Binding Energy Analysis Research Articles

The shift in chemical potential of electrons upon intercalation of ZrSe2 by copper

The effective valence of copper in the region of its concentration up to x = 0.25 in CuxZrSe2 has been determined based on an analysis of binding energies of the Zr3d and Se3d core levels and the electromotive forces from an electrochemical experiment for CuxZrSe2, as a function of Cu concentration x. It has been shown that the domination of covalent bonding between copper and the ZrSe2 host lattice within this concentration range results in a notable reduction in the effective valence of copper in comparison to its nominal value.

Investigation on the stabilities of doubly heavy tetraquark states

In our recent work [S. Noh and W. Park, Nonrelativistic quark model analysis of Tcc, ], the mass and binding energy of Tcc are found to be 3873 MeV and −2 MeV, respectively, which align with the observations reported at LHCb [R. Aaij (LHCb Collaboration), Observation of an exotic narrow doubly charmed tetraquark, ]. Based on our latest quark model approach, we extend our search for other potentially stable configurations of doubly heavy tetraquarks using our nonrelativistic quark model described in Noh and Park, [Nonrelativistic quark model analysis of Tcc, ]. Our numerical calculations indicate that the u¯s¯cb configuration is deeply bound. However, the u¯d¯cb configuration with the isospin symmetry in the light quark sector is relatively less bound. In this study, we emphasize a compulsory aspect for requiring a complete set of three-dimensional harmonic oscillator bases through the discussion of the u¯s¯cb configuration and investigate the essential differences between the u¯s¯cb and u¯d¯cb configurations. Published by the American Physical Society 2024

Tuning the electronic properties of armchair boron phosphide nanoribbons via H/O/F passivation and Stone–Wales defect

To explore the possibility of various edge-passivating elements for armchair boron phosphide nanoribbons (ABPNR), we performed first-principles computation under the flagship of density functional theory. The bare and H, O, F-passivated structures were considered for the present calculations. The possibility of probable edge-passivation using these elements was assured by the binding energy analysis. Moreover, O emerges as the most efficient passivating element which is stable by more than 400 meV over F-passivation for nanoribbons of smallest width. It is predicted that considered passivating elements affected structural as well as electronic properties of the ABPNR. It is observed that O-passivation leads to narrow band gap behavior while F-passivations yields a band gap of 1.07 eV to 1.55 eV. The Stone–Wales defects are also discussed, showcasing their potential to tune the electronic properties of ABPNR for future semiconductor devices.

Decoding the structural and electronic variations in M2Bn- (M = Sc, Y, La; n = 6–9) clusters: Insights for nanomaterial design

A series of low-lying energy isomers of M2Bn- (M = Sc, Y, La; n = 6–9) clusters were investigated using density functional theory. By conducting functional tests and comparing with reported experimental photoelectron spectra, we confirmed that when n = 6 − 8, their ground-state structures are nearly identical, differing only in the distance between the M atom and the boron skeleton. Moreover, for n = 7–8, all ground states exhibit consistent inverse-sandwich structures. However, for n = 9, three systems exhibit different types of ground-state structures: The Sc-doped system has a quasi-inverse-sandwich structure, the Y-doped system has two possible coexisting structures, and the La-doped system has an inverse-sandwich structure. Subsequent average binding energy analyses, chemical bonding analyses and stability analyses further elucidated the reasons. Our research provides theoretical insights for a deeper understanding of the various properties of clusters doped with different elements and for exploring potential building blocks for nanomaterials.

Does Positron Attachment Take Place in Water Solution?

