Carbon Limitation Research Articles

Nine-year fertilization promoted C sink and mediated microbial nutrient utilization in alpine meadow soil aggregates

Increased nitrogen (N) and phosphorus (P) inputs to terrestrial ecosystems, which are caused by human activities and atmospheric deposition, significantly affect soil nutrient cycling. However, information on the variations of fertilization treatments on the nutrient utilization and carbon (C) storage mechanisms in alpine meadow soil aggregates is limited. Here, we investigated the responses of microbial nutrient utilization and C storage dynamics in soil aggregates to nine-year fertilization (N, P, and NP addition) in an alpine meadow. The results demonstrated that nine-year fertilization did not affect soil aggregate stability, however, they promoted soil organic C (SOC), total N (TN), and total P (TP) accumulation and altered the microbial nutrient-limitation patterns of soil aggregates in the alpine meadow. Compared to N and NP treatments, the P addition was optimal for improving soil aggregate-associated C storage and soil C pool management index (CMI). Furthermore, the NP treatment significantly exacerbated the microbial C limitation and microbial P limitation was significantly greater with N addition alone than with P addition alone, which was consistent with the resource allocation theory. The enhanced microbial carbon limitation caused by fertilization had no significant impact on soil aggregate-associated C storage and CMI. Simultaneously, soil nutrients and enzyme activities increased with decreasing soil aggregate size. However, these changes did not affect the microbial nutrient limitation patterns and CMI, which may have been related to the stronger nutrient protection ability of microaggregates. Therefore, nine years of fertilization increased the soil aggregate-associated C sink functions and affected soil microbial nutrient-limitation patterns by altering the soil C, N and P stoichiometry in the alpine meadow. These findings provide technical support for future alpine meadow management.

Environmental control and metabolic strategies of organic-matter-responsive bacterioplankton in the Weddell Sea (Antarctica).

Heterotrophic microbial communities play a significant role in driving carbon fluxes in marine ecosystems. Despite their importance, these communities remain understudied in remote polar oceans, which are known for their substantial contribution to the biological drawdown of atmospheric carbon dioxide. Our research focused on understanding the environmental factors and genetic makeup of key bacterial players involved in carbon remineralization in the Weddell Sea, including its coastal polynyas. Our experiments demonstrated that the combination of labile organic matter supply and temperature increase synergistically boosted bacterial growth. This suggests that, besides low seawater temperature, carbon limitation also hinders heterotrophic bacterial activity. Through the analysis of metagenome-assembled genomes, we discovered distinct genomic adaptation strategies in Bacteroidia and Gammaproteobacteria, both of which respond to organic matter. Both natural phytoplankton blooms and experimental addition of organic matter favoured Bacteroidia, which possess a large number of gene copies and a wide range of functional membrane transporters, glycoside hydrolases, and aminopeptidases. In contrast, the genomes of organic-matter-responsive Gammaproteobacteria were characterized by high densities of transcriptional regulators and transporters. Our findings suggest that bacterioplankton in the Weddell Sea, which respond to organic matter, employ metabolic strategies similar to those of their counterparts in temperate oceans. These strategies enable efficient growth at extremely low seawater temperatures, provided that organic carbon limitation is alleviated.

Transient shading in agrivoltaic greenhouses: its impact on growth, architecture, and dry matter accumulation and partition in tomato plants

ABSTRACT Installing mobile photovoltaic panels could be used to protect crops, providing both shade and renewable energy. For two years (June to October 2021 and April to August 2022), we studied the effects of alternating periods of full sun and shade on tomatoes by shading the plants at different times of the day (30% less incident radiation than the control). Under shading conditions, the air temperature was slightly reduced without significantly affecting plant phenology. Temporary shading increased stem length, leaf area, and specific leaf area, indicating shade-avoidance syndrome, similar to responses under constant shading. Fruits of shaded plants accumulated less dry mass in 2022, which could be linked to a carbon limitation during the spring of 2022. We discuss the possibility of modulating shading using mobile agrivoltaic systems to optimise the climatic conditions throughout the season for optimal plant and fruit growth.

