A total of 440 lentil ( Lens culinaris) accessions, randomly chosen from the National Gene Bank, were employed in the experiment. Fourteen polymorphic SSR markers out of 145 candidate simple sequence repeat (SSR) primer pairs were screened, and 87 allelic variations were detected. Using 14 SSR primer pairs, high level of diversity was detected with average allele number of 6.2143 and Shannon-Weaver index ( I) of 1.1869. There was a significant differentiation in the genetic diversity among the 16 diverse geographic groups of the lentil accessions. The genetic diversity within alien accessions was obviously higher than that within Chinese accessions. The 440 accessions were classified into 8 clusters using Structure 2.2 software. Multiplex genetic structure was observed according to the analyses of principal components analysis (PCA), Unweighted Pair Group Method with Arithmetic Mean (UPGMA) cluster, and population structure. The genetic distance within alien population was broader than that within Chinese population. In the Chinese population, accessions from Shanxi, Ningxia, and Gansu showed the highest genetic diversity, and it should be emphasized in genetic resource collection and conservation as well as deeper studies. Furthermore, international exchange of lentil genetic resources should be also enhanced.
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