Broad Geographic Range Research Articles

Fine-scale species delimitation: speciation in process and periodic patterns in nudibranch diversity.

Using the nudibranch genus Amphorina as a model, ongoing speciation is demonstrated, as well as how periodic-like patterns in colouration can be included in an integrated method of fine-scale species delimitation. By combining several methods, including BPP analysis and the study of molecular, morphological, and ecological data from a large number of specimens within a broad geographic range from northern Europe to the Mediterranean, five species are recognised within the genus Amphorina, reviewed here for the first time. Two new species from the southwestern coast of Sweden are described, A. viriolasp. nov. and A. andrasp. nov. Evidence is provided of a recent speciation process between the two closely related, yet separate, species which inhabit the same geographic localities but demonstrate strict water depth differentiation, with one species inhabiting the shallow brackish top layer above the halocline and the other species inhabiting the underlying saltier water. The results presented here are of relevance for currently debated issues such as conservation in relation to speciation, fine species delimitation, and integration of molecular, morphological and ecological information in biodiversity studies. The periodic approach to biological taxonomy has considerable practical potential for various organismal groups.

Multiple evolutionary origins of sequestrate species in the agaricoid genus Chlorophyllum

ABSTRACTChlorophyllum accommodates lamellate agaricoid species as well as sequestrate angiocarpic taxa, which do not form a monophyletic lineage within the genus. To clarify phylogenetic affinities and delimit species boundaries among sequestrate representatives of the genus, we analyzed historical and contemporary material from a broad geographic range, encompassing North America, southern Africa, eastern Asia, the Greek and Iberian peninsulas, and the Mediterranean islands of Cyprus and Lesvos. Six sequestrate lineages of Chlorophyllum were identified, which appear to have evolved in at least three independent gasteromycetation events. Multigene analysis of the nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS) and portions of the nuc 28S rDNA (28S), RNA polymerase II second largest subunit (rpb2), and translation elongation factor 1-α (tef1) genes revealed the presence of a previously undescribed species, introduced here as Chlorophyllum levantinum, sp. nov. Its sister species C. lusitanicum, previously known only from Spain, is shown to have a wider distribution throughout the Mediterranean basin. A South African collection of Secotium gueinzii, a poorly known taxon described in 1840 and seldom appearing in literature since, was also shown to nest within Chlorophyllum. An epitype for this rare species is designated, Secotium becomes a priority synonym of Chlorophyllum, and nomenclatural implications are discussed. The phylogenetic placement of C. arizonicum is confirmed after successful sequencing of the century-old holotype and an undescribed sister lineage of this species detected. Emended descriptions of sections Chlorophyllum, Endoptychorum, and Sphaerospororum are provided to reflect current results, along with updated descriptions and extensive imagery for all known sequestrate taxa of Chlorophyllum.

Was Equus cedralensis a Non-Stilt Legged Horse? Taxonomical Implications for the Mexican Pleistocene Horses

Equus cedralensis is a small-sized Pleistocene Mexican horse species that has a very similar occlusal pattern and size to those of Haringtonhippus francisci (= Equus francisci ), but it can be distinguished from the latter because it is a not stilt-legged equid. We performed multivariate and univariate analyses of metatarsals of stilt- and stout-legged equid species to determine if E. cedralensis was a non-stilt legged horse. Our results indicated that E. cedralensis is a stilt-legged horse and as such, it should be considered a junior synonym of Haringtonhippus francisci , because there is not any other valid autapomorphy that allows it to be recognized. H. francisci had a very broad geographic range during the Pleistocene in North America, from Alaska to southern Mexico.

Investigating population genetics of invasive rainbow smelt in the Great Lakes Region