Hydrogen isotope fractionation is controlled by CO2 in coccolithophore lipids

Hydrogen isotope ratios (δ2H) represent an important natural tracer of metabolic processes, but quantitative models of processes controlling H-fractionation in aquatic photosynthetic organisms are lacking. Here, we elucidate the underlying physiological controls of 2H/1H fractionation in algal lipids by systematically manipulating temperature, light, and CO2(aq) in continuous cultures of the haptophyte Gephyrocapsa oceanica. We analyze the hydrogen isotope fractionation in alkenones (αalkenone), a class of acyl lipids specific to this species and other haptophyte algae. We find a strong decrease in the αalkenone with increasing CO2(aq) and confirm αalkenone correlates with temperature and light. Based on the known biosynthesis pathways, we develop a cellular model of the δ2H of algal acyl lipids to evaluate processes contributing to these controls on fractionation. Simulations show that longer residence times of NADPH in the chloroplast favor a greater exchange of NADPH with 2H-richer intracellular water, increasing αalkenone. Higher chloroplast CO2(aq) and temperature shorten NADPH residence time by enhancing the carbon fixation and lipid synthesis rates. The inverse correlation of αalkenone to CO2(aq) in our cultures suggests that carbon concentrating mechanisms (CCM) do not achieve a constant saturation of CO2 at the Rubisco site, but rather that chloroplast CO2 varies with external CO2(aq). The pervasive inverse correlation of αalkenone with CO2(aq) in the modern and preindustrial ocean also suggests that natural populations may not attain a constant saturation of Rubisco with the CCM. Rather than reconstructing growth water, αalkenone may be a powerful tool to elucidate the carbon limitation of photosynthesis.

Advancing PFAS characterization: Development and optimization of a UV-H2O2-TOP assay for improved PFCA chain length preservation and organic matter tolerance

As per- and polyfluoroalkyl substances (PFAS) infiltrate the environment via industrial, commercial, and domestic sources, the demand for robust, cost-effective, and straightforward analytical assays intensifies to enhance PFAS characterization and quantification. To address this demand, this study introduces a novel UV-H2O2-TOP assay, identifying optimal parameters such as pH (5–9), oxidant concentration (500 mM H2O2), activation rate (63 mM H2O2 h−1), and an acceptable total organic carbon (TOC) limit (~1000 mg/L TOC) to achieve maximum PFAA precursor conversion. Additional work was performed further optimizing the UV-TOP assay, by confirming its superiority to heat activation, identifying the effectiveness of different persulfate salts, and investigating different concentrations of sodium persulfate and sodium hydroxide at a 1:2.5 ratio on PFCA yield. Our investigation concluded by applying the UV-H2O2-TOP assay, using sodium persulfate as the TOP assay oxidant, to 6:2 FTS and five different AFFF samples. High-resolution mass spectrometry and an expanded analytical suite support sample analysis, facilitating direct quantification of ultra-short chain perfluoroalkyl carboxylates (PFCAs) and common fluorotelomer compounds including 5:3/5:1:2 fluorotelomer betaine and 6:2 fluorotelomer sulfonamido betaine. Results highlight several advantages of this tandem UV-activated method, including enhanced preservation of perfluoroalkyl chains (post-oxidation of 6:2 fluorotelomer sulfonate resulted in 28 % PFHpA, 47 % PFHxA, 25 % C3–C5 PFCA), capacity to handle high TOC limits (1000 mg/L TOC), and ability to incorporate higher persulfate concentrations in a single oxidation cycle.

Response of aerobic anoxygenic phototrophic bacteria to limitation and availability of organic carbon.