We performed a computational study of positron attachment to hydrated amino acids, namely glycine, alanine, and proline in the zwitterionic form. We combined the sequential quantum mechanics/molecular mechanics (s-QM/MM) method with various levels of any particle molecular orbital (APMO) calculations. Consistent with previous studies, our calculations indicate the formation of energetically stable states for the isolated and microsolvated amino acids, in which the positron localizes around the carboxylate group. However, for the larger clusters, composed of 7 to 40 water molecules, hydrogen bonding between the solute and solvent molecules disfavors positron attachment to the amino acids, giving rise to surface states in which the positron is located around the water-vacuum interface. The analysis of positron binding energies, positronic orbitals, radial probability distributions, and annihilation rates consistently pointed out the change from positron-solute to positron-solvent states. Even with the inclusion of an electrostatic embedding around the aggregates, the positrons did not localize around the solute. Positron attachment to molecules in the gas phase is a well-established fact. The existence of hydrated positronic molecules could also be expected from the analogy with transient anion states, which are believed to participate in radiation damage. Our results indicate that positron attachment to hydrated biomolecules, even to zwitterions with negatively charged carboxylated groups, would not take place. For the larger clusters, in which positron-water interactions are favored, the calculations indicate an unexpectedly large contribution of the core orbitals to the annihilation rates, between 15 and 20%. Finally, we explored correlations between positron binding energies (PBEs) and dipole moments, as well as annihilation rates and PBEs, consistent with previous studies for smaller clusters.

Synthesis, modeling, bioactivity, docking, binding energy analysis of new effective piperazine derivatives as effective drug candidates for treatment of Parkinson’s disease

In this study, density functional theory (DFT) calculations were initially conducted to explore the molecular structure, the highest occupied molecular orbital (HOMO), the lowest unoccupied molecular orbital (LUMO), LUMO-HOMO energies, as well as the excited states of new piperazine derivatives using the CAM-B3LYP/Def2TZV level of theory. Detailed quantum molecular descriptors for the compounds, including ionization potential (IP), electron affinities (EA), hardness (η), softness (S), electronegativity (μ), electrophilic index (ω), electron-donating power (ω−), electron accepting power (ω+), and energy gap (Eg), were calculated. The chemical properties and bioactivity of these compounds, such as molecular weight, lipophilicity, number of hydrogen bond (HB) donors and acceptors, molar refractivity, polarity, solubility, flexibility and saturation, were also investigated. Subsequently, a molecular docking study was performed to identify effective compounds that could act as strong inhibitors against Parkinson’s Disease. The Michaelis-Menten constant (Km) was determined using the CAM-B3LYP/Def2TZV level of theory. The binding energy between the protein with ID:5CGJ and the organic compounds demonstrated excellent binding affinity. Therefore, the structures: 4-(4-methylpiperazin-1-yl)-4-oxo-N-(4-sulfamoylphenyl)butanamide (21), N-(4-((4-methylpiperazin-1-yl)methyl)phenyl)-4-(morpholinomethyl) benzamide (22), cаn bе usеd for potential application аgаinst Parkinson’s Disease.

Unveiling therapeutic biomarkers and druggable targets in ALS: An integrative microarray analysis, molecular docking, and structural dynamic studies

Amyotrophic lateral sclerosis (ALS), commonly known as Lou Gehrig's disease, is a debilitating neurodegenerative disorder characterized by the progressive degeneration of nerve cells in the brain and spinal cord. Despite extensive research, its precise etiology remains elusive, and early diagnosis is challenging due to the absence of specific tests. This study aimed to identify potential blood-based biomarkers for early ALS detection and monitoring using datasets from whole blood samples (GSE112680) and oligodendrocytes, astrocytes, and fibroblasts (GSE87385) obtained from the NCBI-GEO repository. Through bioinformatics analysis, including protein-protein interactions and molecular pathway analyses, we identified differentially expressed genes (DEGs) associated with ALS. Notably, ALS2, ADH7, ALDH8A1, ALDH3B1, ABHD2, ABHD17B, ABHD12, ABHD13, PGAM2, AURKB, ANAPC11, VAPA, UNC45B, and TNNT2 emerged as top-ranked DEGs, implicated in drug metabolism, protein depalmytilation, and the AKT/mTOR signaling pathways. Among these, AurKB established as a potential therapeutic biomarker with relevance to various neurological conditions. Consequently, AurKB was selected for identifying potential therapeutic molecules and utilized for in silico structural characterization studies. Exploration of the IMPATT database led to the discovery of a lead compound similar to Fostamatinib, currently used for AurKB. Initial molecular docking and MMGBSA-based binding energy analysis were followed by molecular dynamics simulation (MDS) and free energy landscape (FEL) analysis to validate the ligand's binding efficacy and understand dynamic processes within the biological system. The identified potential biomarkers and lead molecule provide novel insights into the correlation between blood cell transcripts and ALS pathology, paving the way for blood-based diagnostic tools for early ALS detection and ongoing disease monitoring.

