Boreal Lake Sediments Research Articles

Functional gene pyrosequencing reveals core proteobacterial denitrifiers in boreal lakes.

Denitrification is an important microbial process in aquatic ecosystems that can reduce the effects of eutrophication. Here, quantification and pyrosequencing of nirS, nirK, and nosZ genes encoding for nitrite and nitrous oxide reductases was performed in sediment samples from four boreal lakes to determine the structure and seasonal stability of denitrifying microbial populations. Sediment quality and nitrate concentrations were linked to the quantity and diversity of denitrification genes, the abundance of denitrifying populations (nirS and nosZ genes) correlated with coupled nitrification-denitrification (Dn), and the denitrification of the overlying water NO3- (Dw) correlated with the nirS/nirK ratio. The number of core nirS, nirK, and nosZ operational taxonomical units (OTUs) was low (6, 7, and 3, respectively), and most of these core OTUs were shared among the lakes. Dominant nirK sequences matched best with those of the order Rhizobiales, which was one of the main bacterial orders present in the sediment microbiomes, whereas the dominant nirS sequences were affiliated with the order Burkholderiales. Over half of the nosZ sequences belonged to a single OTU of the order Burkholderiales, but coupled nitrification–denitrification rate correlated with another dominant nosZ OTU assigned to the order Rhodospirillales. The study indicates that a few core proteobacterial clusters may drive denitrification in boreal lake sediments, as the same Alpha- and Betaproteobacteria denitrifier clusters were present in different lakes and seasons.

Depth-dependent molecular composition and photo-reactivity of dissolved organic matter in a boreal lake under winter and summer conditions

Abstract. Transformations of dissolved organic matter (DOM) in boreal lakes lead to large greenhouse gas emissions as well as substantial carbon storage in sediments. Using novel molecular characterization approaches and photochemical degradation experiments we studied how seasonal patterns in water column stratification affected the DOM in a Swedish lake under early spring and summer conditions. Dissolved organic carbon (DOC) concentrations were consistently higher above the sediment when compared to surface waters throughout the sampling periods. Photobleaching alone could not explain this difference in DOC because the lake was covered by 40 cm-thick ice during late winter sampling and still showed the same DOC trend. The differences in the molecular diversity between surface DOM in winter and summer were consistent with ongoing photobleaching/decarboxylation and a possible bacterial consumption of photo-products. Additional photo-degradation experiments using simulated sunlight showed a production of highly oxidized organic molecules and low molecular weight compounds in all late winter samples and also in the deep water sample in summer. In the surface summer DOM sample, few such molecules were produced during the photo-degradation experiments, confirming that DOM was already photobleached prior to the experiments. This study suggests that photobleaching, and therefore also the ice cover during winter, plays a central role in surface DOM transformation, with important differences in the molecular composition of DOM between surface and deep boreal lake waters. The release of DOC from boreal lake sediments also contribute to this pattern. Photochemical degradation of DOM may be more extensive following ice-out and water column turnover when non-light exposed and thereby photosensitive DOM is photo-mineralized. Hence, the yearly DOM photo-mineralization may be greater than inferred from studies of recently light-exposed DOM.

Impact of urbanization on the concentrations and distribution of organic contaminants in boreal lake sediments

The main goal of this study was to evaluate the impacts of a middle-sized Finnish urban area on the quality of sediments in an adjacent boreal lake. We investigated the sources and distribution of organic pollutants (polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)) in the sediments from urban stormwater traps and from Lake Vesijärvi. Grab surface sediment samples were taken from Lake Vesijärvi at various distances (25-2,000 m) from four major stormwater drainage outlets and at 15 urban stormwater traps in areas with different degrees of urbanization. These samples were analysed for 16 PAHs and 28 PCBs with gas chromatography-mass spectrometry. The concentrations of pollutants in the lake sediments were elevated in the vicinity of the urban shore (∑PAH 3-16, ∑PCB up to 0.02-0.3 mg/kg dw) and decreased as a function of distance (∑PAH 0.1-2.5, ∑PCB 0.01-0.3 mg/kg dw at a distance of more than 500 m from the shore), whereas contamination levels in suburban areas were notably lower (∑PAH 0.1-3, ∑PCB < LOQ-0.03 mg/kg dw; did not decline with distance). Possible sources and pathways of contamination were also investigated. The majority of stormwater trap sediments contained predominantly asphalt-derived PAHs due to pulverized pavement. PAHs in lake sediments were of pyrogenic origin, including the combustion of gasoline, diesel and coal. Suggested pathways of lake contamination are urban runoff discharge, boat traffic and atmospheric deposition.

Constrained microbial processing of allochthonous organic carbon in boreal lake sediments

We investigated sediment bacterial metabolism in eight lakes with different inputs of allochthonous and autochthonous organic carbon in south‐central Sweden. Sediment bacterial production, mineralization, and biomass were measured seasonally and along a lake depth gradient in lakes with different water and sediment characteristics. Sediment bacterial metabolism was primarily controlled by temperature but also by the quality and origin of organic carbon. Metabolism was positively correlated to measures of autochthonous influence on the sediment organic carbon, but did not show a similar increase with increasing input of allochthonous organic carbon. Hence, in contrast to what is currently known for the water column, increasing terrestrial organic carbon influence does not result in enhanced sediment bacterial metabolism. The role of allochthonous organic carbon as the main driver of sediment bacterial metabolism suggested so far is contrary to our findings. Meio‐ and macrobenthic invertebrate biomass were, at most, weakly correlated to bacterial metabolism and biomass, suggesting limited control of sediment bacteria by grazing. Bacterial metabolism in boreal lake sediments is constrained by low temperatures and by the recalcitrant nature of the dominant organic carbon, resulting in sediments being an effective sink of organic carbon.

