A dual control for a nonlinear system with non-minimum phase based on the bicriterial approach is proposed and discussed. A particular class of the nonlinear input/output recursive model is composed of linear and nonlinear blocks, the latter being implemented with a multi-layered perceptron neural network. The unknown parameters of the model are estimated in real-time by the extended Kalman filter. The chosen nonlinear model with the affine structure in inputs together with the certainty equivalence principle utilization allow to obtain an analytical solution to control based on generalised minimum variance method. Behaviour of the system based on the enforcement of the certainty equivalence can negatively be affected, especially in a presence of disturbances and functional uncertainties. For that, the control action is enhanced about dual property based on the bicriterial approach that uses two separate criteria to introduce one of the opposing aspects between estimation and control.