Aerobic anoxygenic phototrophic (AAP) bacteria are an important component of freshwater bacterioplankton. They can support their heterotrophic metabolism with energy from light, enhancing their growth efficiency. Based on results from cultures, it was hypothesized that photoheterotrophy provides an advantage under carbon limitation and facilitates access to recalcitrant or low-energy carbon sources. However, verification of these hypotheses for natural AAP communities has been lacking. Here, we conducted whole community manipulation experiments and compared the growth of AAP bacteria under carbon limited and with recalcitrant or low-energy carbon sources under dark and light (near-infrared light, λ > 800nm) conditions to elucidate how they profit from photoheterotrophy. We found that AAP bacteria induce photoheterotrophic metabolism under carbon limitation, but they overcompete heterotrophic bacteria when carbon is available. This effect seems to be driven by physiological responses rather than changes at the community level. Interestingly, recalcitrant (lignin) or low-energy (acetate) carbon sources inhibited the growth of AAP bacteria, especially in light. This unexpected observation may have ecosystem-level consequences as lake browning continues. In general, our findings contribute to the understanding of the dynamics of AAP bacteria in pelagic environments.

Temporal variation of microbial nutrient limitation in citrus plantations: Insights from soil enzyme stoichiometry

Soil enzyme carbon (C): nitrogen (N): phosphorous (P) stoichiometry and their vector model has been widely used to elucidate the balance between microbial nutrient requirements and soil nutrient availability. However, limited knowledge is available on the dynamics of soil enzyme stoichiometry and microbial nutrient limitation following afforestation, especially in the economic forest. In this study, the effects of citrus plantation on C: N: P stoichiometry were assessed through a comparative study between cropland and citrus plantations with varying durations of afforestation (i.e., 3, 15, 25, and 35 years). It was found that the C, N, and P contents in the soil (SOC, STN, and STP), microbial biomass (MBC, MBN, and MBP), as well as the activities of C-, N-, and P-acquiring enzymes (BG, NAG, and AP), were 1.02–2.51 times higher than those in cropland. Additionally, C, N, and P contents in soil and microbial biomass increased consistently with increasing afforestation time. While the activities of C-, N-, and P-acquiring enzymes increased from 3 years to 25 years and then significantly decreased. In addition to NAG: AP, the stoichiometry of C, N, and P in soil (SOC: STN, SOC: STP, and STN: STP) and microbial biomass (MBC: MBN, MBC: MBP, and MBN: MBP), along with BG: NAG, exhibited a decline of 7.69–27.38% compared to cropland. Moreover, the majority of the C: N: P stoichiometry in soil, microbial biomass, and enzymes consistently decreased with increasing afforestation time, except for SOC: STN and NAG: AP, which exhibited an opposite trend. Furthermore, a significant decrease in microbial carbon limitation and an increase in microbial nitrogen limitation were observed with increasing afforestation time. Collectively, the dynamic of microbial nutrient limitation was primarily influenced by the interaction between soil nutrients and edaphic factors. The findings suggest that with the increasing duration of citrus plantation, it is crucial to focus on nitrogen (N) fertilization while maintaining a delicate balance between fertilization strategies and soil acidity levels.

Flow rate and kinetics of trace organic contaminants removal in black carbon-amended engineered media filters for improved stormwater runoff treatment

Urban stormwater runoff is considered a key component of future water supply portfolios for water-stressed cities. Beneficial use of runoff, such as capture for recharge of drinking water aquifers, relies on improved stormwater treatment. Many dissolved constituents, including metals and trace organic contaminants (TrOCs) such as hydrophilic pesticides and poly- and perfluoroalkyl substances (PFASs), are of concern due to their toxicity, persistence, prevalence in stormwater runoff, and poor removal in conventional stormwater control measures. This study explores the operational flow rate limitations of black carbon (BC)-amended engineered media filters for removal of a wide suite of dissolved metals and TrOCs and provides validation for a previously developed predictive TrOC transport model. Column experiments were conducted with face velocities of 40 and 60 cm h−1 to assess Douglas Fir-based biochar and regenerated activated carbon (RAC) filter performance in light of media-contaminant removal kinetic limitations. This study found that increasing the face velocity in BC-amended filters to 40 and 60 cm h−1, which are representative of field conditions, decreased the removal of total suspended solids, turbidity, dissolved hydrophilic TrOCs, and PFASs when expressed as volume treated relative to previous studies conducted at 20 cm h−1. Dissolved metals and hydrophobic TrOCs removal were not substantially affected by the increased flow rates. A predictive 1-d intraparticle pore diffusion-limited sorption model with sorption and effective tortuosity parameters determined previously from experiments conducted at 20 cm h−1 was validated for these higher flow rates. This work provides insights to the kinetic limitations of contaminant removal within biochar and RAC filters and implications for stormwater filter design and operation.

