Biogeochemical Cycling Of Iron Research Articles

Synergies of chemodenitrification and denitrification in a saline inland lake

The interconnection between biotic and abiotic pathways involving the nitrogen and iron biogeochemical cycles has recently gained interest. While lacustrine ecosystems are considered prone to the biotic nitrate reduction (denitrification), their potential for promoting the abiotic nitrite reduction (chemodenitrification) remains unclear. In the present study, batch incubations were performed to assess the potential for chemodenitrification and denitrification in the saline inland lake Gallocanta. Sulfidic conditions are found in top sediments of the system while below (5–9 cm), it presents low organic carbon and high sulfate and ferrous iron availability. Anoxic incubations of sediment (5–9 cm) and water from the lake with nitrite revealed potential for chemodenitrification, especially when external ferrous iron was added. The obtained isotopic fractionation values for nitrite (ɛ15NNO2) were −6.8 and −12.3 ‰ and therefore, fell in the range of those previously reported for the nitrite reduction. The more pronounced ɛ15NNO2 (−12.3 ‰) measured in the experiment containing additional ferrous iron was attributed to a higher contribution of the chemodenitrification over biotic denitrification. Incubations containing nitrate also confirmed the potential for denitrification under autotrophic conditions (low organic carbon, high ferrous iron). Higher reaction rate constants were found in the experiment containing 100 μM compared to 400 μM nitrate. The obtained ɛ15NNO3 values (−8.5 and −15.1 ‰) during nitrate consumption fell in the range of those expected for the denitrification. A more pronounced ɛ15NNO3 (−15.1 ‰) was determined in the experiment presenting a lower reaction rate constant (400 μM nitrate). Therefore, in Gallocanta lake, nitrite generated during nitrate reduction can be further reduced by both the abiotic and biotic pathways. These findings establish the significance of chemodenitrification in lacustrine systems and support further exploration in aquatic environments with different levels of C, N, S, and Fe. This might be especially useful in predicting nitrous oxide emissions in natural ecosystems.

Biofilm-NOM-ferrihydrite synergy facilitate the dissimilatory iron bioreduction

Dissimilatory microbial iron reduction, a key biogeochemical process, influences the cycling of iron, hazardous metals such as arsenic, cadmium and chromium, and natural organic matter (NOM) across diverse environments like soils and aquatic systems. Despite its ecological significance, the interaction between ferrihydrite, NOM, and biofilms, particularly the synergy within these conditions, remains unclear. This study explored the bioreduction of ferrihydrite by Shewanella oneidensis MR-1 biofilms, analyzing how varying concentrations of NOM and electron donor affects this process. We developed a kinetic model to quantify iron transformation, revealing that NOM performs dual functions: as a carbon source and an electron shuttle. In carbon-rich environments, NOM acts as an electron shuttle, while insufficient carbon sources, biofilms metabolize NOM for electron transfer to ferrihydrite. The biofilm's extensive surface area facilitates the coprecipitation of NOM and ferrihydrite, enhancing electron transfer efficiency. The study noted a significant conversion of ferrihydrite into goethite and lepidocrocite, particularly at high C/Fe ratios. Additionally, integrating a coupled reactive-diffusion model, we aimed to predict iron transformation and distribution in biofilm systems. This approach emphasizes the importance of the biofilm-NOM-ferrihydrite synergy in iron biogeochemical cycles and the need for incorporating biofilm dynamics in realistic biogeochemical process models. The findings provide a new insight into the biofilm function in mediating the ferrihydrite bioreduction process in different carbon resources in real scenarios.