Increasing our understanding of invasive species is important because of the negative impacts they can have on the economies and ecosystems of invaded regions. There is growing interest in how environmental variability (e.g. temperature) and stochastic invasion events (e.g. founder effects) affect the genetic composition of populations of invasive species. Rainbow smelt (Osmerus mordax) are a cold-water, planktivorous fish that spread into the Great Lakes basin in the early 1900s. We performed genetic analyses using microsatellites (N = 10) to investigate the influence stochastic invasion events have had on the genetic composition of invasive rainbow smelt populations across a broad geographic range. Genetic analyses were conducted on rainbow smelt populations (N = 30/population) from Lake Ontario, Lake Michigan, Lake Superior, and four inland lakes in Northern Wisconsin. Populations from the Great Lakes were generally less differentiated than inland populations. Additionally, we found evidence of a significant bottleneck in two inland populations and evidence for two distinct genetic strains of rainbow smelt in Lake Ontario. We also performed genetic analyses using microsatellites to determine if a thermally-induced extreme mortality event had an effect on a population of rainbow smelt and found that there was no measurable genetic effect on the population. Overall, this study provides evidence that the genetic structure and diversity of introduced populations can vary significantly, and are likely influenced by factors such as the frequency and magnitude of introductions. Also the resiliency of an invasive species can be high despite a history of bottlenecks and low genetic diversity.

Climate policy co-benefits: a review

ABSTRACT Concern over mitigation costs impedes the adoption of the climate policies needed to achieve agreed global warming targets. While costs are important to consider, so are benefits. However, the evidence for climate policy co-benefits, that is, the benefits in addition to avoided climate change costs, is commonly overlooked in policy-making. In many areas, the research is limited and not comprehensively synthesised. This article counters that problem and reviews 239 peer-reviewed articles, selected from 1,749 hits from a literature search covering ‘co-benefits’ and related terms. Aiming to aid policy-makers and to identify research gaps, we structure, describe, analyse and synthesize the rapidly expanding knowledge on climate policy co-benefits. Improved air quality is the co-benefit category dominating the literature, but studies covering a broad geographic range also focus on diet, physical activity, soil and water quality, biodiversity, economic performance, and energy security. In these areas, co-benefits are shown to be of substantial economic value, regarding air quality often of the same order of magnitude as mitigation costs, in some instances even larger. However, the share of studies quantifying or monetizing co-benefits is limited, and the empirical evidence is small, in particular for areas besides air quality and health. Furthermore, the knowledge is seldom used in policy-making, meaning that decision-making is often biased and overly concerned with costs, leading to suboptimal climate policies and goal failures. Evidently, more research is needed, as well as improved decision-making. Understanding and acting on climate policy co-benefits can promote policies that better mitigate climate change and improve overall welfare. Key policy insights Climate policy co-benefits in well-researched fields such as air quality and health are large, often equalling or exceeding mitigation costs. Despite their significance, co-benefits are seldom considered in decision-making, leading to biased policies and goal failures. In several areas, such as diet and energy security, co-benefits are sparsely researched, but emerging evidence points to high values. More research is needed, including on how to describe the total value of different co-benefits. Improved processes, documentation requirements and criteria in decision-making are needed, in order to ensure that political decision-makers consider co-benefits.

Molecular genetic variability of Juglans regia L. and Juglans sigillata D. as revealed by fluorescent amplified-fragment length polymorphism

Juglans regia L. and J. sigillata D. have a long cultivation history in China. With the purpose of detecting interspecific and intraspecific genetic variation, 35 clonal cultivars of J. regia, J. sigillata, J. sigillata×J. regia and J. hopeiensis Hu. (J. mandshurica Maxim. ×J. regia) were selected from a broad geographic range and applied in amplified-fragment length polymorphism (AFLP) analysis. Clear-cut AFLP profiles were produced using 9 EcoR I/Mse I primer combinations. As for J. regia, J. sigillata and their hybrids, the percentages of polymorphic bands (PPBs) averaged 93.86%, 93.94% and 60.46%; the observed number of alleles (Na) averaged 1.5370, 1.6389 and 1.2593; the effective number of alleles (Ne) averaged 1.2582, 1.2543 and 1.1646; Nei's gene diversity (H) scored 0.1560, 0.1556 and 0.0951; Shannon’s information index (I) averaged 0.2402, 0.2459 and 0.1414, respectively. These results implied a moderate level of genetic diversity within the investigated species. The total gene diversity (Ht = 0.1596) can be distributed into intra- (Hs = 0.1356) and inter- (Dst = 0.0240) species gene diversity. The proportion of the distributed genetic diversity among populations (Gst ) was 0.1505, indicating that only 15% of the total gene diversity was attributed to differences between species. The factorial correspondence analysis (FCA) and unweighted pair-group method of arithmetic averages (UPGMA) analysis revealed a close genetic distance between these two species.