Nutrient limitation mediates soil microbial community structure and stability in forest restoration

Soil microorganisms are often limited by nutrients, representing an important control of heterotrophic metabolic processes. However, how nutrient limitations relate to microbial community structure and stability remains unclear, which creates a knowledge gap to understanding microbial biogeography and community changes during forest restoration. Here, we combined an eco-enzymatic stoichiometry model and high-throughput DNA sequencing to assess the potential roles of nutrient limitation on microbial community structure, assembly, and stability along a forest restoration sequence in the Qinling Mountains, China. Results showed that nutrient limitations tended to decrease during the oak forest restoration. Carbon and phosphorus limitations enhanced community dissimilarity and significantly increased bacterial alpha diversity, but not fungal diversity. Stochastic assembly processes primarily structured both bacterial (average contribution of 74.73 % and 74.17 % in bulk and rhizosheath soils, respectively) and fungal (average contribution of 77.23 % and 72.04 % in bulk and rhizosheath soils, respectively) communities during forest restoration, with nutrient limitation also contributing to the importance of stochastic processes in the bacterial communities. The migration rate (m) for bacteria was 0.19 and 0.23, respectively in both bulk soil and rhizosheath soil, and was greater than that for the fungi (m was 1.19 and 1.41, respectively), indicating a stronger dispersal limitation for fungal communities. Finally, nutrient limitations significantly affected bacterial and fungal co-occurrence with more interconnections occurring among weakly nutrient-limited microbial taxa and nutrient limitations reducing community stability when nutrient availability changed during forest restoration. Our findings highlight the fundamental effects of nutrient limitations on microbial communities and their self-regulation under changing environmental resources.

Upper limit of mineral-associated organic carbon in temperate and sub-tropical soils: How far is it?

Soil organic carbon (SOC) is the main terrestrial C pool and is roughly divided into stable mineral-associated organic carbon (MAOC) and particulate organic matter carbon (POC). However, the sequestration capacity of MAOC remains unquantified. Currently, soils are considered to have a limited capacity to accumulate MAOC, primarily due to the presence of fine fractions, i.e. silt and clay particles. However, it is unlikely that saturation will occur in all soils due to land use. Therefore it is necessary to investigate whether soils from different latitudes and their silt and clay fractions that comprise MAOC are saturated. We selected 71 soil samples that were physically fractionated from a Mexican inventory of vegetation with a wide range of SOC (4–186 g kg−1 soil) and clay (126–777 g kg−1 soil) contents. Soils were grouped into non-volcanic soils and allophanic Andosols. In the first group, we found a positive and highly significant linear relationship between SOC and MAOC contents, but no upper limit was detected. We found a common slope of 0.86 (R2 = 0.97, p < 0.01), i.e. 86% of the SOC was contained in MAOC irrespective of soil types and management, a value very similar to that in other studies. Conversely, for allophanic Andosols, which had SOC content twice that of non-volcanic soils, a second-order polynomial function (R2 = 0.98, p < 0.01) was established, the upper limit of which exceeded 186 g SOC kg−1 for a MAOC of 134 g kg−1. This was also supported by an increasing polynomial function of particulate organic carbon (POC) as the SOC increased. In both types of soils, maximum MAOCs were found between 700 and 800 g kg−1 of silt and clay in medium-textured soils. The amount of silt and clay particles was limited by SOC accumulation in the silt fraction as clay became saturated. These results are influenced by the mass proportion of silt and clay that follows a unique pattern in allophanic Andosols and non-volcanic soils. An investigation of a comprehensive database comprising 21,315 soil profiles sampled 0–30 cm across Mexico showed that most soils are below 186 g SOC kg−1 the bending point above which the upper limit does exist.