Organic matter preservation through complexation with iron minerals in two basins of a dimictic boreal lake with contrasting deep water redox regimes

The biogeochemical cycles of iron and organic carbon (OC) are closely interconnected in terrestrial and aquatic systems. In ocean waters, the concentration of reactive Fe is tightly controlled by soluble organic ligands. In soils, Fe stabilizes OC by forming aggregates that shield OC from degradation. In lake sediments however, the role of Fe in the preservation of OC has not been explored as extensively yet. We investigated Fe-OC interactions in sediment collected from Lake Tantaré, in which two basins are characterized by contrasting redox conditions. These contrasting redox conditions provide an opportunity to assess their importance in the formation of stable Fe-OC complexes. On average, 30.1 ± 6.4 % of total OC was liberated upon reductively dissolving reactive iron. The Fe-associated and the non-Fe-associated OC pools were characterized at the elemental (OC, TN), isotopic (δ13C, δ15N) and functional group (FTIR) levels. Large differences in OC:Fe and TN:Fe ratios between the two basins were found which were not linked to OM chemical composition but rather to differences in reactive iron concentrations stemming from the higher abundance of iron sulfides in the anoxic basin. Nevertheless, since the affinity of OM for iron sulfides is lower than that for iron hydroxides, using OC:Fe and TN:Fe ratios as a diagnostic tool for the type of OM-Fe interactions should be done with care in anoxic environment. Same caution should be considered for oxic sediments due to the variation of the proportion of iron hydroxides associated with OM from sample to sample.

Effects of biodegradable microplastics on arsenic migration and transformation in paddy soils: a comparative analysis with conventional microplastics

The combined pollution of microplastics (MPs) and arsenic (As) in paddy soils has attracted more attention worldwide. However, there are few comparative studies on the effects of biodegradable and conventional MPs on As migration and transformation. Therefore, conventional (polystyrene, polyethylene, polyvinyl chloride) and biodegradable (polybutadiene styrene, polylactic acid, polybutylene adipate terephthalate) MPs were selected to explore and demonstrate their influences and mechanism on As migration from paddy soils to overlying water and As speciation transformation through microcosmic experiment with measuring the changes of As chemical distribution, physicochemical indexes and microbial community in paddy soils. The results showed that biodegradable MPs enhanced As migration and transformation more effective than conventional MPs during 60 d. Biodegradable MPs indirectly increased the content of As(Ⅲ) and bioavailable As by changing the microbial community structure and affecting the biogeochemical cycles of carbon, nitrogen, sulfur and iron in soils, and promoted the As migration and transformation. PBS showed the strongest promoting effect, transforming to more As(Ⅲ) (11.43%) and bioavailable As (4.28%) than control. This helps to a better understanding of the effects of MPs on As biogeochemical cycle and to clarify the ecological and food safety risks of their combined pollution in soils.

Membrane vesicles in Acidithiobacillia class extreme acidophiles: influence on collective behaviors of 'Fervidacidithiobacillus caldus'.

Membrane vesicles (MVs) are envelope-derived extracellular sacs that perform a broad diversity of physiological functions in bacteria. While considerably studied in pathogenic microorganisms, the roles, relevance, and biotechnological potential of MVs from environmental bacteria are less well established. Acidithiobacillaceae family bacteria are active players in the sulfur and iron biogeochemical cycles in extremely acidic environments and drivers of the leaching of mineral ores contributing to acid rock/mine drainage (ARD/AMD) and industrial bioleaching. One key aspect of such a role is the ability of these bacteria to tightly interact with the mineral surfaces and extract electrons and nutrients to support their chemolithotrophic metabolism. Despite recent advances in the characterization of acidithiobacilli biofilms and extracellular matrix (ECM) components, our understanding of its architectural and mechanistic aspects remains scant. Using different microscopy techniques and nano-tracking analysis we show that vesiculation is a common phenomenon in distant members of the Acidithiobacillaceae family, and further explore the role of MVs in multicellular colonization behaviors using 'Fervidacidithiobacillus caldus' as a bacterial model. Production of MVs in 'F. caldus' occurred in both planktonic cultures and biofilms formed on sulfur surfaces, where MVs appeared individually or in chains resembling tube-shaped membranous structures (TSMSs) important for microbial communication. Liquid chromatography-mass spectrometry data and bioinformatic analysis of the MV-associated proteome revealed that 'F. caldus' MVs were enriched in proteins involved in cell-cell and cell-surface processes and largely typified the MVs as outer MVs (OMVs). Finally, microbiological assays showed that amendment of 'F. caldus' MVs to cells and/or biofilms affects collective colonizing behaviors relevant to the ecophysiology and applications of these acidophiles, providing grounds for their exploitation in biomining.

