Introduction Multiple sclerosis (MS) is an autoimmune and neurodegenerative disease of the central nervous system (CNS). The complexity of (MS) and the incompetence of a large number of promise treatments in MS urge us to plan new and more effective therapeutic approaches that aim to suppress ongoing autoimmune responses and induction of local endogenous regeneration. Stem cells (SCs) have uncovered a new view as a therapeutic tool in neurological disorders such as MS. These cells are pluripotent cells with the capacity to give rise to different cell types. There are two main stem cell types, embryonic stem cells (ESs) and adult stem cells. In adults, stem cells include hematopoietic stem cells, mesenchymal stem cells (MSCs) and neural stem cells. MSCs are self-replicating cells which can play a role in differentiating in multidirectional pathways, such as osteoblasts, chondrocytes, myocytes, marrow stromal cells, tendon–ligament fibroblasts, adipocytes and neural cells. Methods We studied recent (2007–2014) clinical trials and review articles of stem cell therapy for multiple sclerosis to achieve the best adult stem cell type and the most effective and safest route in order of managing them. In this article we will first provide an overview of the cell sources for, proposed mechanisms that contribute to the beneficial effects of stem cell transplantation and the ideal route and/or timing of stem cell-based therapies for MSC. Results Seven clinical trials were found (Table 1 ). In some studies we detect critical adverse events that has been indicated some types of SCs act as carcinogen factors. According to our research, the best stem cell to transfer MS patients was mesenchymal stem cells and injecting intravenously is the best way to administrate. By this goals we prevent from meningeal irritation that will happen in intrathecally administration. Conclusion Overall, we recommend intravenous MSCs as the best kind of stem cell therapy for autoimmune disorders like MS. It is clear that more studies should be done to prove efficacy and safety of these therapeutic approaches. Multiple sclerosis (MS) is an autoimmune and neurodegenerative disease of the central nervous system (CNS). The complexity of (MS) and the incompetence of a large number of promise treatments in MS urge us to plan new and more effective therapeutic approaches that aim to suppress ongoing autoimmune responses and induction of local endogenous regeneration. Stem cells (SCs) have uncovered a new view as a therapeutic tool in neurological disorders such as MS. These cells are pluripotent cells with the capacity to give rise to different cell types. There are two main stem cell types, embryonic stem cells (ESs) and adult stem cells. In adults, stem cells include hematopoietic stem cells, mesenchymal stem cells (MSCs) and neural stem cells. MSCs are self-replicating cells which can play a role in differentiating in multidirectional pathways, such as osteoblasts, chondrocytes, myocytes, marrow stromal cells, tendon–ligament fibroblasts, adipocytes and neural cells. We studied recent (2007–2014) clinical trials and review articles of stem cell therapy for multiple sclerosis to achieve the best adult stem cell type and the most effective and safest route in order of managing them. In this article we will first provide an overview of the cell sources for, proposed mechanisms that contribute to the beneficial effects of stem cell transplantation and the ideal route and/or timing of stem cell-based therapies for MSC. Seven clinical trials were found (Table 1 ). In some studies we detect critical adverse events that has been indicated some types of SCs act as carcinogen factors. According to our research, the best stem cell to transfer MS patients was mesenchymal stem cells and injecting intravenously is the best way to administrate. By this goals we prevent from meningeal irritation that will happen in intrathecally administration. Overall, we recommend intravenous MSCs as the best kind of stem cell therapy for autoimmune disorders like MS. It is clear that more studies should be done to prove efficacy and safety of these therapeutic approaches.