Biogenic Hydrocarbons Research Articles

ChemInform Abstract: Nighttime Radical Observations and Chemistry

AbstractReview: 487 refs.

ChemInform Abstract: Laboratory Studies of Organic Peroxy Radical Chemistry: An Overview with Emphasis on Recent Issues of Atmospheric Significance

AbstractReview: 224 refs.

Anaerobic utilization of toluene by marine alpha- and gammaproteobacteria reducing nitrate

Aromatic hydrocarbons are among the main constituents of crude oil and represent a major fraction of biogenic hydrocarbons. Anthropogenic influences as well as biological production lead to exposure and accumulation of these toxic chemicals in the water column and sediment of marine environments. The ability to degrade these compounds in situ has been demonstrated for oxygen- and sulphate-respiring marine micro-organisms. However, if and to what extent nitrate-reducing bacteria contribute to the degradation of hydrocarbons in the marine environment and if these organisms are similar to their well-studied freshwater counterparts has not been investigated thoroughly. Here we determine the potential of marine prokaryotes from different sediments of the Atlantic Ocean and Mediterranean Sea to couple nitrate reduction to the oxidation of aromatic hydrocarbons. Nitrate-dependent oxidation of toluene as an electron donor in anoxic enrichment cultures was elucidated by analyses of nitrate, nitrite and dinitrogen gas, accompanied by cell proliferation. The metabolically active members of the enriched communities were identified by RT-PCR of their 16S rRNA genes and subsequently quantified by fluorescence in situ hybridization. In all cases, toluene-grown communities were dominated by members of the Gammaproteobacteria, followed in some enrichments by metabolically active alphaproteobacteria as well as members of the Bacteroidetes. From these enrichments, two novel denitrifying toluene-degrading strains belonging to the Gammaproteobacteria were isolated. Two additional toluene-degrading denitrifying strains were isolated from sediments from the Black Sea and the North Sea. These isolates belonged to the Alphaproteobacteria and Gammaproteobacteria. Serial dilutions series with marine sediments indicated that up to 2.2×10(4) cells cm(-3) were able to degrade hydrocarbons with nitrate as the electron acceptor. These results demonstrated the hitherto unrecognized capacity of alpha- and gammaproteobacteria in marine sediments to oxidize toluene using nitrate.

Overview of the 2010 Carbonaceous Aerosols and Radiative Effects Study (CARES)

Abstract. Substantial uncertainties still exist in the scientific understanding of the possible interactions between urban and natural (biogenic) emissions in the production and transformation of atmospheric aerosol and the resulting impact on climate change. The US Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) program's Carbonaceous Aerosol and Radiative Effects Study (CARES) carried out in June 2010 in Central Valley, California, was a comprehensive effort designed to improve this understanding. The primary objective of the field study was to investigate the evolution of secondary organic and black carbon aerosols and their climate-related properties in the Sacramento urban plume as it was routinely transported into the forested Sierra Nevada foothills area. Urban aerosols and trace gases experienced significant physical and chemical transformations as they mixed with the reactive biogenic hydrocarbons emitted from the forest. Two heavily-instrumented ground sites – one within the Sacramento urban area and another about 40 km to the northeast in the foothills area – were set up to characterize the evolution of meteorological variables, trace gases, aerosol precursors, aerosol size, composition, and climate-related properties in freshly polluted and "aged" urban air. On selected days, the DOE G-1 aircraft was deployed to make similar measurements upwind and across the evolving Sacramento plume in the morning and again in the afternoon. The NASA B-200 aircraft, carrying remote sensing instruments, was also deployed to characterize the vertical and horizontal distribution of aerosols and aerosol optical properties within and around the plume. This overview provides: (a) the scientific background and motivation for the study, (b) the operational and logistical information pertinent to the execution of the study, (c) an overview of key observations and initial findings from the aircraft and ground-based sampling platforms, and (d) a roadmap of planned data analyses and focused modeling efforts that will facilitate the integration of new knowledge into improved representations of key aerosol processes and properties in climate models.