The role of plants in ironstone evolution: iron and aluminium cycling in the rhizosphere

The Carajás plateaus in Brazil host endemic epilithic vegetation (“campo rupestre”) on top of ironstone duricrusts, known as canga. This capping rock is primarily composed of iron(III) oxide minerals and forms a physically resistant horizon. Field observations reveal an intimate interaction between canga's surface and two native sedges (Rhynchospora barbata and Bulbostylis cangae). These observations suggest that certain plants contribute to the biogeochemical cycling of iron. Iron dissolution features at the root-rock interface were characterised using synchrotron-based techniques, Raman spectroscopy and scanning electron microscopy. These microscale characterisations indicate that iron is preferentially leached in the rhizosphere, enriching the comparatively insoluble aluminium around root channels. Oxalic acid and other exudates were detected in active root channels, signifying ligand-controlled iron oxide dissolution, likely driven by the plants' requirements for goethite-associated nutrients such as phosphorus. The excess iron not uptaken by the plant can reprecipitate in and around roots, line root channels and cement detrital fragments in the soil crust at the base of the plants. The reprecipitation of iron is significant as it provides a continuously forming cement, which makes canga horizons a ‘self-healing’ cover and contributes to them being the world's most stable continuously exposed land surfaces. Aluminium hydroxide precipitates (“gibbsite cutans”) were also detected, coating some of the root cavities, often in alternating layers with goethite. This alternating pattern may correspond with oscillating oxygen concentrations in the rhizosphere. Microbial lineages known to contain iron-reducing bacteria were identified in the sedge rhizospheric microbiome and likely contribute to the reductive dissolution of iron(III) oxides within canga. Drying or percolation of oxygenated water to these anaerobic niches have led to iron mineralisation of biofilms, detected in many root channels. This study sheds light on plants' direct and indirect involvement in canga evolution, with possible implications for revegetation and surface restoration of iron mine sites.

Impact of iron and sulfur cycling on the bioavailability of cadmium and arsenic in co-contaminated paddy soil

The biogeochemical cycling of iron (Fe) or sulfur (S) in paddy soil influences the cadmium (Cd) and arsenic (As) migration. However, the influence of coupled reduction effects and reaction precedence of Fe and S on the bioavailability of Cd and As is still not fully understood. This study aimed to reveal the influence of Fe and S reduction on soil Cd and As mobility under various pe + pH conditions and to elucidate the related mechanism in subtropical China. According to the findings, higher adsorption from Fe reduction caused high-crystalline goethite (pe + pH > 2.80) to become amorphous ferrihydrite, which in turn caused water-soluble Cd (62.0%) to first decrease. Cd was further decreased by 72.7% as a result of the transformation of SO42- to HS-/S2- via sulfate reduction and the formation of CdS and FeS. As release (an increase of 8.1 times) was consequently caused by the initial reduction and dissolution of iron oxide (pe + pH > 2.80). FeS had a lesser impact on the immobilization of As than sulfate-mediated As (V) reduction in the latter stages of the reduction process (pe + pH < 2.80). pe + pH values between 3 and 3.5 should be maintained to minimize the bioavailability of As and Cd in moderate to mildly polluted soil without adding iron oxides and sulfate amendments. The practical remediation of severely co-contaminated paddy soil can be effectively achieved by using Fe and S additions at different pe + pH conditions. This technique shows promise in reducing the bioavailability of Cd and As.

Effects of carbonate on ferrihydrite transformation in alkaline media.