Drivers of habitat partitioning among three Quercus species along a hydrologic gradient.

A critical process that allows multiple, similar species to coexist in an ecological community is their ability to partition local habitat gradients. The mechanisms that underlie this separation at local scales may include niche differences associated with their biogeographic history, differences in ecological function associated with the degree of shared ancestry and trait-based performance differences, which may be related to spatial or temporal variation in habitat. In this study we measured traits related to water-use, growth and stress tolerance in mature trees and seedlings of three oak species (Quercus alba L., Quercus falcata Michx. and Quercus palustris Münchh). which co-occur in temperate forests across the eastern USA but tend to be found in contrasting hydrologic environments. The three species showed significant differences in their local distributions along a hydrologic gradient. We tested three possible mechanisms that influence their contrasting local environmental distributions and promote their long-term co-existence: (i) differences in their climatic distributions across a broad geographic range, (ii) differences in functional traits related to water use, drought tolerance and growth and (iii) contrasting responses to temporal variation in water availability. We identified key differences between the species in both their range-wide climatic distributions (especially aridity index and mean annual temperature) and physiological traits in mature trees and seedlings, including daily water loss, hydraulic conductance, stress responses, growth rate and biomass allocation. Taken together, these differences explain the habitat partitioning that allows three closely related species to co-occur locally.

Birch bark tar in early Medieval England – Continuity of tradition or technological revival?

Birch bark tar is a manufactured product with a history of production and use that reaches back to the Palaeolithic. Its sticky, water resistant and biocidal properties mean that it has a wide range of applications, for example, as a multipurpose adhesive, sealant and in medicine. Archaeological evidence for birch bark tar in the old world covers a broad geographic range from the UK to the Baltic and from the Mediterranean to Scandinavia. In the east and north of this range there is continuity of use to modern times but in western Europe and the British Isles the use of birch bark tar has generally been viewed as limited to prehistory, with gradual displacement by pine tars during the Roman period.Here, we report new finds of birch bark tar from two early Medieval sites in the east of England. Analysis by HT-GC/MS to identify the tars also revealed fatty material, possibly added to modify the tar. The different contexts of the finds point to diverse applications of the material: in one case perhaps a medicine, the other associated with a ceramic container, possibly used for processing the tar. The results present the first identification of birch bark tar from early Medieval archaeological contexts in the UK. Together they indicate a later period of use for birch bark tar in the UK than has been previously observed and raise the question of whether this indicates evidence of a longer continuity of use than hitherto recognised or a later reintroduction of the technology in the Medieval period, in which case the similarities between the find sites, both early Anglo-Saxon cemeteries with comparable assemblages of grave goods, may be significant.

Fatty acid profiles of lake trout reveal the importance of lipid content for interpreting trophic relationships within and across lakes

Fatty acid profiles increasingly are being used to quantify foraging patterns of consumers, but the associated interpretation may vary with the tissue type and its lipid content. For salmonids, lipid deposits can be found in both dorsal and ventral (“belly flap”) areas of muscle tissues. However, it is uncertain whether belly flap and dorsal muscle fatty acid profiles are similar in natural populations of fish. We examined how fatty acid profiles of belly flap compared to those of dorsal muscle and the consequent impacts on dietary inferences. Fatty acid profiles were derived from lake trout (Salvelinus namaycush) caught in five North American lakes: Champlain, Flathead, Michigan, Ontario, and Swan. Fatty acid profiles were most similar between tissues when lipid content of muscle was > ~10%, the threshold below which similarities decreased and thus increasingly affected dietary inference. Some fatty acids commonly used as trophic indicators preferentially accrued in one tissue over the other depending on lipid content of the tissues. Regardless of tissue type, fatty acid profiles were specific to each lake indicating that food web structures were distinctive over a broad geographic range. Fatty acid profiles of tissues from lakes Michigan and Ontario were highly similar, so were those from Flathead and Swan lakes, whereas those from Lake Champlain were distinct, having comparatively high proportions of 18:1n-9. We conclude that lipid storage areas like belly flaps likely provide a more accurate signal than muscle when using fatty acids to investigate dietary patterns, particularly when muscle lipid levels are low.