Spatial and seasonal variations of fine particle water-soluble organic carbon (WSOC) over the southeastern United States: implications for secondary organic aerosol formation

Abstract. Secondary organic aerosol (SOA) in the southeastern US is investigated by analyzing the spatial-temporal distribution of water-soluble organic carbon (WSOC) and other PM2.5 components from 900 archived 24-h Teflon filters collected at 15 urban or rural EPA Federal Reference Method (FRM) network sites throughout 2007. Online measurements of WSOC at an urban/rural-paired site in Georgia in the summer of 2008 are contrasted to the filter data. Based on FRM filters, excluding biomass-burning events (levoglucosan < 50 ng m−3), WSOC and sulfate were highly correlated with PM2.5 mass (r2~0.7). Both components comprised a large mass fraction of PM2.5 (13% and 31%, respectively, or ~25% and 50% for WSOM and ammonium sulfate). Sulfate and WSOC both tracked ambient temperature throughout the year, suggesting the temperature effects were mainly linked to faster photochemistry and/or synoptic meteorology and less due to enhanced biogenic hydrocarbon emissions. FRM WSOC, and to a lesser extent sulfate, were spatially homogeneous throughout the region, yet WSOC was moderately enhanced (27%) in locations of greater predicted isoprene emissions in summer. A Positive Matrix Factorization (PMF) analysis identified two major source types for the summer WSOC; 22% of the WSOC were associated with ammonium sulfate, and 56% of the WSOC were associated with brown carbon and oxalate. A small urban excess of FRM WSOC (10%) was observed in the summer of 2007, however, comparisons of online WSOC measurements at one urban/rural pair (Atlanta/Yorkville) in August 2008 showed substantially greater difference in WSOC (31%) relative to the FRM data, suggesting a low bias for urban filters. The measured Atlanta urban excess, combined with the estimated boundary layer heights, gave an estimated Atlanta daily WSOC production rate in August of 0.55 mgC m−2 h−1 between mid-morning and mid-afternoon. This study characterizes the regional nature of fine particles in the southeastern US, confirming the importance of SOA and the roles of both biogenic and anthropogenic emissions.

제주지역에 분포하는 활엽수의 BVOCs 배출특성

Emission rates of biogenic hydrocarbon emitted from broad-leaved trees grown at Jeju Island were estimated using a dynamic enclosure method. Leaf temperature, PAR and relative humidity were monitored during the sampling time. The emission rates of isoprene and monoterpene were measured for five plants(Carpinus laxiflora, Quercus serrata, Styrax japonicus, Quercus acutissima, Quercus crispula) during the sampling period at the Halla mountain sites. Among five tree species, the highest isoprene emission rate of 10.60 <TEX>${\mu}g\;gdw^{-1}hr^{-1}$</TEX> was observed for Quercus serrata. The seasonal emission rates were the highest during summer and the emission of isoprene was highly affected by light and temperature variations. The highest emission rate of isoprene was occurred between 13:00 and 14:00, but isoprene was not emitted in nighttime because of the absence of light.

The contribution of organics to atmospheric nanoparticle growth

The growth of the smallest atmospheric particles to sizes at which they may act as seeds for cloud droplets is a key step linking aerosols to clouds and climate. A synthesis of research indicates that the mechanisms controlling this growth depend on the size of the growing particle. Aerosols have a strong, yet poorly quantified, effect on climate. The growth of the smallest atmospheric particles from diameters in the nanometre range to sizes at which they may act as seeds for cloud droplets is a key step linking aerosols to clouds and climate. In many environments, atmospheric nanoparticles grow by taking up organic compounds that are derived from biogenic hydrocarbon emissions. Several mechanisms may control this uptake. Condensation of low-volatility vapours and formation of organic salts probably dominate the very first steps of growth in particles close to 1 nm in diameter. As the particles grow further, formation of organic polymers and effects related to the phase of the particle probably become increasingly important. We suggest that dependence of particle growth mechanisms on particle size needs to be investigated more systematically.