Alkaline media widely exist in natural and engineered systems such as semiarid/arid areas, radioactive waste sites, and mine tailings. In these settings, the commonly occurring iron (oxyhydr)oxides differed in their ability to influence the fate of nutrients and contaminants. Due to the substantially increased atmospheric carbon dioxide (CO2) concentration, carbonate stands to increase in these media. However, how increasing carbonate affects the transformation of poorly crystalline iron (oxyhydr)oxides (e.g., two-line ferrihydrite) under alkaline conditions still remains unclear. Here, kinetics of ferrihydrite transformation were evaluated at pH ∼10 as a function of [carbonate] = 0-286 mM using synchrotron-based X-ray and vibrational spectroscopic techniques. The results showed that carbonate slowed down ferrihydrite transformation slightly and suppressed goethite formation, but promoted hematite formation regardless of its concentration. At low carbonate concentration (11.42 mM), the effect of carbonate on product formation was obvious due to the weak inner-sphere complex; however, at high carbonate concentration (80-286 mM), the effect was retarded because of the adsorption equilibrium of carbonate as well as the initial carbonate adsorption followed by desorption. Moreover, carbonate modified the morphology of hematite from rhombic to ellipsoidal to honeycomb and goethite from rod-like to needle-like to spindle-like due to the inner-sphere adsorption-desorption of carbonate and adsorption of hydroxyl ions on reactive sites of iron (oxyhydr)oxides in alkaline media. The results suggest that the concurrently increasing carbonate with enhanced atmospheric CO2 could control the transformation and occurrence of iron (oxyhydr)oxides in natural and engineered environments and have important implications for the biogeochemical cycles of iron and carbon.

Effects of static magnetic field on the sulfate metabolic pathway involved in Magnetospirillum magneticum AMB-1 cell growth and magnetosome formation.

Magnetotactic bacteria (MTB) can use their unique intracellular magnetosome organelles to swim along the Earth's magnetic field. They play important roles in the biogeochemical cycles of iron and sulfur. Previous studies have shown that the applied magnetic fields could affect the magnetosome formation and antioxidant defense systems in MTB. However, the molecular mechanisms by which magnetic fields affect MTB cells remain unclear. We aim to better understand the dark at 28°C-29°C for 20 h, as shownthe interactions between magnetic fields and cells, and the mechanism of MTB adaptation to magnetic field at molecular levels. We performed microbiological, transcriptomic, and genetic experiments to analyze the effects of a weak static magnetic field (SMF) exposure on the cell growth and magnetosome formation in the MTB strain Magnetospirillum magneticum AMB-1. The results showed that a 1.5 mT SMF significantly promoted the cell growth but reduced magnetosome formation in AMB-1, compared to the geomagnetic field. Transcriptomic analysis revealed decreased expression of genes primarily involved in the sulfate reduction pathway. Consistently, knockout mutant lacking adenylyl-sulfate kinase CysC did no more react to the SMF and the differences in growth and Cmag disappeared. Together with experimental findings of increased reactive oxidative species in the SMF-treated wild-type strain, we proposed that cysC, as a key gene, can participate in the cell growth and mineralization in AMB-1 by SMF regulation. This study suggests that the magnetic field exposure can trigger a bacterial oxidative stress response involved in AMB-1 growth and magnetosome mineralization by regulating the sulfur metabolism pathway. CysC may serve as a pivotal enzyme in mediating sulfur metabolism to synchronize the impact of SMF on both growth and magnetization of AMB-1.

Authigenic Iron Is a Significant Component of Oceanic Labile Particulate Iron Inventories

AbstractParticulate phases transport trace metals (TM) and thereby exert a major control on TM distribution in the ocean. Particulate TMs can be classified by their origin as lithogenic (crustal material), biogenic (cellular), or authigenic (formed in situ), but distinguishing these fractions analytically in field samples is a challenge often addressed using operational definitions and assumptions. These different phases require accurate characterization because they have distinct roles in the biogeochemical iron cycle. Particles collected from the upper 2,000 m of the northwest subtropical Atlantic Ocean over four seasonal cruises throughout 2019 were digested with a chemical leach to operationally distinguish labile particulate material from refractory lithogenics. Direct measurements of cellular iron (Fe) were used to calculate the biogenic contribution to the labile Fe fraction, and any remaining labile material was defined as authigenic. Total particulate Fe (PFe) inventories varied &lt;15% between seasons despite strong seasonality in dust inputs. Across seasons, the total PFe inventory (±1SD) was composed of 73 ± 13% lithogenic, 18 ± 7% authigenic, and 10 ± 8% biogenic Fe above the deep chlorophyll maximum (DCM), and 69 ± 8% lithogenic, 30 ± 8% authigenic, and 1.1 ± 0.5% biogenic Fe below the DCM. Data from three other ocean regions further reveal the importance of the authigenic fraction across broad productivity and Fe gradients, comprising ca. 20%–27% of total PFe.