Varying removal of emerging organic contaminants in drinking water treatment residue-based biofilter systems: Influence of hydraulic loading rates on microbiology

Drinking water treatment residue (DWTR)-based biofilter is an environment-friendly and cost-effective technology for eliminating nutrients and emerging organic contaminants (EOCs) from natural water. This study explored the removal efficiencies of five trace-level EOCs and the associated microbial response of biofilm in two identical DWTR-based biofilters under varying hydraulic loading rate (HLR) conditions over six months of operation. The results showed that the most recalcitrant EOC (carbamazepine) was mainly removed by DWTR adsorption (7.8–11.0 ng g−1), while the response of the biofilm community to HLR significantly affected the degradation of 17α-ethinylestradiol, sulfamethoxazole, roxithromycin, and sulfathiazole (P < 0.001). A higher HLR significantly stimulated the production of extracellular polymeric substance and increased the stochasticity and diversity of community assembly, improving denitrification and the removal efficiency of DWTR-based biofilm for biodegradable roxithromycin (80 %) and sulfamethoxazole (76 %). In contrast, lower HLR led to carbon limitation and exerted substrate selection pressures, resulting in more deterministic and stable community assembly, with keystone species such as Bacillus enriched in EOC degradation-related functional genes. Moreover, co-occurrence network analysis revealed a simpler but more intensive interaction network among EOC degraders under the lower HLR condition. This interaction network facilitated the co-metabolism of influent organic carbon and the removal of more recalcitrant contaminants, 17α-ethinylestradiol (48 %) and sulfathiazole (37 %). This study offered a novel insight into biofilter management from a hybrid perspective of environmental microbiology and engineering science, highlighting the dynamic adaptation of microbes to specific EOC degradation under varying HLR conditions.

Elevated CO2 exacerbates the risk of methylmercury exposure in consuming aquatic products: Evidence from a complex paddy wetland ecosystem

Elevated CO2 levels and methylmercury (MeHg) pollution are important environmental issues faced across the globe. However, the impact of elevated CO2 on MeHg production and its biological utilization remains to be fully understood, particularly in realistic complex systems with biotic interactions. Here, a complete paddy wetland microcosm, namely, the rice-fish-snail co-culture system, was constructed to investigate the impacts of elevated CO2 (600 ppm) on MeHg formation, bioaccumulation, and possible health risks, in multiple environmental and biological media. The results revealed that elevated CO2 significantly increased MeHg concentrations in the overlying water, periphyton, snails and fish, by 135.5%, 66.9%, 45.5%, and 52.1%, respectively. A high MeHg concentration in periphyton, the main diet of snails and fish, was the key factor influencing the enhanced MeHg in aquatic products. Furthermore, elevated CO2 alleviated the carbon limitation in the overlying water and proliferated green algae, with subsequent changes in physico-chemical properties and nutrient concentrations in the overlying water. More algal-derived organic matter promoted an enriched abundance of Archaea-hgcA and Deltaproteobacteria-hgcA genes. This consequently increased the MeHg in the overlying water and food chain. However, MeHg concentrations in rice and soil did not increase under elevated CO2, nor did hgcA gene abundance in soil. The results reveal that elevated CO2 exacerbated the risk of MeHg intake from aquatic products in paddy wetland, indicating an intensified MeHg threat under future elevated CO2 levels.

Limitations of Plant Stress Tolerance upon Heat and CO2 Exposure in Black Poplar: Assessment of Photosynthetic Traits and Stress Volatile Emissions.

Volatile organic compounds (VOCs) emitted by plants may help in understanding the status of a plant's physiology and its coping with mild to severe stress. Future climatic projections reveal that shifts in temperature and CO2 availability will occur, and plants may incur the uncoupling of carbon assimilation and synthesis of key molecules. This study explores the patterns of emissions of key VOCs (isoprene, methanol, acetaldehyde, and acetic acid) emitted by poplar leaves (more than 350) under a combined gradient of temperature (12-42 °C) and air CO2 concentration (400-1500 ppm), along with measurements of photosynthetic rates and stomatal conductance. Isoprene emission exhibited a rise with temperature and CO2 availability, peaking at 39 °C, the temperature at which methanol emission started to peak, illustrating the limit of stress tolerance to severe damage. Isoprene emission was uncoupled from the photosynthesis rate, indicating a shift from the carbon source for isoprene synthesis, while assimilation was decreased. Methanol and acetaldehyde emissions were correlated with stomatal conductance and peaked at 25 °C and 1200 ppm CO2. Acetic acid emissions lacked a clear correlation with stomatal conductance and the emission pattern of its precursor acetaldehyde. This study offers crucial insights into the limitations of photosynthetic carbon and stress tolerance.