A comprehensive analysis of the spectroscopic and drug-like properties of dimethyl 5-hydroxybenzene-1,3-dicarboxylate: insights from DFT and MD simulations

ABSTRACT An in-depth investigation was undertaken to explore the ground-state molecular and electronic structure of Dimethyl 5-hydroxybenzene-1,3-dicarboxylate (D5HD). The potential energy scan of D5HD at various dihedral angles identified the lowest energy conformer, which was re-optimised at the higher basis set. The recorded FT-Raman and FT-IR spectra were compared with corresponding theoretical spectra, demonstrating a high degree of coherence. A comprehensive Natural Bond Orbital analysis was done for D5HD to gain insights for the overall electronic distribution within the molecule. Additionally, nonlinear optical (NLO) properties along with various DFT-based descriptors were calculated. Molecular docking studies against human acetylcholinesterase enzyme (PDB 2JF0), D5HD displayed good binding affinity. The study revealed that hydrogen bonded as well as van der Waals interactions exist between D5HD and different residues in the binding cavity of the target protein. The 100 ns MD simulation confirms the conformational stability of protein (2JF0)–ligand (D5HD) complex. The binding energy and residue decomposition analysis performed using MM-GBSA approach showed positive results with binding energy of −17.76 kcal/mol. Furthermore, D5HD effectively passed all pharmacokinetic filters, establishing its potential as a promising candidate in the quest for novel acetylcholinesterase inhibitors. Highlights Systematic exploration of the structure and spectroscopic properties of D5HD. Molecular docking between D5HD and acetylcholinesterase (PDB 2JF0) reveals the establishment of hydrogen bonds and Van der Waals interactions. D5HD successfully complies with all relevant pharmacokinetic filters. MD simulation analysis on 2JF0–D5HD complex confirms the conformational stability. Energy and residue decomposition based on MMGBSA approach.

Heat shock protein (Hsp27)-ceramide synthase (Cers1) protein-protein interactions provide a new avenue for unexplored anti-cancer mechanism and therapy

Hsp27 is a member of the small heat-shock proteins (sHSPs) – the known cellular line of defence against abnormal protein folding behaviors. Nevertheless, its upregulation is linked to a variety of pathological disorders, including several types of cancers. The ceramide synthases (CerS) mediate the synthesis of ceramide, a critical structural and signaling lipid. Functionally, downstream ceramide metabolites are implicated in the apoptosis process and their abnormal functionality has been linked to anticancer resistance. Studies showed that CerS1 are possibly inhibited by Hsp27 leading to biochemical anticancer effects in vitro. Nevertheless, the nature of such protein-protein interaction (PPI) has not been considerably investigated in molecular terms, hence, we present the first description of the dynamics CerS1-Hsp27 interaction landscapes using molecular dynamics simulations. Time-scale molecular dynamics simulation analysis indicated a system-wide conformational events of decreased stability, increased flexibility, reduced compactness, and decreased folding of CerS1. Analysis of binding energy showed a favorable interaction entailing 56 residues at the interface and a total stabilizing energy of −158 KJ/mol. The CerS1 catalytic domain experienced an opposite trend compared to the protein backbone. Yet, these residues adopted a highly compact conformation as per DCCM and DSSP analysis. Furthermore, conserved residues (SER 212, ASP 213, ALA 240, GLY 243, ASP 319) comprising the substrate shuttling machinery showed notable rigidity implying a restrained ceramide precursor access and assembly; hence, a possible inhibitory mechanism. Findings from this report would streamline a better molecular understanding of CerS1-Hsp27 interactions and decipher its potential avenue toward unexplored anti-cancer mechanisms and therapy.