Microbial community dynamics and cycling of plutonium and iron in a seasonally stratified and radiologically contaminated pond

Plutonium (Pu) cycling and mobility in the environment can be impacted by the iron cycle and microbial community dynamics. We investigated the spatial and temporal changes of the microbiome in an iron (Fe)-rich, plutonium-contaminated, monomictic reservoir (Pond B, Savannah River Site, South Carolina, USA). The microbial community composition varied with depth during seasonal thermal stratification and was strongly correlated with redox. During stratification, Fe(II) oxidizers (e.g., Ferrovum, Rhodoferax, Chlorobium) were most abundant in the hypoxic/anoxic zones, while Fe(III) reducers (e.g., Geothrix, Geobacter) dominated the deep, anoxic zone. Sulfate reducers and methanogens were present in the anoxic layer, likely contributing to iron and plutonium cycling. Multinomial regression of predicted functions/pathways identified metabolisms highly associated with stratification (within the top 5%), including iron reduction, methanogenesis, C1 compound utilization, fermentation, and aromatic compound degradation. Two sediment cores collected at the Inlet and Outlet of the pond were dominated by putative fermenters and organic matter (OM) degraders. Overall, microbiome analyses revealed the potential for three microbial impacts on the plutonium and iron biogeochemical cycles: (1) plutonium bioaccumulation throughout the water column, (2) Pu–Fe-OM-aggregate formation by Fe(II) oxidizers under microaerophilic/aerobic conditions, and (3) Pu–Fe-OM-aggregate or sediment reductive dissolution and organic matter degradation in the deep, anoxic waters.

Improved microbial reduction of biogenic and abiogenic goethite by diesel soot

The biogeochemical cycling of iron is crucial to plenty of environmental processes, and is often influenced by black carbon with high electrical conductivity and abundant functional groups. This study for the first time revealed that diesel particulate matter (DPM), a typical black carbon material which often caused serious environmental effects, could significantly promote dissimilatory reduction of both abiogenic and biogenic goethite (CGt and BGt) by Shewanella oneidensis MR-1. In 7 days, Fe(II) production in CGt systems containing 0.5, 5, 10, 25, and 50 mg/L of DPM were 1.2, 1.3, 1.8, 1.9, and 2.7 folds higher than that in the system without DPM (0.12 mM), respectively. During the bioreduction of BGt, Fe(II) concentrations were 2.4–3.4 folds higher than those in the CGt systems, and were increased by 4.8%− 41.7% with the addition of 0.5–50 mg/L DPM. X-ray diffraction (XRD) analysis demonstrated that goethite was the sole mineralized product during the bioreduction of CGt, while vivianite appeared gradually during the microbial transformation of BGt. DPM enhanced electron transfer between cells and goethite via serving as electron shuttles. The results of this study would improve our understanding of interactions among microbes, natural minerals, and black carbon in the natural environments.

External magnetic field have significant effects on diversity of magnetotactic bacteria in sediments from Yangtze River, Chagan Lake and Zhalong Wetland in China