Parameterising secondary organic aerosol from α-pinene using a detailed oxidation and aerosol formation model

Abstract. A new parameter model for α-pinene secondary organic aerosol (SOA) is presented, based on simulations with the detailed model BOREAM (Biogenic hydrocarbon Oxidation and Related Aerosol formation Model). The parameterisation takes into account the influence of temperature, type of oxidant, NOx-regime, photochemical ageing and water uptake, and is suitable for use in global chemistry transport models. BOREAM is validated against recent photooxidation smog chamber experiments, for which it reproduces SOA yields to within a factor of 2 in most cases. In the simple chemical mechanism of the parameter model, oxidation of α-pinene generates peroxy radicals, which, upon reaction with NO or HO2, yield products corresponding to high or low-NOx conditions, respectively. The model parameters – i.e. the temperature-dependent stoichiometric coefficients and partitioning coefficients of 10 semi-volatile products – are obtained from simulations with BOREAM, including a prescribed diurnal cycle for the radiation, oxidant and emission levels, as well as a deposition sink for the particulate and gaseous products. The effects of photooxidative ageing are implicitly included in the parameterisation, since it is based on near-equilibrium SOA concentrations, obtained through simulations of a two-week period. In order to mimic the full BOREAM model results both during SOA build-up and when SOA has reached an equilibrium concentration, the revolatilisation of condensable products due to photochemical processes is taken into account through a fitted pseudo-photolysis reaction of the lumped semi-volatile products. Modelled SOA mass yields are about ten times higher in low-NOx than in high-NOx conditions, with yields of more than 50% in the low-NOx OH-initiated oxidation of α-pinene, considerably more than in previous parameterisations based on smog chamber experiments. Sensitivity calculations indicate that discrepancies between the full model and the parameterisation due to variations in assumed oxidant levels are limited, but that changes in the radiation levels can lead to larger deviations. Photolysis of species in the particulate phase is found to strongly reduce SOA yields in the full model. Simulations of ambient conditions at 17 different sites (using oxidant, radiation and meteorological data from a global chemistry-transport model) show that overall, the parameterisation displays only little bias (2%) compared with the full model, whereas averaged relative deviations amount to about 11%. Water uptake is parameterised using fitted activity coefficients, resulting in a good agreement with the full model.

Primary and secondary sources of formaldehyde in urban atmospheres: Houston Texas region

Abstract. We evaluate the rates of secondary production and primary emission of formaldehyde (CH2O) from petrochemical industrial facilities and on-road vehicles in the Houston Texas region. This evaluation is based upon ambient measurements collected during field studies in 2000, 2006 and 2009. The predominant CH2O source (92 ± 4% of total) is secondary production formed during the atmospheric oxidation of highly reactive volatile organic compounds (HRVOCs) emitted from the petrochemical facilities. Smaller contributions are primary emissions from these facilities (4 ± 2%), and secondary production (~3%) and primary emissions (~1%) from vehicles. The primary emissions from both sectors are well quantified by current emission inventories. Since secondary production dominates, control efforts directed at primary CH2O emissions cannot address the large majority of CH2O sources in the Houston area, although there may still be a role for such efforts. Ongoing efforts to control alkene emissions from the petrochemical facilities, as well as volatile organic compound emissions from the motor vehicle fleet, will effectively reduce the CH2O concentrations in the Houston region. We do not address other emission sectors, such as off-road mobile sources or secondary formation from biogenic hydrocarbons. Previous analyses based on correlations between ambient concentrations of CH2O and various marker species have suggested much larger primary emissions of CH2O, but those results neglect confounding effects of dilution and loss processes, and do not demonstrate the causes of the observed correlations. Similar problems must be suspected in any source apportionment analysis of secondary species based upon correlations of ambient concentrations of pollutants.