Mixed Chinese Fir Plantations Alter the C, N, and P Resource Limitations Influencing Microbial Metabolism in Soil Aggregates

Assessing the limitations of microbial metabolic resources is crucial for understanding plantation soil quality and enhancing fertility management. However, the variation of microbial resource limitations at the aggregate level in response to changes in stands remains unclear. This research explores carbon (C), nitrogen (N), and phosphorus (P) limitations affecting microbial metabolism in bulk soils and aggregates in two mixed and one pure Chinese fir stands in subtropical China, analyzing resource limitations concerning soil carbon, nutrients, and microbial indicators. The results revealed that microbes in all aggregates of the pure stands and in the micro aggregates (&lt;0.25 mm) of the three stands were relatively limited by C and P. In contrast, microbial metabolism was more N-limited in macroaggregates (&gt;2 mm) and small aggregates (2–0.25 mm) in the mixed stands. Additionally, in the mixed stands the proportion of soil macroaggregates increased, and that of micro aggregates decreased, resulting in a shift from C and P limitation to N limitation for bulk soil microbial metabolism. Redundancy analysis identified soil aggregate organic carbon and nutrient content as the main factors affecting microbial resource limitation, rather than their stoichiometric ratios. Pathway analysis further confirmed that soil nutrients and their stoichiometric ratios indirectly influenced soil microbe resource limitation by regulating microbial biomass, microbial respiration, and extracellular enzyme activities. Thus, the impact of mixed plantations on soil nutrients and microbial activity at the aggregate level may be crucial for maintaining land fertility and achieving sustainability.

Inorganic carbon limitation decreases ammonium removal and N2O production in the algae-nitrifying bacteria symbiosis system

Ammonium removal by a symbiosis system of algae (Chlorella vulgaris) and nitrifying bacteria was evaluated in a long-term photo-sequencing batch reactor under varying influent inorganic carbon (IC) concentrations (15, 10, 5 and 2.5 mmol L−1) and different nitrogen loading rate (NLR) conditions (270 and 540 mg-N L−1 d−1). The IC/N ratios provided were 2.33, 1.56, 0.78 and 0.39, respectively, for an influent NH4+-N concentration of 90 mg-N L−1 (6.43 mmol L−1). The results confirmed that both ammonium removal and N2O production were positively related with IC concentration. Satisfactory ammonium removal efficiencies (>98 %) and rates (29–34 mg-N gVSS−1 h−1) were achieved regardless of NLR levels under sufficient IC of 10 and 15 mmol L−1, while insufficient IC at 2.5 mmol L−1 led to the lowest ammonium removal rates of 0 mg-N gVSS−1 h−1. The ammonia oxidation process by ammonia oxidizing bacteria (AOB) played a predominant role over the algae assimilation process in ammonium removal. Long-time IC deficiency also resulted in the decrease in biomass and pigments of algae and nitrifying bacteria. IC limitation led to the decreasing N2O production, probably due to its negative effect on ammonia oxidation by AOB. The optimal IC concentration was determined to be 10 mmol L−1 (i.e., IC/N of 1.56, alkalinity of 500 mg CaCO3 L−1) in the algae-bacteria symbiosis reactor, corresponding to higher ammonia oxidation rate of ∼41 mg-N gVSS−1 h−1 and lower N2O emission factor of 0.13 %. This suggests regulating IC concentrations to achieve high ammonium removal and low carbon emission simultaneously in the algae-bacteria symbiosis wastewater treatment process.