Magnetotactic bacteria (MTB) can rapidly relocate to optimal habitats by magnetotaxis, and play an important role in iron biogeochemical cycling. This study aimed to evaluate the contribution of the external magnetostatic field to the diversity of MTB in freshwater sediments from Yangtze River (Changjiang River, CJ), Chagan Lake (CGH) and Zhalong Wetland (ZL). The magnetic field intensity was tightly associated with the community richness of MTB in CJ, whereas it was closely related to the diversity of MTB in CGH and ZL (p < 0.05), elucidating a significant variation in the community composition of MTB. Magnetic exposure time appeared more significant correlation with community richness than diversity for MTB in CJ and CGH (p < 0.05), while an opposite relationship existed in ZL (p < 0.01). Herbaspirillum (93.81–96.48 %) dominated in the sediments of these surfacewatesr regardless of waterbody types, while it shifted to Magnetospirillum in ZL under 100 Gs magnetic field. The network connectivity and stability of MTB deteriorate with the increase of magnetic field intensity. Functional analysis showed that the Two-component system and ABC transporter system of MTB obviously responded to magnetic field intensity and exposure time. Our findings will pave the way to understanding the response mechanism of MTB community in freshwater sediments to the external magnetostatic field.

The Effects of Aniline-Promoted Electron Shuttle-Mediated Goethite Reduction by Shewanella oneidensis MR-1 and theDegradation of Aniline

The biological reduction of Fe (III) is common in underground environments. This process not only affects the biogeochemical cycle of iron but also influences the migration and transformation of pollutants. Humic substances are considered effective strategies for improving the migration and transformation of toxic substances and enhancing the bioavailability of Fe (III). In this study, the electron shuttle anthraquinone-2-sulfonate (AQS) significantly promoted the bio-reduction of Fe (III). On this basis, different concentrations of aniline were added. The research results indicate that at an aniline concentration of 3 μM, the production of Fe (II) in the reaction system was 2.51 times higher compared to the microbial reaction group alone. Furthermore, the degradation of aniline was most effective in this group. The increased consumption of sodium lactate suggests that aniline, under the mediation of AQS, promoted the metabolism of Shewanella oneidensis MR-1 cells and facilitated the involvement of more electrons in the reduction process. After the reaction, the solid mineral Fe (II)-O content increased to 41.32%. This study provides insights into the reduction mechanism of Fe (III) in the complex environment of microorganisms, iron minerals, electron shuttles, and pollutants. It aims to offer a theoretical basis for the biodegradation of aromatic hydrocarbon pollutants.

Genomic Approaches and Analyses of Slow-Growing Obligate Iron-Metabolizing Microbes

