1Center for Human Genetics and 2Hypertension Unit, University of Leuven, Campus Gasthuisberg, O&N6, B-3000 Leuven, Belgium Apolipoprotein E (apo E), a single-chain polypeptide of 299 amino acids, is a protein component of lipoproteins playing a role in lipid metabolism through its interaction with the low-density lipoprotein (LDL) and chylomicron remnant receptors. Three major isoforms, E2, E3, and E4, can be distinguished. Apo E4 differs from apo E3 at residue 112, where a cysteine is replaced by an arginine. In Apo E2, residue 158, a cysteine is substituted for arginine. At the DNA level these polymorphisms can be detected by restriction fragment length polymorphisms after digestion with HhaI (1) (Fig. 1). Apo E2 shows a significantly decreased b inding activity (<2% compared with apo E3) to both LDL and chylomicron remnant receptors and is therefore catabolized more slowly than apo E3. Consequently, the accumulat ion of the triglyceride-rich very low-density lipoprotein (VLDL) remnants and a low level of LDL cholesterol is observed. Apo E2 is supposed to play a protective role against the development of atherosclerosis. Although the affinity of apo E4 for its receptors is indistinguishable from that of apo E3, its distribution differs from apo E3 and it is catabolized more rapidly than apo E3, leading to an accumulat ion of LDL cholesterol that could favor the development of atherosclerosis. (2'3) As a consequence, apo E genotyping is of increasing importance in clinical practice to identify individuals at risk for cardiovascular diseases. Several methods have been developed for the genotyping of apo E. Some of these require two PCR steps followed by restriction digestion, (4,s) whereas the PCR method with the amplification refractory mutat ion system primers needs four reactions for each sample. (6) The method described by Hixson and W e n h a m includes one step of PCR amplif icat ion and restriction digestion. The restriction fragments are separated on an acrylamide gel and viewed under UV light after staining by e thidium bromide. (7) To allow for the large-scale genotyping of apo E, a simple and rapid method was developed for the isolation of DNA from large numbers of whole blood samples using standard glass fiber filters. PCR in the presence of FITC-dUTP then allows for the nonradioactive detection of the different restriction fragments of apo E alleles using a fluorescent DNA sequencer.
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