Distribution and sources of petroleum-hydrocarbon in soil profiles of the Hunpu wastewater-irrigated area, China's northeast

Petroleum-contamination soil is ubiquitous. The various sources of this contamination necessitate the effective evaluation of the contamination level, contaminant transport analysis and identification of the pollution sources. In the present study, soil profiles were collected from both upland and paddy fields along the strike of the irrigation canals in the Hunpu wastewater irrigation region in northeast China. The concentrations of aliphatic hydrocarbons in the soil were analyzed. The sites near the oil wells, wastewater irrigation canal and Shenyang City were found to have high concentrations of [∑n-alkanes (sum of n-alkanes): (0.8 to 32.2) μgg−1 dry wt.; TAH (total aliphatic hydrocarbons): (5.0 to 161.2) μgg−1 dry wt.]. The geochemical analysis results showed various degrees of petroleum pollution. The ∑n-alkanes varied (0.5 to 7.5) μgg−1 while TAH varied (1.6 to 47.2) μgg−1 at other sites where biogenic hydrocarbons were dominant. The results from the principal components and redundancy analyses showed that the samples containing hydrocarbons from wastewater irrigation, oil wells, and atmospheric deposition were partitioned into different groups. These results further represented that the soil properties had some effects on hydrocarbon distribution especially the sand content which had significantly negative correlation with oil-related hydrocarbons. The current study showed that the early input and vertical migration of hydrocarbons resulted in a high deep-soil hydrocarbon concentration.

TEMPORAL AND SPATIAL TRENDS OF TOTAL ALIPHATIC HYDROCARBONS OF DIESEL RANGE AND TRACE ELEMENTS IN SEDIMENTS AND MUSSELS OF THE CORRAL BAY AREA, VALDIVIA, SOUTH CENTRAL CHILE

Sediments and mussel specimens of Mytilus chilensis were analyzed for organic pollutant fingerprints and heavy metals in the Corral Bay area of Valdivia, South Central Chile during the period 2003-2004. GC-MS analysis show hydrocarbon fingerprints corresponding mainly to mixed inputs of aliphatic hydrocarbons of the TPH-diesel fraction and biogenic hydrocarbons, indicating low to medium contamination by petroleum hydrocarbons with high biodegradation of petroleum in sediments at Las Coloradas, La Escuela and Corral Bay (C 17 /Pri < 1 and C 18 /Phy < 1). Mussel TPH fingerprints show weathered hydrocarbons resulting in a zone of increased concentration of cyclic respect to acyclic aliphatic components (UCM), indicating the presence of petroleum hydrocarbons. No temporal variation the in concentration of TPH-diesel found in sediments as well as mussels were observed except for samples collected during January 2004. TPH concentration levels in the sediments varied from 0.4 µgg-1 to 33.8 µgg-1 d.w. whereas in mussels varied between 61 µg g-1 and 287 µgg-1 d.w. Heavy metals were also analyzed by atomic absorption spectrometry and low concentration as well as no seasonal variations of concentration were found in mussels at each sampling point and a relatively even distribution of metals among stations was observed. Maximum concentrations in all sampling points of sediments were found for Fe (24128-43791 µgg-1) and Mn (181-388 µgg-1) while the minimum concentration was found for Pb (nd-12 µgg-1). According to the Sediment Quality Guidelines (SQGs-NOAA), the concentration levels of Cu and As in all sediment sampling points are above the “Effects Range-Low” (ERL), indicating that there may be a probable toxicity effect over the biota and attention must be paid on a moderate range of priority.

Nighttime radical observations and chemistry

The nitrate radical, NO(3), is photochemically unstable but is one of the most chemically important species in the nocturnal atmosphere. It is accompanied by the presence of dinitrogen pentoxide, N(2)O(5), with which it is in rapid thermal equilibrium at lower tropospheric temperatures. These two nitrogen oxides participate in numerous atmospheric chemical systems. NO(3) reactions with VOCs and organic sulphur species are important, or in some cases even dominant, oxidation pathways, impacting the budgets of these species and their degradation products. These oxidative reactions, together with the ozonolysis of alkenes, are also responsible for the nighttime production and cycling of OH and peroxy (HO(2) + RO(2)) radicals. In addition, reactions of NO(3) with biogenic hydrocarbons are particularly efficient and are responsible for the production of organic nitrates and secondary organic aerosol. Heterogeneous chemistry of N(2)O(5) is one of the major processes responsible for the atmospheric removal of nitrogen oxides as well as the cycling of halogen species though the production of nitryl chloride, ClNO(2). The chemistry of NO(3) and N(2)O(5) is also important to the regulation of both tropospheric and stratospheric ozone. Here we review the essential features of this atmospheric chemistry, along with field observations of NO(3), N(2)O(5), nighttime peroxy and OH radicals, and related compounds. This review builds on existing reviews of this chemistry, and encompasses field, laboratory and modelling work spanning more than three decades.