2D hydrogen bonded organic framework (2D-HOF) in benzodioxane-coupled-pyridine as a charge carrier: Synthesis, structural, quantum computational investigation

This research presents a comprehensive investigation into the synthesis, structural features, and charge carrier properties of a novel 2D Hydrogen-Bonded Organic Framework (2D-HOF) formed by Benzodioxane-Coupled-Pyridine. The synthesis involves the reaction of 2,3-dihydrobenzo[b][1,4]dioxin-6-carbaldehyde with pyridine-2-carbohydrazide in the presence of acetic acid and ethanol solvent, leading to the formation of (E)-2-(2-((2,3-dihydrobenzo[b][1,4]dioxin-6-yl)methylene)hydrazinyl)pyridine (DDMP). Single crystal X-ray diffraction analysis reveals the monoclinic crystal system with the P21/n space group, showcasing a non-planar structure due to a distinctive twisting motion in the dioxane ring. The crystal packing is governed by a complex network of intermolecular interactions, including hydrogen bonds, short contacts, and π-stacking, ultimately forming a stable 2D-HOF. Hirshfeld Surface (HS) analysis provides insights into key interactions, emphasizing the significance of hydrogen bonding, short contacts, and stacking interactions in molecular packing. The 2D fingerprint (FP) plots quantitatively highlight crucial interatomic contacts, with hydrogen bonding, CH…H, and O…H interactions dominating. Molecular Electrostatic Potential (MEP) analysis reveals potential sites for electrophilic and nucleophilic attacks, aiding in predicting reactive sites and charge carrier behavior. Energy framework analysis sheds light on the pairwise interaction energies within the crystal structure, emphasizing the role of dispersive forces in stabilizing the crystal lattice. Density functional theory calculations indicate the molecule's charge transfer capabilities, suggesting its suitability for applications such as batteries, supercapacitors, and solar cells. Additionally, global reactivity parameters suggest that the 2D HOF material has electron and proton conduction capabilities, making it versatile for various applications. Atoms-in-molecules (AIM) topology analysis, particularly non-covalent interaction (NCI) analysis, provides a detailed understanding of intra and intermolecular interactions, highlighting hydrogen bonding and π…π interactions. H-bond binding energy analysis confirms the non-covalent nature of identified interactions, emphasizing their strength and significance.

Multimerization of TREM2 is impaired by Alzheimer's disease-associated variants.

The immune receptor triggering receptor expressed on myeloid cells 2 (TREM2) is among the strongest genetic risk factors for Alzheimer's disease (AD) and is a therapeutic target. TREM2 multimers have been identified in crystallography and implicated in the efficacy of antibody therapeutics; however, the molecular basis for TREM2 multimerization remains poorly understood. We used molecular dynamics simulations and binding energy analysis to determine the effects of AD-associated variants on TREM2 multimerization and validated with experimental results. TREM2 trimers remained stably bound, driven primarily by salt bridge between residues D87 and R76 at the interface of TREM2 units. This salt bridge was disrupted by the AD-associated variants R47H and R98W and nearly ablated by the D87N variant. This decreased binding among TREM2 multimers was validated with co-immunoprecipitation assays. This study uncovers a molecular basis for TREM2 forming stable trimers and unveils a novel mechanism by which TREM2 variants may increase AD risk by disrupting TREM2 oligomerization to impair TREM2 normal function. Triggering receptor expressed on myeloid cells 2 (TREM2) multimerization could regulate TREM2 activation and function. D87-R76 salt bridges at the interface of TREM2 units drive the formation of stable TREM2 dimers and trimers. Alzheimer's disease (AD)-associated R47H and R98W variants disrupt the D87-R76 salt bridge. The AD-associated D87N variant leads to complete loss of the D87-R76 salt bridge.