Migrations and movements of Atlantic tarpon revealed by two decades of satellite tagging

AbstractUnderstanding large‐scale migratory behaviours, local movement patterns and population connectivity are critical to determining the natural processes and anthropogenic stressors that influence population dynamics and for developing effective conservation plans. Atlantic tarpon occur over a broad geographic range in the Atlantic Ocean where they support valuable subsistence, commercial and recreational fisheries. From 2001 through 2018, we deployed 292 satellite telemetry tags on Atlantic tarpon in coastal waters off three continents to document: (a) seasonal migrations and regional population connectivity; (b) freshwater and estuarine habitat utilization; (c) spawning locations; and (d) shark predation across the south‐eastern United States, Gulf of Mexico and northern Caribbean Sea. These results showed that some mature tarpon make long seasonal migrations over thousands of kilometres crossing state and national jurisdictional borders. Others showed more local movements and habitat use. The tag data also revealed potential spawning locations consistent with those inferred in other studies from observations of early life stage tarpon leptocephalus larvae. Our analyses indicated that shark predation mortality on released tarpon is higher than previously estimated, especially at ocean passes, river mouths and inlets to bays. To date, there has been no formal stock assessment of Atlantic tarpon, and regional fishery management plans do not exist. Our findings will provide critical input to these important efforts and assist the multinational community in the development of a stock‐wide management information system to support informed decision‐making for sustaining Atlantic tarpon fisheries.

Modern pollen rain, vegetation and climate along elevation gradients in the upper-middle Yellow River: numerical approaches for quantitative environmental reconstruction

A total of 245 modern pollen samples available in the East Asian Pollen Database and our unpublished pollen data (n = 204 and 41, respectively) were compiled to determine the correlation between modern pollen rain and vegetation in the watershed regions along the upper and middle Yellow River (UMYR) using principle component analysis (PCA). Despite considerable geographical differences and an uneven spatial vegetation distribution, pollen assemblages could differentiate major vegetation and climate zones. The PCA result reveals a high correlation between pollen taxa and key environmental factors, suggesting the high potential of this database for quantitative climate reconstruction. After screening, 199 samples were finally used to quantitatively reconstruct climate parameters with three methods namely, the weighted averaging partial least squares (WA-PLS) method, locally weighed weighted averaging (LWWA) method, and modern analogue technique (MAT).The comparison of multiple reconstructions indicates that WA-PLS provides quite accurate climate reconstructions from limited pollen data, whereas LWWA and MAT appear more suitable for large pollen datasets associated with a broad geographic range. We also discovered that the selection of sub-divided watershed areas yielded significant reduction in prediction errors and, in turn, improved accuracy of the quantitative climate reconstruction. The statistical results indicate that the transfer functions are reliable for both climate variables and elevation that is controlled mainly by the lapse rate of the altitudinal temperature. The current study provides evidence that modern pollen data in the UMYR can be used as a reliable reference dataset for pollen-based quantitative climate reconstructions.

Identifying genetic lineages through shape: An example in a cosmopolitan marine turtle species using geometric morphometrics.

The green turtle (Chelonia mydas) is a globally distributed marine species whose evolutionary history has been molded by geological events and oceanographic and climate changes. Divergence between Atlantic and Pacific clades has been associated with the uplift of the Panama Isthmus, and inside the Pacific region, a biogeographic barrier located west of Hawaii has restricted the gene flow between Central/Eastern and Western Pacific populations. We investigated the carapace shape of C. mydas from individuals of Atlantic, Eastern Pacific, and Western Pacific genetic lineages using geometric morphometrics to evaluate congruence between external morphology and species’ phylogeography. Furthermore, we assessed the variation of carapace shape according to foraging grounds. Three morphologically distinctive groups were observed which aligned with predictions based on the species’ lineages, suggesting a substantial genetic influence on carapace shape. Based on the relationship between this trait and genetic lineages, we propose the existence of at least three distinct morphotypes of C. mydas. Well-defined groups in some foraging grounds (Galapagos, Costa Rica and New Zealand) may suggest that ecological or environmental conditions in these sites could also be influencing carapace shape in C. mydas. Geometric morphometrics is a suitable tool to differentiate genetic lineages in this cosmopolitan marine species. Consequently, this study opens new possibilities to explore and test ecological and evolutionary hypotheses in species with wide morphological variation and broad geographic distribution range.