Laboratory studies of organic peroxy radical chemistry: an overview with emphasis on recent issues of atmospheric significance

Organic peroxy radicals (often abbreviated RO(2)) play a central role in the chemistry of the Earth's lower atmosphere. Formed in the atmospheric oxidation of essentially every organic species emitted, their chemistry is part of the radical cycles that control the oxidative capacity of the atmosphere and lead to the formation of ozone, organic nitrates, organic acids, particulate matter and other so-called secondary pollutants. In this review, laboratory studies of this peroxy radical chemistry are detailed, as they pertain to the chemistry of the atmosphere. First, a brief discussion of methods used to detect the peroxy radicals in the laboratory is presented. Then, the basic reaction pathways - involving RO(2) unimolecular reactions and bimolecular reactions with atmospheric constituents such as NO, NO(2), NO(3), O(3), halogen oxides, HO(2), and other RO(2) species - are discussed. For each of these reaction pathways, basic reaction rates are presented, along with trends in reactivity with radical structure. Focus is placed on recent advances in detection methods and on recent advances in our understanding of radical cycling processes, particularly pertaining to the complex chemistry associated with the atmospheric oxidation of biogenic hydrocarbons.

One Step Ultrasound Extraction and Purification Method for the Gas Chromatographic Analysis of Hydrocarbons from Marine Sediments: Application to the Monitoring of Italian Coasts

In this study, we describe the development of an ultrasound-assisted method for the simultaneous extraction and purification of hydrocarbons from marine sediments and then its application to the gas chromatographic analysis for the estimation of the biogenic anthropogenic and petrogenic sources of hydrocarbons present in marine sediments. The extraction of hydrocarbons and their simultaneous purification from other organic compounds present in sediments was performed by sonication of a three phase system consisting of sediment, hexane and a HCl medium at pH 2. This method allowed accurate recoveries of the hydrocarbon content in samples. In the following GC-FID analysis, we examined the hydrocarbon distribution in four different areas of the Italian seas determining the pristane to phytane ratio, the total odd n-alkanes to even n-alkanes ratio (carbon preference index), the low molecular weight to high molecular weight ratio, perylene content and the presence of the so called unresolved complex mixture; according to recent studies, these parameters support the identification of the biogenic, anthropogenic and petrogenic hydrocarbon sources present in environmental samples. GC chromatograms were then re-examined by means of two different statistical multivariate methods: two-dimensional mapping (2DMAP) and independent component analysis (ICA). 2DMAP showed the presence of a significant heterogeneity in the hydrocarbon composition of different areas and within samples of a same area. ICA confirmed the general heterogeneity evidenced by 2DMAP allowing in addition to characterise the hydrocarbon composition of one of the investigated areas.

Changes in monoterpene mixing ratios during summer storms in rural New Hampshire (USA)

Abstract. Monoterpenes are an important class of biogenic hydrocarbons that influence ambient air quality and are a principle source of secondary organic aerosol (SOA). Emitted from vegetation, monoterpenes are a product of photosynthesis and act as a response to a variety of environmental factors. Most parameterizations of monoterpene emissions are based on clear weather models that do not take into account episodic conditions that can drastically change production and release rates into the atmosphere. Here, the monoterpene dataset from the rural Thompson Farm measurement site in Durham, New Hampshire is examined in the context of a set of known severe storm events. While some storm systems had a negligible influence on ambient monoterpene mixing ratios, the average storm event increased mixing ratios by 0.59 ± 0.21 ppbv, a factor of 93% above pre-storm levels. In some events, mixing ratios reached the 10's of ppbv range and persisted overnight. These mixing ratios correspond to increases in the monoterpene emission rate, ranging from 120 to 1240 g km−2 h−1 compared to an estimated clear weather rate of 116 to 193 g km−2 h−1. Considering the regularity of storm events over most forested areas, this could be an important factor to consider when modeling global monoterpene emissions and their resulting influence on the formation of organic aerosols.