Adsorption and dissociation of NO on gold–palladium alloy clusters: A density functional theory study

Alloy nanoclusters often exhibit distinctive and exceptional performance, making them especially appealing as catalysts. In this study, the adsorption and dissociation of NO on AumPdn (m + n = 8) clusters was studied using density functional theory (DFT). The most stable structures of AumPdn (m + n = 8) clusters were reported by the CALYPSO search screening program and DFT geometric optimization. The binding energy and bond critical point (BCP) analysis show that alloying could lead to a more compact structure and relatively stronger stability. Molecular electrostatic potential (MESP) analysis revealed that the optimal site for the adsorption of the NO molecule on AumPdn (m + n = 8) clusters was at the top site, with Pd atoms being the preferred choice. Projected density of states (PDOS) calculations demonstrate that the d-band center of the Au5Pd3 cluster was closest to the Fermi level, enhancing the interaction between the cluster surface and adsorbed molecules. The activation energy of NO dissociation on the Au5Pd3 surface is the lowest at 0.48 eV. These findings indicate that the Au5Pd3 nano-alloy cluster shows promise as an effective catalyst in the direct transformation of NO into non-toxic substances.

Assessing the Efficacy of Acanthoic Acid Isolated from Acanthopanax koreanum Nakai in Male Infertility: An In Vivo and In Silico Approach.

Acanthoic acid, a diterpene isolated from the root bark of Acanthopanax koreanum Nakai, possesses diverse pharmacological activities, including anti-inflammatory, anti-diabetic, gastrointestinal protection, and cardiovascular protection. This study is the first to investigate the egg-hatching rates of Drosophila melanogaster affected by acanthoic acid. Notably, male flies supplemented with 10 μM acanthoic acid exhibited a strong increase in hatching rates compared with controls under adverse temperature conditions, suggesting a potential protective effect against environmental stressors. Molecular docking simulations revealed the binding affinities and specific interactions between acanthoic acid and proteins related to male infertility, including SHBG, ADAM17, and DNase I, with binding affinity values of -10.2, -6.8, and -5.8 kcal/mol, respectively. Following the docking studies, molecular dynamic simulations were conducted for a duration of 100 ns to examine the stability of these interactions. Additionally, a total binding energy analysis and decomposition analysis offered insights into the underlying energetic components and identified key contributing residues.

Crystal structure-dependent evaluation of chloride ions resistance of iron passivation film in reinforced concrete at the nanoscale

In reinforced concrete, the passivation film refers to the spontaneous formation of an ultra-thin film of corrosion product on a metal's surface that acts as a barrier to additional chemical reactions and is extraordinarily helpful in mitigating corrosion damage. However, the Cl ions can significantly harm the completeness of the passivation film and thus facilitate the corrosion process. In view of the complexity of the passivation film composition, in this work, the Cl attack process of typical structures of passivation films (α-Fe2O3, β-Fe2O3 and γ-Fe2O3) is studied by Bonn-Oppenheimer molecular dynamics and density functional theory. It is found that the β-Fe2O3 and γ-Fe2O3 have the best and worst resistance of Cl ions, respectively. The reduced gradient density analyses indicate that the Cl ions can break chemical bonds of passivation film by creating Cl–Fe bonds. The details of binding energy and electron localization analyses prove that the rank of the strength of binding is γ-Fe2O3 > α-Fe2O3 > β-Fe2O3. Moreover, Different from the surface adsorption of α-Fe2O3 and β-Fe2O3, γ-Fe2O3 adsorbs Cl ions into the matrix, which also results in the formation of more chemical bonds. Further analyses of the density of states also confirm the bonding formation in the Cl ions attack process. This work suggests that the increase in the proportion of β-Fe2O3 in the composition of the passivation film is a potential approach for inhibiting corrosion. And also an effective method for evaluating the performance of passivation films is also proposed, especially since it is extremely difficult to evaluate given its nanometer characteristics.

Real-Space Pseudopotential Method for the Calculation of Third-Row Elements X-ray Photoelectron Spectroscopic Signatures.