Demand response for residential building heating: Effective Monte Carlo Tree Search control based on physics-informed neural networks

To reduce global carbon emissions and limit climate change, controlling energy consumption in buildings is an important piece of the puzzle. Here, we specifically focus on using a demand response (DR) algorithm to limit the energy consumption of a residential building's heating system while respecting user's thermal comfort. In that domain, Reinforcement learning (RL) methods have been shown to be quite effective. One such RL method is Monte Carlo Tree Search (MCTS), which has achieved impressive success in playing board games (go, chess). A particular advantage of MCTS is that its decision tree structure naturally allows to integrate exogenous constraints (e.g., by trimming branches that violate them), while conventional RL solutions need more elaborate techniques (e.g., indirectly by adding penalties in the cost/reward function, or through a backup controller that corrects constraint-violating actions). The main aim of this paper is to study the adoption of MCTS for building control, since this (to the best of our knowledge) has remained largely unexplored. A specific property of MCTS is that it needs a simulator component that can predict subsequent system states, based on actions taken. A straightforward data-driven solution is to use black-box neural networks (NNs). We will however extend a Physics-informed Neural Network (PiNN) model to deliver multi-timestep predictions, and show the benefit it offers in terms of lower prediction errors (−32% MAE) as well as better MCTS performance (−4% energy cost, +7% thermal comfort) compared to a black-box NN. A second contribution will be to extend a vanilla MCTS version to adopt the ideas applied in AlphaZero (i.e., using learned prior and value functions and an action selection heuristic) to obtain lower computational costs while maintaining control performance.

Pre-silking water deficit in maize induced kernel loss through impaired silk growth and ovary carbohydrate dynamics.

Both carbon limitation and developmentally driven kernel failure occur in the apical region of maize (Zea mays L.) ears. Failed kernel development in the basal and middle regions of the ear often is neglected because their spaces usually are occupied by adjacent ovaries at harvest. We tested the spatial distribution of kernel losses and potential underlying reasons, from perspectives of silk elongation and carbohydrate dynamics, when maize experienced water deficit during silk elongation. Kernel loss was distributed along the length of the ear regardless of water availability, with the highest kernel set in the middle region and a gradual reduction toward the apical and basal ends. Water deficit limited silk elongation in a manner inverse to the temporal pattern of silk initiation, more strongly in the apical and basal regions of the ear than in the middle region. The limited recovery of silk elongation, especially at the apical and basal regions following rescue irrigation was probably due to water potentials below the threshold for elongation and lower growth rates of the associated ovaries. While sugar concentrations increased or did not respond to water deficit in ovaries and silks, the calculated sugar flux into the developing ovaries was impaired and diverged among ovaries at different positions under water deficit. Water deficit resulted in 58% kernel loss, 68% of which was attributable to arrested silks within husks caused by lower water potentials and 32% to ovaries with emerged silks possibly due to impaired carbohydrate metabolism.

Long‐term straw mulching alleviates microbial nutrient limitations and increases carbon‐use efficiency within aggregates

AbstractLong‐term straw mulching was known to change soil nutrient content, aggregate distribution and extracellular enzyme activities. However, the impact of long‐term straw mulching on microbial nutrient limitations and carbon‐use efficiency (CUEst) within aggregates remains unclear. To fill the gap, we conducted a 10‐year field experiment in a semi‐arid region and used an ecoenzymatic stoichiometry model to quantify microbial resource limitations in soil aggregates under long‐term mulching. We studied the effects of two mulching measures (plastic film mulching [FM] and straw mulching [SM], with no mulching as the control [CK]) on the nutrient content and limitations within aggregates. The results show that compared with FM, SM increased the proportion of aggregates to larger &gt;2 mm and decreased the proportion of aggregates in the 2–0.25 mm classes. Additionally, FM resulted in carbon (C) and phosphorus (P) limitations in the soil, particularly in the &gt;2 mm class, while SM alleviated these constraints. This effect was primarily attributed to the increase in soil organic carbon (SOC) and microbial biomass carbon content (Cm), especially the enhanced carbon content associated with larger aggregates (&gt;2 mm) and the increased activities of carbon–nitrogen (C–N)‐acquiring enzymes. SM also resulted in high CUEst by influencing microbial P limitation. Random forest analysis indicates that soil abiotic factors, particularly SOC and total nitrogen (TN), were the main drivers of microbial resource limitations within the aggregates. These findings suggest that the mulching material determines the development of soil aggregates and resource allocation within these aggregates. Thus, the study provides valuable insights for formulating effective carbon management strategies in semi‐arid regions.