In-cloud oxalate formation in the global troposphere: a 3-D modeling study

Abstract. Organic acids attract increasing attention as contributors to atmospheric acidity, secondary organic aerosol mass and aerosol hygroscopicity. Oxalic acid is globally the most abundant dicarboxylic acid, formed via chemical oxidation of gas-phase precursors in the aqueous phase of aerosols and droplets. Its lifecycle and atmospheric global distribution remain highly uncertain and are the focus of this study. The first global spatial and temporal distribution of oxalate, simulated using a state-of-the-art aqueous-phase chemical scheme embedded within the global 3-dimensional chemistry/transport model TM4-ECPL, is here presented. The model accounts for comprehensive gas-phase chemistry and its coupling with major aerosol constituents (including secondary organic aerosol). Model results are consistent with ambient observations of oxalate at rural and remote locations (slope = 1.16 ± 0.14, r2 = 0.36, N = 114) and suggest that aqueous-phase chemistry contributes significantly to the global atmospheric burden of secondary organic aerosol. In TM4-ECPL most oxalate is formed in-cloud and less than 5 % is produced in aerosol water. About 62 % of the oxalate is removed via wet deposition, 30 % by in-cloud reaction with hydroxyl radical, 4 % by in-cloud reaction with nitrate radical and 4 % by dry deposition. The in-cloud global oxalate net chemical production is calculated to be about 21–37 Tg yr−1 with almost 79 % originating from biogenic hydrocarbons, mainly isoprene. This condensed phase net source of oxalate in conjunction with a global mean turnover time against deposition of about 5 days, maintain oxalate's global tropospheric burden of 0.2–0.3 Tg, i.e. 0.05–0.1 Tg-C that is about 5–9 % of model-calculated water soluble organic carbon burden.

Organosulfates and oxidation products from biogenic hydrocarbons in fine aerosols from a forest in North West Europe during spring

Abstract Organosulfates of monoterpenes and isoprene, as well as their oxidation products have been identified in biogenic secondary organic aerosols (BSOA) from both laboratory and field studies. Organosulfates provide an interesting coupling between air pollution and formation of low-volatility BSOA. HPLC quadrupole time-of-flight mass spectrometry was used to study polar acidic monoterpene and isoprene oxidation products including pinic acid, pinonic and terpenylic acid along with organosulfates and nitrooxy organosulfates in aerosols from ambient air. The method was first validated by analysis of spiked quartz filters, which showed acceptable recoveries >74% for pinic acid, pinonic acid, camphor sulphonic acid and adipic acid. Acetonitrile was identified as a better solvent than methanol for extraction and analysis of pinonic acid and adipic acid, due to improved analytical sensitivity and prevention of methyl ester formation during sample extraction. PM1 (i.e, aerosols with an aerodynamic diameter ≤1 μm) were collected during spring 2008 in a forest in Denmark with mixed deciduous and coniferous trees. Average concentrations of the most abundant compounds were: pinic acid: 1.5 ng m−3, pinonic acid: 3.0 ng m−3, terpenylic acid: 0.8 ng m−3 and 3-methyl-1,2,3-butanetricarboxylic acid: 3.0 ng m−3. Organosulfates and nitrooxy organosulfates were identified in a majority of the daily samples and the highest levels were observed during a warm period in late spring. As a first approach, due to the lack of authentic standards, organosulfates and nitrooxy organosulfates were tentatively quantified based on the analytical response of camphor sulphonic acid. Generally the concentrations of organosulfates and nitrooxy organosulfates were lower than first generation oxidation products. The maximum concentration of a total of 10 organosulfates and nitrooxy organosulfates were found to be about three times lower than pinonic acid with a maximum concentration of 8 ng m−3. A correlation between total organosulfates (including nitrooxy organosulfates) and organic acids was observed with R2 = 0.89, indicating that the presence of organosulfates is closely connected to photochemical oxidation and aging of volatile organic compounds.