X-ray photoelectron spectroscopy (XPS) is a powerful characterization technique that unveils subtle chemical environment differences via core-electron binding energy (CEBE) analysis. We extend the development of real-space pseudopotential methods to calculating 1s, 2s, and 2p3/2 CEBEs of third-row elements (S, P, and Si) within the framework of Kohn-Sham density-functional theory (KS-DFT). The new approach systematically prevents variational collapse and simplifies core-excited orbital selection within dense energy level distributions. However, careful error cancellation analysis is required to achieve accuracy comparable to all-electron methods and experiments. Combined with real-space KS-DFT implementation, this development enables large-scale simulations with both Dirichlet boundary conditions and periodic boundary conditions.

Unveiling the influence of end-capped acceptors modification on photovoltaic properties of non-fullerene fused ring compounds: a DFT/TD-DFT study.

Herein, unique A-D-A configuration-based molecules (NBD1-NBD7) were designed from the reference compound (NBR) by utilizing the end-capped acceptor modification approach. Various electron-withdrawing units -F, -Cl, -CN, -NO2, -CF3, -HSO3, and -COOCH3, were incorporated into terminals of reference compound to designed NBD1-NBD7, respectively. A theoretical investigation employing the density functional theory (DFT) and time-dependent DFT (TD-DFT) was performed at B3LYP/6-311G(d,p) level. To reveal diverse opto-electronic and photovoltaic properties, the frontier molecular orbitals (FMOs), absorption maxima (λ max), density of states (DOS), exciton binding energy (E b), open-circuit voltage (V oc) and transition density matrix (TDM) analyses were executed at the same functional. Moreover, the global reactivity parameters (GRPs) were calculated using the HOMO-LUMO energy gaps from the FMOs. Significant results were obtained for the designed molecules (NBD1-NBD7) as compared to NBR. They showed lesser energy band gaps (2.024-2.157 eV) as compared to the NBR reference (2.147 eV). The tailored molecules also demonstrated bathochromic shifts in the chloroform (671.087-717.164 nm) and gas phases (623.251-653.404 nm) as compared to NBR compound (674.189 and 626.178 nm, respectively). From the photovoltaic perspectives, they showed promising results (2.024-2.157 V). Furthermore, the existence of intramolecular charge transfer (ICT) in the designed compounds was depicted via their DOS and TDM graphical plots. Among all the investigated molecules, NBD4 was disclosed as the excellent candidate for solar cell applications owing to its favorable properties such as the least band gap (2.024 eV), red-shifted λ max in the chloroform (717.164 nm) and gas (653.404 nm) phases as well as the minimal E b (0.126 eV). This is due to the presence of highly electronegative -NO2 unit at the terminal of electron withdrawing acceptor moiety, which leads to increased conjugation and enhanced the intramolecular charge transfer (ICT) rate. The obtained insights suggested that the designed molecules could be considered as promising materials for potential applications in the realm of OSCs.

In silico Analysis of Natural Inhibitors against HPV E6 Protein.

Drug re-purposing is one of the cost-effective methods to establish novel therapeutics against many diseases. Established natural products are collected from databases and used to potentially screen them against HPV E6 protein, a critical viral protein. This study aims to design potential small molecule inhibitors against HPV E6 protein using structure-based approaches. Ten natural anti-cancerous compounds (Apigenin, Baicalein, Baicalin, Ponicidin, Oridonin, Lovastatin, Triterpenoid, Narirutin, Rosmarinic Acid, and Xanthone) were selected by review of the literature. These compounds were screened using Lipinski Rule of Five. Out of ten compounds, seven were found to satisfy Rule of five. Docking of these seven compounds was carried out using AutoDock software and corresponding Molecular Dynamics Simulations were performed by GROMACS. Among the seven compounds docked with the E6 target protein, six compounds showed lesser binding energy than the reference compound, Luteolin. The three-dimensional structures of E6 protein and the corresponding ligand complexes were visualised and analysed using PyMOL whereas the two-dimensional images of protein-ligand interactions were obtained by LigPlot⁺ software to study the specific interactions. ADME analysis using SwissADME software revealed that all the compounds except Rosmarinic acid have good gastrointestinal absorption and solubility characteristics while Xanthone and Lovastatin showed blood brain barrier penetration properties. Considering the binding energy and ADME analysis, Apigenin and Ponicidin are found to be most suitable for de novo</i> designing of potential inhibitors against the HPV16 E6 protein. Further, synthesis and characterization of these potential HPV16 E6 inhibitors will be carried out and their functional evaluation using cell culture-based assays will be undertaken.

