing Atmospheric Aerosols off the Atlantic Canadian Coast During C-FOG

Characterizing Atmospheric Aerosols off the Atlantic Canadian Coast During C-FOG

Evaluation of a global total water level model in the presence of radiational S[formula omitted] tide

The development of a computationally efficient scheme for predicting the global distribution of total water level (TWL) is discussed. The ocean model is barotropic, has a horizontal grid spacing of 1/12°, and is based on the NEMO modeling framework. It is forced by the gravitational potential and hourly atmospheric fields for 2008. Hourly time spacing was required to resolve the S2 tide in global air pressure and wind. The predicted tide in water deeper than 400 m was nudged to TPXO8 “observations” of tidal elevation or current using a scheme called tidal nudging (Kodaira et al., 2019). The benefit of nudging horizontal velocity in the momentum equation, compared to sea level in the continuity equation, is discussed. Tidal nudging is shown to improve tidal predictions of sea level at the coast, particularly at the S2 tidal frequency. The predicted radiational S2 tide in sea level forced solely by the S2 tide in global air pressure reaches amplitudes exceeding 80 cm. Decreasing the time spacing of the air pressure forcing from 1 h to 3 h reduces the S2 amplitude in air pressure by a factor of 0.82, consistent with expectations based on Fourier analysis. This highlights the importance of using hourly atmospheric forcing when predicting the global sea level response to atmospheric forcing. The radiational S2 tide in sea level is subject to strong nonlinear interaction with the gravitational tide, leading to a pronounced attenuation of the radiational S2 tide. The attenuation is explained by an increase in effective bottom friction at the S2 frequency due to the presence of the gravitational tide. Four schemes for predicting TWL are evaluated to quantify the impact of tidal nudging and nonlinear interaction of tide and surge. Using TWLs observed by 304 coastal tide gauges, we show it is necessary to include both tidal nudging and nonlinear interaction. Plans for the further development of an operational flood forecast system for the Canadian coast, based on the above model, are discussed.

Corrosion Behavior of Unprotected Weldments in Marine Environments

In the absence of protective measures such as paint or cathodic protection systems, steel weldments, immersed in seawater, are expected to corrode freely. This is particularly true for the ice breakers serving the Canadian Coast Guard, where, in the course of operations, paint is scoured from the vessel hulls and cathodic protection systems were not installed. However, the weldments do not corrode uniformly. In some cases, the weld itself corrodes rapidly and requires regular replacement. At the other extreme, the heat-affected zones (HAZ) corrode instead—a potential safety and integrity concern. The morphology of ice breaker weldment corrosion has altered over the last few decades and this has been attributed to changes in welding consumables and processes. The current study is an investigation into the corrosion characteristics of weldments with a particular focus on the compositional differences between weld metal and hull plate steels. A method has been developed for numerically describing the corrosion of weldment regions (plate steel, HAZ, weld cap passes, and weld re-heated zones) arising from an accelerated corrosion test. This in turn enabled the development of an equation that predicts weldment corrosion performance based entirely on material composition. This permits selection of welding consumables that are anticipated to give good corrosion performance, avoiding the extremes of rapid weld metal corrosion and preferential HAZ attack.

Two new species of encrusting sponge (Porifera, family Crellidae) from eastern Canada

Two new species of Crellidae Dendy, 1922 from the east coast of Canada are described. The first is Crella (Pytheas) cutis sp. nov., a massively encrusting species of Crella (Pytheas) collected from depths of 84 to 249 m in the Gulf of St. Lawrence and on the Scotian Shelf. The second is Crellomima mehqisinpekonuta sp. nov., a thinly encrusting sponge found at diving depths in the Bay of Fundy. We also report the first records of Crellomima derma Hentschel, 1929 from outside the type locality (Barents Sea). All known species of Crellomima are reviewed based on type material.