Broad geographic sampling and DNA barcoding do not support thepresence of Helobdella stagnalis (Linnaeus, 1758) (Clitellata: Glossiphoniidae) in North America.

The description of Helobdella stagnalis (Linnaeus, 1758) has emphasized the presence of a nuchal, chitinous scute located on the dorsal surface in the first third of the body as the diagnostic character for the species. Historically, identifications of species of Helobdella have relied heavily on this character and, as a result, Helobdella stagnalis has been reported from an inordinately broad geographic range, including Europe, Asia, Africa, North America, and South America. In addition to a few earlier investigations, a recent analysis showed that great genetic distances (orders of magnitude greater than previous estimations of intraspecific divergence in leeches) are present between scute-bearing specimens identified as H. stagnalis from Europe and North America, implying that H. stagnalis does not occur in North America. The present study expands the geographic boundaries of taxon sampling for both European and North American taxa, and re-examines the phylogenetic relationships and cytochrome c oxidase subunit I (COI) variation within scute-bearing species of the genus Helobdella. Our analyses include specimens putatively identified as "Helobdella stagnalis" from Sweden, Norway, Iceland, England, France, Italy, Slovenia, Turkey, Russia, and Iran, as well as numerous localities covering Canada and the USA. Our results corroborate previous studies in that European and west Asian specimens form a clade, including the neotype, which is separate from North American taxa. To alleviate future taxonomic confusion, we redescribe H. stagnalis and designate a neotype from the inferred type locality. The designation of a neotype stabilizes the taxonomy of scute-bearing leeches of the genus Helobdella and enables us to definitively correct erroneous identifications reported in previous studies. We also note that at least four lineages of scute-bearing, North American species of Helobdella lack formal descriptions.

Understanding Workflow and Personal Protective Equipment Challenges Across Different Healthcare Personnel Roles.

Hospitals use standard and transmission-based precautions, including personal protective equipment (PPE), to prevent the spread of infectious organisms. However, little attention has been paid to the potentially unique challenges of various healthcare personnel (HCP) in following precaution practices. From September through December 2016, 5 physicians, 5 nurses, and 4 physical therapists were shadowed for 1 hour 30 minutes to 3 hours 15 minutes at an academic medical center. Observers documented activities using unstructured field notes. Focus groups were conducted to better understand HCP perspectives about precautions and PPE-related challenges. Data were analyzed by comparing workflow and challenges (observed and stated) in precaution practices across HCP roles. Precaution patients were interspersed throughout physician rounds, which covered a broad geographic range throughout the hospital. Patient encounters were generally brief, and appropriate use of gowns and cleaning of personal stethoscopes varied among observed physicians. Nurses were unit based and frequently entered/exited rooms. Frustration with donning/doffing was especially apparent when needing supplies while in a precaution room, which nurses acknowledged was a time when practice lapses could occur. The observed physical therapists worked in one geographic location, spent extended periods of time with patients, and noted that given their close physical contact with patients, gowns do not fully protect them. Movement patterns, time with patients, care activities, and equipment use varied across HCP, leading to a diverse set of challenges in following precaution practices and PPE use. Attention to these differences among HCP is important for understanding and developing effective strategies to prevent the potential spread of infectious organisms.

Geography is more important than host plant use for the population genetic structure of a generalist insect herbivore.

Population divergence can occur due to mechanisms associated with geographic isolation and/or due to selection associated with different ecological niches. Much of the evidence for selection-driven speciation has come from studies of specialist insect herbivores that use different host plant species; however, the influence of host plant use on population divergence of generalist herbivores remains poorly understood. We tested how diet breadth, host plant species and geographic distance influence population divergence of the fall webworm (Hyphantria cunea; FW). FW is a broadly distributed, extreme generalist herbivore consisting of two morphotypes that have been argued to represent two different species: black-headed and red-headed. We characterized the differentiation of FW populations at two geographic scales. We first analysed the influence of host plant and geographic distance on genetic divergence across a broad continental scale for both colour types. We further analysed the influence of host plant, diet breadth and geographic distance on divergence at a finer geographic scale focusing on red-headed FW in Colorado. We found clear genetic and morphological distinction between red- and black-headed FW, and Colorado FW formed a genetic cluster distinct from other locations. Although both geographic distance and host plant use were correlated with genetic distance, geographic distance accounted for up to 3× more variation in genetic distance than did host plant use. As a rare study investigating the genetic structure of a widespread generalist herbivore over a broad geographic range (up to 3,000km), our study supports a strong role for geographic isolation in divergence in this system.