Microbial biomass and community composition in boreal lake sediments

We used phospholipid fatty acids (PLFA) to determine microbial biomass and community structure in the sediments of eight boreal lakes with different loadings of allochthonous organic carbon and total phosphorus (TP) in the water during the course of a year. The total concentration of PLFA, an estimate of the microbial biomass, depended more on TP, a proxy for pelagic primary production, but not on dissolved organic carbon, a proxy for terrestrial organic carbon input. The composition of PLFAs varied considerably over time, demonstrating seasonal dynamics in microbial community composition. When PLFA profiles in all lakes and seasons are compared, community composition is more similar within season than within lakes.

Reconstruction of historical productivity using visible-near-infrared (VNIR) reflectance properties from boreal and saline lake sediments

Chlorophylls preserved in lake sediments have been used as a proxy to infer past trophic status. Recently, it has been demonstrated that visible-near-infrared (VNIR) reflectance spectroscopy can provide a rapid and non-destructive estimation of fossil chlorophylls from alpine lake sediments. The present study explores, (a) the applicability of VNIR reflectance spectroscopy to reconstructing historical productivity from boreal and saline lakes, and (b) the ability of an inference model combining all lake types to reconstruct historical chlorophyll concentrations from lake sediments. Results revealed that regardless of the lake type, a common sediment spectral feature of a reflectance trough centered near 675 nm, was observed. Additionally, the amplitude of reflectance in the VNIR region differs within and among lakes depending on their trophic states. The inferred concentration of total chlorophylls and derivatives from sediment spectral properties reflected a recent nutrient enrichment in most of the study lakes. Predicted chlorophyll concentration, when plotted against high-pressure liquid chromatography (HPLC) measured concentration combining all lake types, was found to be statically significant (r 2 = 0.80, P < 0.01). Collectively, results from this study indicate that regardless of the lake type, a common chlorophyll absorption feature near 675 nm can be detected, which is associated with contrasting limnological settings and, therefore, can be used as a viable tool to reconstruct paleoproductivity. A similar approach can be implemented for rapid and non-destructive detection of historical lake water quality in a wide range of lake sediments.

Effects of sample mass and macrofossil type on radiocarbon dating of arctic and boreal lake sediments

Dating lake sediments by accelerator mass spectrometry (AMS) 14C analysis of terrestrial plant macrofossils overcomes one of the main problems associated with dating bulk sediment samples, i.e., the presence of old organic matter. Even so, many AMS dates from arctic and boreal sites appear to misrepresent the age of the sediment. To understand the nature of these apparent dating anomalies better, we conducted a series of 14C dating experiments using samples from Alaskan and Siberian lake-sediment cores. First, to test whether our analytical procedures introduced a sample-mass bias, we obtained 14C dates for different-sized pieces of single woody macrofossils. In these sample-mass experiments, statistically equivalent ages were found for samples as small as 0.05 mg C. Secondly, to assess whether macrofossil type influenced dating results, we conducted sample-type experiments in which 14C dates were obtained for different macrofossil types sieved from the same depth in the sediment. We dated materials from multiple levels in sediment cores from Upper Capsule Lake (North Slope, northern Alaska) and Grizzly Lake (Copper River Basin, southern Alaska) and from single depths in other records from northern Alaska. In several of the experiments there were significant discrepancies between dates for different plant tissues, and in most cases wood and charcoal were older than other macrofossil types, usually by several hundred years. This pattern suggests that 14C dates for woody macrofossils may misrepresent the age of the sediment by centuries, perhaps because of their longer terrestrial residence time and the potential in-built age of longlived plants. This study identifies why some 14C dates appear to be inconsistent with the overall age-depth trend of a lake-sediment record, and it may guide the selection of 14C samples in future studies.

Storage of terrestrial carbon in boreal lake sediments and evasion to the atmosphere

Carbon mass balance studies of 20 small, forested catchments and seven lakes on the Precambrian Shield in central Ontario during a 12‐year period have shown that most carbon in the study lakes is derived from terrestrial sources, primarily peatlands, and that carbon retained by lakes (total inputs less loss via outflow from the lake) is partitioned between lake sediments and the atmosphere. The partitioning of retained carbon is a function of lake alkalinity: the ratio of evaded/sediment carbon increases with decreasing alkalinity. These carbon flux relationships were applied to the global boreal forest biome to evaluate the role of aquatic systems with respect to carbon fluxes and pools within the biome. We calculate that approximately 66 Tg of organic and inorganic carbon are exported annually from the boreal forest biome to adjacent surface waters of which 14 to 36 Tg reach coastal waters. The remainder is either evaded to the atmosphere (12 to 21 Tg yr−1) or stored in lake sediments (18 to 31 Tg yr−1). Approximately 120 Pg of carbon may be stored in boreal lake sediments, a conservative estimate based on an accumulation period of 5,000 years and a size comparable to recent boreal pool estimates of 419 Pg for peatlands and 64 Pg for plant biomass. Hence the amount of total carbon stored in the boreal forest biome may be significantly larger because of storage in lake sediments.