Search and Rescue, Climate Change, and the Expansion of the Coast Guard Auxiliary in Inuit Nunangat / the Canadian Arctic

In Canada’s maritime spaces, members of the all-volunteer Canadian Coast Guard Auxiliary (CCGA) provide essential marine search and rescue (SAR) services and promote boating safety. By 2015, however, only nine communities North of 55 possessed Auxiliary units and three of these struggled to remain operational. In 2020, the CCGA counted 20 units in the Coast Guard’s new Arctic Region, with 333 members and 31 vessels—the majority of which are located in Inuit Nunangat (the Inuit homeland in Canada) and comprised of Inuit members—and plans for future expansion.
 Based on stakeholder engagement, government documents, and media analysis, this article assesses the Coast Guard’s Arctic Search and Rescue Project and the concomitant programming under the Oceans Protection Plan that has facilitated the Auxiliary’s expansion in the Arctic. Our analysis asks two overarching questions: Why has this program been able to expand the Auxiliary after previous efforts failed? How has this expansion improved the SAR system and marine safety in Canada’s Arctic, and are there areas for improvement?
 The article makes four primary arguments:
 
 The success of the project has been fueled by strong community engagement and relationship-building efforts, effective data collection that has fostered a better understanding of the marine risks facing Arctic communities, and consistent access to the training and equipment required to safely conduct marine SAR operations
 Members of Arctic Auxiliary units strengthen SAR operations by improving response times, serving as SAR detectives, contributing to marine safety, and, most importantly, by integrating their local and traditional knowledge and skills into the broader search and rescue system.
 Training and organizational gaps exist that should be addressed as the Coast Guard continues to bolster existing units and establish new ones.
 The Arctic SAR Project has provided several best practices and lessons that should guide the implementation of additional resilience-building measures in the North and in other Indigenous communities.

Changes in Underwater Noise and Vessel Traffic in the Approaches to Halifax Harbor, Nova Scotia, Canada

Over the past two years, researchers at Fisheries and Oceans Canada have been running an acoustic monitoring project at multiple study sites throughout Nova Scotia, Canada to investigate baleen whale presence and levels of underwater noise. At the onset of the COVID-19 pandemic, a passive acoustic monitor (PAM) was in place in the study site located in the approaches to Halifax Harbor, a major Canadian port. This provided a unique opportunity to determine if changes in vessel noise levels occurred after pandemic restrictions were put in place. To investigate this, we analyzed and compared acoustic data collected from March 28 to April 28 and August 6 to October 22 in both 2019 and 2020. We also investigated possible changes in vessel traffic from February 1 through April 28 and July 1 through July 28 in 2019 and 2020 using terrestrial-based automatic identification system (AIS) data provided by the Canadian Coast Guard and cargo information provided by the Port of Halifax. The acoustic data were analyzed in 1/3 octave frequency bands. For the 89.1–112 Hz frequency band, we found an 8.4 dB increase in the daily minimum sound pressure level (SPL) in April 2020 compared to April 2019 due the presence of a large crane vessel stationed near the mooring site. For the period of August to October, we found an approximately 1.7 dB reduction in the same metric from 2019 to 2020. The most noticeable change in vessel composition was the dramatic decrease in the number and occurrence of pleasure craft in July 2020 compared to the same period in 2019. While this analysis looked at only a single PAM and a limited amount of data, we observed changes in sound levels in the frequency band known to be associated with shipping as well as changes in vessel traffic; we conclude that these observed changes may be related to pandemic restrictions.

Remote, but Not Isolated—Microplastics in the Sub-surface Waters of the Canadian Arctic Archipelago

As the remote Canadian Arctic Archipelago (CAA) becomes increasingly connected to the rest of the world, there is an impetus to monitor the possible impact of this connectivity. The potential for increases in localised sources of plastic pollution resulting from the increasing navigability of the remote north has yet to be explored. Here we investigate microplastic samples which were collected aboard the Canadian Coast Guard Ship (CCGS) Amundsen in the summer of 2018 using the underway pump and a filtration system with Fourier transform infrared analysis. We investigate the character, abundance, and distribution of microplastic particles and fibres in the sub-surface waters across the Canadian Arctic and add to the limited dataset on plastic pollution in this region. We find that there are low concentrations of microplastics ranging from 0 to 0.282 n L–1 (average 0.031 ± 0.017 n L–1), comprising 71% polyester and acrylics. We investigate the size distribution of retained particles and fibres on three different filter mesh sizes connected to the underway pump (300, 100, and 50 μm) and find that a 300 μm mesh and a 100 μm mesh retain only 6 and 56%, respectively, of the total particles and fibres. We explore the role of shipping as a potential source of textile fibres and we suggest that future monitoring of plastics in the Canadian Arctic should use the current shipping fleet to monitor its own plastic footprint, utilising the underway pump and mesh sizes < 100 μm.