Genetic variation within the genus Macropostrongyloides (Nematoda: Strongyloidea) from Australian macropodid and vombatid marsupials.

The genetic variation and taxonomic status of the four morphologically-defined species of Macropostrongyloides in Australian macropodid and vombatid marsupials were examined using sequence data of the ITS+ region (=first and second internal transcribed spacers, and the 5.8S rRNA gene) of the nuclear ribosomal DNA. The results of the phylogenetic analyses revealed that Ma. baylisi was a species complex consisting of four genetically distinct groups, some of which are host-specific. In addition, Ma. lasiorhini in the common wombat (Vombatus ursinus) did not form a monophyletic clade with Ma. lasiorhini from the southern hairy-nosed wombat (Lasiorhinus latifrons), suggesting the possibility of cryptic (genetically distinct but morphologically similar) species. There was also some genetic divergence between Ma. dissimilis in swamp wallabies (Wallabia bicolor) from different geographical regions. In contrast, there was no genetic divergence among specimens of Ma. yamagutii across its broad geographical range or between host species (i.e. Macropus fuliginosus and M. giganteus). Macropostrongyloides dissimilis represented the sister taxon to Ma. baylisi, Ma. yamagutii and Ma. lasiorhini. Further morphological and molecular studies are required to assess the species complex of Ma. baylisi.

Sudden Aspen Decline: A Review of Pattern and Process in a Changing Climate

The American quaking aspen (Populus tremuloides Michx.) and its close relative, the Eurasian quaking aspen (Populus tremula L.), cover a realm that is perhaps the most expansive of all tree species in the world. In North America, sudden aspen decline (SAD) is a growing concern that marks the rapid decline of quaking aspen trees leading to mortality at the stand and landscape scale. Research suggests that drought and water stress are the primary causes of SAD. Predisposing factors (age, structure, and landscape position), as well as associated stressors (i.e., pests and pathogens), have been linked to mortality in affected stands. The conflation of multiple interacting factors across the aspen’s broad geographic range in North America has produced significant debate over the classification of SAD as a disease and the proper management of affected stands. Interestingly, no such effects have been reported for the Eurasian aspen. We here review and synthesize the growing body of literature for North America and suggest that SAD is a novel decline disease resulting from multiple inciting and interacting factors related to climate, land-use history, and successional dynamics. We suggest that the range of aspen observed at the onset of the 21st Century was bolstered by a wet period in western North America that coincided with widespread regional cutting and clearing of late-successional forests for timber and grazing. No comparable land-use history, successional status, or age-class structure is apparent or linked for Eurasian forests. Eurasian aspen is either absent or young in managed forests, or old and decadent in parks in Fenno-Scandinavia, or it grows more intimately with a more diverse mixture of tree species that have arisen from a longer period of frequent timber cutting in Russia. Based on these insights we provide recommendations for practical management techniques that can promote stand resilience and recovery across a range of stand conditions in North America. Managers should attempt to identify SAD-prone stands using the presence of predisposing conditions and focus treatments such as coppice or prescribed fire on stands with suitable topographies, elevations, and climates. We conclude that SAD will persist throughout the coming decades, given the enormity of past cutting history, fire exclusion, and current changes in climate until a more active restoration agenda is implemented.

Highly diversified shrew hepatitis B viruses corroborate ancient origins and divergent infection patterns of mammalian hepadnaviruses

