Carbon electrode material is crucial for the development of electric double-layered supercapacitor in clean energy storage and rechargeable aspects. Although lignin consists the promising biomass based carbon resource for containing higher carbon atom ratio than 60 %, it is still the difficult challenge to precisely tailoring the porous structure characteristics and surface property to facilitate the electrolyte penetration and rapid ion transportation. Herein, the lignin nanotubes (LNT) were successfully synthesized in a convenient molecular self-assembly way, which were subsequently carbonized and activated, with introduction of melamine as nitrogen doping agent, into hetero-atom doped lignin carbon nanotubes (LCNT) as electrode material for supercapacitor. The resultant LCNT exhibit excellent pore structure, and high degree of graphitization. At a current density of 0.5 A/g, the as high specific capacitance as 391.4 F/g was achieved. Furthermore, under symmetric double-layered capacitor electrode systems, the as prepared N, S co-doped LCNT electrode demonstrated a specific capacitance of 28.6 F/g at a high current density of 20 A/g, which presented a practically applicable energy storage efficiency. It has convincingly demonstrate the substantial potential of LCNT as biomass derived carbon materials for electrochemical energy storage devices, positioning them as a promising and competitive candidate for electrode materials.