Sediment-laden sea ice in southern Hudson Bay: Entrainment, transport, and biogeochemical implications

During a research expedition in Hudson Bay in June 2018, vast areas of thick (>10 m), deformed sediment-laden sea ice were encountered unexpectedly in southern Hudson Bay and presented difficult navigation conditions for the Canadian Coast Guard Ship Amundsen. An aerial survey of one of these floes revealed a maximum ridge height of 4.6 m and an average freeboard of 2.2 m, which corresponds to an estimated total thickness of 18 m, far greater than expected within a seasonal ice cover. Samples of the upper portion of the ice floe revealed that it was isothermal and fresh in areas with sediment present on the surface. Fine-grained sediment and larger rocks were visible on the ice surface, while a pronounced sediment band was observed in an ice core. Initial speculation was that this ice had formed in the highly dynamic Nelson River estuary from freshwater, but δ18O isotopic analysis revealed a marine origin. In southern Hudson Bay, significant tidal forcing promotes both sediment resuspension and new ice formation within a flaw lead, which we speculate promotes the formation of this sediment-laden sea ice. Historic satellite imagery shows that sediment-laden sea ice is typical of southern Hudson Bay, varying in areal extent from 47 to 118 km2 during June. Based on an average sediment particle concentration of 0.1 mg mL–1 in sea ice, an areal extent of 51,924 km2 in June 2018, and an estimated regional end-of-winter ice thickness of 1.5 m, we conservatively estimated that a total sediment load of 7.8 × 106 t, or 150 t km–2, was entrained within sea ice in southern Hudson Bay during winter 2018. As sediments can alter carbon concentrations and light transmission within sea ice, these first observations of this ice type in Hudson Bay imply biogeochemical impacts for the marine system.

Factors affecting the seasonal distribution and biomass of E. pacifica and T. spinifera along the Pacific coast of Canada: A spatiotemporal modelling approach.

Euphausiids are a keystone species in coastal food webs due to their high lipid content and seasonally high biomass. Understanding the habitat and environmental drivers that lead to areas of high biomass, or ‘hotspots’, and their seasonal persistence, will support the identification of important foraging regions for mid- and upper- trophic level predators. We quantify the distribution of hotspots of the two dominant species of euphausiid in the north-east Pacific Ocean: Euphausia pacifica and Thysanoessa spinifera, as well as euphausiid larvae (mixed species). The Canadian coast encompasses the northern California Current Ecosystem and the transition zone to the Alaska current, and is a highly productive region for fisheries, marine mammals, and seabirds. We used spatiotemporal modelling to predict the distribution of these three euphausiid groups in relation to geomorphic and environmental variables during the important spring-summer months (April through September) when euphausiid biomass is highest. We quantified the area, intensity, and persistence of biomass hotspots across months according to specific oceanographic ecosections developed for marine spatial planning purposes. Persistent hotspots of both adult species were predicted to occur along the 200 m depth contour of the continental slope; however, differences were predicted on the shallower Dixon shelf, which was a key area for T. spinifera, and within the Juan de Fuca Eddy system where E. pacifica hotspots occurred. The continental slope along the west coast of Vancouver Island was the only persistent hotspot region common between both adult species and euphausiid larvae. Larval distribution was more correlated with T. spinifera than E. pacifica biomass. Hotspots of adults were more persistent across months than hotspots of euphausiid larvae, which were seasonally patchy. The persistence of biomass hotspots of forage species through periods of low overall biomass could maintain trophic connectivity through perturbation events and increase ecosystem resilience to climate change.