Shrews, insectivorous small mammals, pertain to an ancient mammalian order. We screened 693 European and African shrews for hepatitis B virus (HBV) homologs to elucidate the enigmatic genealogy of HBV. Shrews host HBVs at low prevalence (2.5%) across a broad geographic and host range. The phylogenetically divergent shrew HBVs comprise separate species termed crowned shrew HBV (CSHBV) and musk shrew HBV (MSHBV), each containing distinct genotypes. Recombination events across host orders, evolutionary reconstructions, and antigenic divergence of shrew HBVs corroborated ancient origins of mammalian HBVs dating back about 80 million years. Resurrected CSHBV replicated in human hepatoma cells, but human- and tupaia-derived primary hepatocytes were resistant to hepatitis D viruses pseudotyped with CSHBV surface proteins. Functional characterization of the shrew sodium taurocholate cotransporting polypeptide (Ntcp), CSHBV/MSHBV surface peptide binding patterns, and infection experiments revealed lack of Ntcp-mediated entry of shrew HBV. Contrastingly, HBV entry was enabled by the shrew Ntcp. Shrew HBVs universally showed mutations in their genomic preCore domains impeding hepatitis B e antigen (HBeAg) production and resembling those observed in HBeAg-negative human HBV. Deep sequencing and in situ hybridization suggest that HBeAg-negative shrew HBVs cause intense hepatotropic monoinfections and low within-host genomic heterogeneity. Geographical clustering and low MSHBV/CSHBV-specific seroprevalence suggest focal transmission and high virulence of shrew HBVs. HBeAg negativity is thus an ancient HBV infection pattern, whereas Ntcp usage for entry is not evolutionarily conserved. Shrew infection models relying on CSHBV/MSHBV revertants and human HBV will allow comparative assessments of HBeAg-mediated HBV pathogenesis, entry, and species barriers.

Integrating phylogeographic and ecological niche approaches to delimitating cryptic lineages in the blue–green damselfish (Chromis viridis)

Species delimitation is challenging in sibling species/cryptic lineages because of the absence of clear diagnostic traits. However, integration of different approaches such as phylogeography and ecological niche comparison offers one potential approach to tease apart recently diverged lineages. In this study, we estimate the ecological niche divergence among lineages in Chromis viridis in a broad-scale phylogeographic framework to test whether the combination of these two approaches can effectively distinguish recently diverged lineages. Results from Cytb and Rag2 analyses identified two cryptic lineages (C. viridis A and C. viridis B) that diverged ∼3 Myr ago. Estimates of ecological niche divergence with 11 environmental parameters across the broad geographic range of these lineages showed overlapping ecological niches and niche conservatism. However, regardless of the incongruence between genetic and ecological niche divergence, the substantial genetic divergence between the two clades of C. viridis in both mtDNA and nuclear loci strong suggest that they are cryptic taxa.

Photoperiodic modulation of diapause induction and termination in Oobius agrili Zhang and Huang (Hymenoptera: Encyrtidae), an egg parasitoid of the invasive emerald ash borer

Oobius agrili Zhang and Huang (Hymenoptera: Encyrtidae) is a solitary and parthenogenetic egg parasitoid from China being introduced into North America (NA) as a biological control agent of the emerald ash borer (EAB), Agrilus planipennis Fairmaire (Coleoptera: Buprestidae), an extremely invasive and destructive pest of ash trees (Fraxinus spp.). Oobius agrili is being released over a broad geographical range in NA where photoperiod varies considerably during the season of parasitoid-host activity. We conducted laboratory studies to determine 1) if photoperiod-induced diapause is modulated maternally, grand-maternally, and/or directly in immature parasitoids; 2) interactions of maternal adult age and photoperiod exposure on diapause induction; 3) the critical day length for diapause induction; 4) the critical age at which photoperiod-induced diapause is modulated in developing larvae; 5) the effects of photoperiod and length of chill on diapause termination; and, 6) the effects of photoperiod on O. agrili biology across a latitudinal gradient. We found that photoperiod exposure of O. agrili larvae developing inside host eggs directly induced diapause, and maternal or grand-maternal photoperiod treatments did not affect diapause induction in their progeny. However, older adults that experienced diapause as larvae produced more progeny that entered diapause when their progeny were exposed to short-day photoperiods. All progeny produced by adults that developed from nondiapaused larvae entered diapause when exposed to short-day photoperiods. Diapause response to photoperiod declined dramatically after larvae were 6–7 days old. The critical day length for diapause induction was between 14.25 and 14.5 h of daylight (at 25 °C). Photoperiod and duration of chill affected diapause termination of diapausing O. agrili larvae. The cumulative number of degree days (base 10 °C) required for adult emergence was highest for the combination of 12 h light:12 h dark (12L:12D) photoperiod combined with the shortest chill period, and lowest for 14.5L:9.5D and 16L:8D combined with the longest chill period. We discuss the effects of photoperiod on parasitoid-host synchrony, population dynamics, and fitness of O. agrili across the geographical area where it is being released.