The biogeochemical cycling of iron is a vastly important process that has been a major factor defining life on Earth both before and after the Great Oxidation Event. While both abiotic and biotic factors contributing to the iron cycle have been studied for many years, the bulk of studies on iron metabolizing organisms has focused on a select few, easily manipulated model organisms. Recent discoveries have identified several unique and difficult to work with organisms from iron rich environments that survive solely on iron as either an electron acceptor or donor. The Fe(III)-reducing, Gram-positive Firmicute Metallumcola ferriviriculae MK1 was recently isolated from the Soudan Underground Mine in northern Minnesota from brine waters that intersect 2.7 Ga banded iron formations within the Canadian Shield. M. ferriviriculae MK1, which grows anaerobically using Fe(III)-citrate as its sole electron acceptor, is also mesophilic, spore-forming, culturable, and rich in multiheme cytochromes. Multiheme cytochromes are a well-established mechanism for Fe(III) reduction among the model Gram-negative microbes, such as Shewanella oneidensis and Geobacter sulfurreducens, but is poorly studied in Gram-positives. While the slow growth times of M. ferriviriculae MK1 make it difficult to study in the laboratory, the genome encodes homologs to multiheme cytochromes utilized by G. sulfurreducens for Fe(III) reduction. Specifically, two gene clusters (MK1_2258-2259 and MK1_2264-2265) each encode proteins homologous to the b-type cytochrome domain (60% and 61% sequence similarity, respectively) and c-type cytochrome domain (44.9% and 47.14%, respectively) of cbcL, which is used for reduction of mid-range redox potential acceptors in G. sulfurreducens and MK1_1670 is homologous to imcH (54.3% sequence similarity), which is used for higher redox potential acceptors. Additionally, the MK1 genome contains genes associated with sporulation, including genes encoding the master sporulation regulator spo0A, the peptidoglycan remodeling enzymes spoIID, spoIIP, and spoIIM, the spore morphogenesis protein spoIVA, and the small, acid-soluble spore proteins sspA, sspB, sspC, sspD, and sspF. Extraction and isolation of MK1 spores will facilitate evaluation of sporulation and germination conditions to shed light on a crucial preservation mechanism from an organism found in an environment with limited nutrients. Further evaluation into this novel organism can also give us insights into the microbial impacts on the iron cycle in the deep terrestrial biosphere. Another microbe of interest that was isolated from an iron-rich environment is the obligate Fe(II)-oxidizing Mariprofundus ferrooxydans PV-1, which was enriched from iron-rich mats associated with hydrothermal vents at the Kama’ehuakanaloa Seamount (previously Lo’ihi) in Hawaii. M. ferrooxydans PV-1 is a stalk-forming Fe(II)-oxidizing microbe and the first Zetaproteobacterium characterized. While M. ferrooxydans PV-1 can reliably be grown (doubling time of ~12 hours) in liquid medium traditional genetic methods are challenging because it does not make colonies on agar plates. To identify essential and non-essential genes, we developed a conjugation method using E. coli and successfully generated a transposon library in M. ferrooxydans. Libraries were grown under kanamycin selection with Fe(II)-chloride as the sole electron donor and samples isolated for analysis at two different timepoints. Deep sequencing of the mutant population at these timepoints was performed and the reads were mapped back to the M. ferrooxydans PV-1 genome to identify transposon insertion sites. Initial evaluation of the reads has identified 31 transposon insertion sites found within both the first- and second-generation populations, with 21 hits representing stable insertions in non-essential genes, including a predicted malate dehydrogenase (SPV1_772) and a predicted phospholipase (SPV1_8286), that may be useful future targets for gene insertion sites. Further evaluation comparing the read depth between the generations should identify genes that were selected for or against during the subculturing. These studies and approaches are providing insights into the roles these challenging, non-model organisms are performing in iron-rich environments, which provides a better context for the biogeochemical cycling of iron in relevant biospheres.

The existence of ferric hydroxide links the carbon and nitrogen cycles by promoting nitrite-coupled methane anaerobic oxidation.

Microorganism-mediated anaerobic oxidation of methane can efficiently mitigate methane atmospheric emissions and is a key process linking the biogeochemical cycles of carbon, nitrogen, and iron. The results showed that methane oxidation and nitrite removal rates in the CF were 1.12 and 1.28 times higher than those in CK, respectively, suggesting that ferric hydroxide can enhance nitrite-driven AOM. The biochemical process was mediated by the enrichment of methanogens, methanotrophs, and denitrifiers. Methanobacterium and Methanosarcina were positively correlated with Fe3+ and Fe2+, whereas Methylocystis and Methylocaldum were positively correlated with methane, and denitrifiers were positively correlated with nitrite. Metagenomic analysis revealed that the genes related to methane oxidation, nitrogen reduction, and heme c-type cytochrome were upregulated in CF, indicating that a synergistic action of bacteria and methanogens drove AOM via diverse metabolic pathways, within which ferric hydroxide played a crucial role. This study provides novel insights into the synergistic mechanism of ferric iron and nitrite-driven AOM.

Biochar regulates biogeochemical cycling of iron and chromium in paddy soil system by stimulating Geobacter and Clostridium

In rice systems, microbial reduction of iron (Fe) has been recognized as a crucial biogeochemical process that regulates Fe and chromium (Cr) translocation; however, the underlying processes are unknown. Here, maize straw-biochar was applied at 1% (w/w) to paddy soil spiked with 300 mg kg-1 Cr under two phosphorus (P) levels (0 or 90 mg kg-1), aiming to investigate the impact of biochar on the biochemical cycle of Fe and Cr and their toxicity to rice. The key microbial groups affecting Fe dissimilatory reduction and their environmental drivers were explored. Biochar inhibited Cr uptake of roots by 36%, owing to a higher iron plaque (IP) level on the rice root surface. According to correlation analysis, pore water-Fe concentration was strongly linked to the abundances of Geobacter (r = 0.81~0.94, p < 0.05) and Clostridium (r = 0.83~0.95, p < 0.05), indicating that Geobacter and Clostridium played essential roles in Fe reduction. Redundancy analysis showed that labile carbon and pore water P concentrations were the key determinants influencing Fe-reducing bacterial abundances, accounting for 42% and 32% of their variation in community composition, respectively. Besides, biochar increased Fe and P in the root cell wall, which retained more Cr. Overall, Cr stress in rice under biochar treatment was relieved through increasing IP formation and altering subcellular distribution. These mechanistic insights have important implications for reducing Cr uptake by rice.