Size-dependent dynamics of the internal carbon pool drive isotopic vital effects in calcifying phytoplankton

Isotopic offsets in biogenic calcite from equilibrium values can provide unique insights into the physiology and mechanisms of carbon regulation in calcifying phytoplankton. This study examines the impact of varying CO2 (controlled via pH) on five coccolithophore species chosen for varied cell sizes, physiology, and calcification. The study investigates isotopic offsets in coccolith calcite and organic matter, in relation to carbon demand and supply (µ/CO2). Species-specific CO2 and/or pH optima for growth (µopt) were derived from variations in growth rates with varying CO2 concentrations. Growth rates for all species declined with rising CO2 (decreasing pH) due to H+-driven inhibition. C. braarudii and C. leptoporus exhibited µopt at high CO2 concentrations (suggesting high carbon-demand) and limited growth under low CO2 (high pH) suggesting carbon limitation. Under low CO2 supply, when growth rates were CO2-limited, both species exhibited coincident isotopic depletion in calcite and organic matter as a consequence of CO2 diffusion into the cell that experienced no equilibration as a result of a highly depleted internal carbon pool. In these two species, isotopic values in calcite remained unaffected by growth rates and CO2 concentration (µ/CO2) when CO2 was sufficient for optimal growth. G. huxleyi and G. oceanica displayed optima for growth (µopt) at low CO2 concentrations and showed no growth limitation under low CO2 (indicating low carbon-demand). Both species experienced depleted (negative) vital effects caused by an excess of CO2 diffusioninto the small internal carbon pool of the cell when diffusive carbon supply outpaced low demand (low µ/CO2). Enriched (positive) vital effects were observed under low carbon supply and high demand, likely due to increased HCO3– uptake and diffusive CO2 loss from the intracellular carbon pooldue to a lower intracellular pH than the seawater pH. C. carterae exhibited a µopt at intermediate CO2 concentrations and isotopically equilibrated intracellular carbon pool such that δ13C values in calcite and organic matter suggested a shared carbon pool. This study illustrates that pH and CO2 driven vital effects and fractionation into organic matter indicate the residence time for carbon in the intracellular carbon pool, where the size of the pool is proportional to cell size. Due to the increased buffering afforded by a larger pool, C. leptoporus and C. carterae may have elevated intracellular pH which minimises CO2 leakage, whereas vital effects in G. huxleyi and G. oceanica are caused by CO2 diffusion in or out of their small internal carbon pool with limited buffering capacity owing to its small size.

Carbohydrate distribution via SWEET17 is critical for Arabidopsis inflorescence branching under drought.

Sugars Will Eventually be Exported Transporters (SWEETs) are the most recently discovered family of plant sugar transporters. By acting as uniporters, SWEETs facilitate the diffusion of sugars across cell membranes and play an important role in various physiological processes such as abiotic stress adaptation. AtSWEET17, a vacuolar fructose facilitator, was shown to be involved in the modulation of the root system during drought. In addition, previous studies have shown that overexpression of an apple homolog leads to increased drought tolerance in tomato plants. Therefore, SWEET17 might be a molecular element involved in plant responses to drought. However, the role and function of SWEET17 in above-ground tissues of Arabidopsis under drought stress remain elusive. By combining gene expression analysis and stem architecture with the sugar profiles of different above-ground tissues, we uncovered a putative role for SWEET17 in carbohydrate supply and thus cauline branch elongation, especially during periods of carbon limitation, as occurs under drought stress. Thus, SWEET17 seems to be involved in maintaining efficient plant reproduction under drought stress conditions.