Aliphatic and polycyclic aromatic hydrocarbons in the surface sediments from the Eastern Aegean: assessment and source recognition of petroleum hydrocarbons

Aliphatic and polycyclic aromatic hydrocarbons (PAHs) were determined in surficial sediments from the Aegean Sea in the Eastern Mediterranean in 2008. Total aliphatic hydrocarbons (n-C12 to n-C35) ranged from 330 to 2,660 ng g(-1) dry weight (dwt), while aromatics (19 PAHs) varied between 73.5 and 2,170 ng g(-1) dwt. Total concentrations of both aliphatic hydrocarbons and PAHs ranged from a relatively low to a moderate PAHs pollution compared to other urbanized coastal areas worldwide. PAH consisted mainly of pyrolytic four- to five-ring compounds. Both pyrolytic and petrogenic PAHs are present in most samples, although petroleum-derived PAH are dominant at Izmir Inner Bay (IIB) and Dardanelles Strait, and pyrolytic sources are prevalent in other sampling sites. A high contribution of perylene, a diagenetic originated PAH, to the total penta PAHs was found greater than 70% in Meric River Estuary, Dikili Bay, Candarli Bay, and Gokova Bay sites. The spatial distributions of aliphatic hydrocarbons and PAHs indicated that urban runoff and transport from the continental shelf is the major input pathway of anthropogenic and biogenic hydrocarbons from terrestrial sources in the near-shore area. PAH levels at all sites were below the effects range-low (ERL) and effects range-median (ERM) values except fluorene. The average and maximum fluorene concentrations exceeded ERL, but below ERM, in the IIB. Meanwhile, the concentration levels of naphthalene, fluorene, phenanthrene, fluoranthene, pyrene, benzo[a]anthracene, and chrysene were higher than threshold effect level values at the same site, but all these compounds were significantly lower than the probable effect level values. The results indicated that the sediments should have potential biological impact.

Anthropogenic hydrocarbons in sediments of the northeastern Havana seaboard

The presence of petrogenic hydrocarbons was evaluated in surface sediments from the northeastern Havana littoral (Cuba). Different geochemical biomarkers were used to differentiate between biogenic and anthropogenic hydrocarbons. Sediment samples were Soxhlet extracted and analyzed by gas chromatography with flame ionization and mass spectrometer detectors. Total concentrations of aliphatic hydrocarbons ranged from 5.5 ± 0.3 to 225.7 ± 12.6 µg g–1. The presence of an unresolved complex mixture, and the detection of hopanes and of the isoprenoid compounds pristane and phytane revealed the occurrence of petroleum-derived hydrocarbons in the sediment samples.

The Chemistry of Atmosphere-Forest Exchange (CAFE) Model – Part 1: Model description and characterization

Abstract. We present the Chemistry of Atmosphere-Forest Exchange (CAFE) model, a vertically-resolved 1-D chemical transport model designed to probe the details of near-surface reactive gas exchange. CAFE integrates all key processes, including turbulent diffusion, emission, deposition and chemistry, throughout the forest canopy and mixed layer. CAFE utilizes the Master Chemical Mechanism (MCM) and is the first model of its kind to incorporate a suite of reactions for the oxidation of monoterpenes and sesquiterpenes, providing a more comprehensive description of the oxidative chemistry occurring within and above the forest. We use CAFE to simulate a young Ponderosa pine forest in the Sierra Nevada, CA. Utilizing meteorological constraints from the BEARPEX-2007 field campaign, we assess the sensitivity of modeled fluxes to parameterizations of diffusion, laminar sublayer resistance and radiation extinction. To characterize the general chemical environment of this forest, we also present modeled mixing ratio profiles of biogenic hydrocarbons, hydrogen oxides and reactive nitrogen. The vertical profiles of these species demonstrate a range of structures and gradients that reflect the interplay of physical and chemical processes within the forest canopy, which can influence net exchange.