Iron reduction as a viable metabolic pathway in Enceladus’ ocean

AbstractRecent studies postulated the viability of a suite of metabolic pathways in Enceladus’ ocean motivated by the detection of H2 and CO2 in the plumes – evidence for available free energy for methanogenesis driven by hydrothermal activity at the moon's seafloor. However, these have not yet been explored in detail. Here, a range of experiments were performed to investigate whether microbial iron reduction could be a viable metabolic pathway in the ocean by iron-reducing bacteria such as Geobacter sulfurreducens. This study has three main outcomes: (i) the successful reduction of a number of crystalline Fe(III)-bearing minerals predicted to be present at Enceladus was shown to take place to differing extents using acetate as an electron donor; (ii) substantial bacterial growth in a simulated Enceladus ocean medium was demonstrated using acetate and H2(g) separately as electron donors; (iii) microbial iron reduction of ferrihydrite was shown to partially occur at pH 9, the currently accepted value for Enceladus’ ocean, whilst being severely hindered at the ambient ocean temperature of 0°. This study proposes the possibilities for biogeochemical iron cycling in Enceladus’ ocean, suggesting that a strain of iron-reducing bacteria can effectively function under Enceladus-like conditions.

Photoferrotrophic Bacteria Initiated Plate Tectonics in the Neoarchean

AbstractPlate tectonics distinguishes Earth from the other terrestrial planets but its initiation mechanism and onset time are debated. We propose plate tectonics was initiated by the deposition of magnetite‐rich banded iron formations (BIFs) through biogeochemical iron cycling in Neoarchean oceans. In the photic zone of proto‐continental margins, photoferrotrophic bacteria efficiently oxidized the dissolved Fe(II) and induced massive precipitation of ferric oxyhydroxide, which would rapidly react with Fe(II)‐rich hydrothermal fluids from coeval vigorous volcanism in Neoarchean oceans to produce magnetite‐rich BIFs. Mechanical models demonstrate that the localization of high‐density BIF deposition near proto‐continents induces collapse of the lithosphere and can initiate the earliest subduction. The peak deposition of BIFs in 2.75–2.40 Ga provides a time constraint on the inception of plate tectonics.

Uniquely low stable iron isotopic signatures in deep marine sediments caused by Rayleigh distillation

Dissimilatory iron reduction (DIR) is suggested to be one of the earliest forms of microbial respiration. It plays an important role in the biogeochemical cycling of iron in modern and ancient sediments. Since microbial iron cycling is typically accompanied by iron isotope fractionation, stable iron isotopes are used as tracer for biological activity. Here we present iron isotope data for dissolved and sequentially extracted sedimentary iron pools from deep and hot subseafloor sediments retrieved in the Nankai Trough off Japan. Dissolved iron (Fe(II)aq) is isotopically light throughout the ferruginous sediment interval but some samples have exceptionally light isotope values. Such light values have never been reported in natural marine environments and cannot be solely attributed to DIR. We show that the light isotope values are best explained by a Rayleigh distillation model where Fe(II)aq is continuously removed from the pore water by adsorption onto iron (oxyhydr)oxide surfaces. While the microbially mediated Fe(II)aq release has ceased due to an increase in temperature beyond the threshold of mesophilic microorganisms, the abiotic adsorptive Fe(II)aq removal continued, leading to uniquely light isotope values. These findings have important implications for the interpretation of dissolved iron isotope data especially in deep subseafloor sediments.