The combination of a consecutive double capillary column gas chromatographic system (Deans type) with a fully automatic injection device was developed to determine quantitatively the fatty acid fraction of serum extracts, without prior removal of the other lipids. A major difficulty arose through ghosting (memory), via reaction of methylating reagents with lipid deposits, mainly in the injection port. Use of diazomethane circumvented this, as the reagent was easily removed prior to analysis. The combination methyl iodide—potassium carbonate, convenient handling of which requires coinjection of methyl iodide, proved to be less than completely dependable. Dimethylformamide dimethylacetal is completely out of the question as a coinjectant. Lipid deposits in the injection port produced peak area drifts which could, however, be counteracted. The apparatus is capable of analyzing samples completely unattended for at least 20 hours (80 samples). It has been operated non-stop, day and night, for between 4 and 7 days with occasional reloading and servicing.