‘Exploration of photovoltaic behavior of bithiophene-functionalized dispiro-oxepine based hole-transporting materials for efficient perovskite solar cells’

Perovskite solar cells (PSCs) have received great attention from researchers due to their superior photovoltaic properties, high efficiency, and low cost. In this study, bithiophene dispiro-oxepine based five hole-transporting materials (DDOF1, DDOF2, DDOF3, DDOF4, and DDOF5) are designed by the substitution of end-capped acceptors via thiophene-based bridge to enhance the photovoltaic properties of PSCs. The results showed that designed HTMs have deeper HOMO levels (−4.88 eV to −5.04 eV), high solubility, and compatible stability with lower energy gaps (2.04 eV to 2.59 eV) than the reference (EHOMO = −4.55 eV, Eg = −3.49 eV) and Spiro-OMeTAD (EHOMO = −4.47 eV, Eg = −3.86 eV), which improved hole extraction and the open-circuit voltage in the PSCs. Moreover, the binding energy (0.41 eV to 0.46 eV) and TDM analysis indicated that DDOF1-DDOF5 HTMs have high charge mobility compared to the reference molecule DDOF (0.61 eV). The DDOF1-DDOF5 HTMs indicated anticipated higher power conversion efficiency and open-circuit voltage than the reference molecule. Overall, our findings proved that designed molecules are efficient HTMs for the manufacture of high-efficiency PSCs in the solar industry.

Structural evolution and electronic properties of the La-doped germanium clusters

The geometric structure, relative stability, and electronic properties of LaGe n − (n = 3–14) are systematically studied by density functional theory, and the results are compared with the experimental literature data. It is found that the structures of 10A-I, 11A-I, and 14A-I are clearly two-parted and have the potential to design molecular chains. Combined with the average binding energy and second-order differential energy analysis, it is speculated that LaGe 9 − is a magic number cluster. The density of states and natural population analysis indicate that electrons consistently transfer from the La atom to Ge atoms. Doped La atom increases the interaction with Ge atoms and improve the stability of pure germanium clusters. Interestingly, LaGe 9 − has a high transfer charge number, and its high stability can be further explained by the spherical jellium model. The investigation into LaGe 9 − magic number clusters offer valuable insights for the exploration of novel materials with superior stability and performance.

A novel loofah-like chitosan/alginate composite aerogels prepared for efficient removal of perchlorate: Experimental and DFT study

Perchlorate, an emerging contaminant in drinking water, has attracted global attention. In this study, a novel loofah-like porous chitosan/alginate composite aerogel (CTS/SA-m) was fabricated using ionotropic pregelation and freeze-dried technology to effectively adsorb perchlorate. The performance, isotherms, thermodynamics, and kinetics of perchlorate adsorption by CTS/SA-m were systematically discussed. The results showed that the loofah-like CTS/SA-m with high hydrophilicity exhibited excellent adsorption properties. Over 95 % of the removal rate in 10 min can be achieved, with initial concentration of perchlorate and CTS/SA-m dosage of 10 mg/L and 2 g/L, respectively. And 70.15 mg/g of equilibrium adsorption capacity of perchlorate could be reached at pH 5 and 298 K. pH had little effect on the removal rate of perchlorate, the removal rate surpassed 85 % over a wide pH range of 3.0–11.0. Multilayer adsorption (MLA), intraparticle diffusion (IPD), and adsorption on the active site (AOAS) models were employed to discuss the adsorption mechanism of perchlorate. It was confirmed that double-layer chemisorption played a dominant role. Density functional theory (DFT) analysis of binding energy revealed the effect of functional groups on the ClO4− adsorption strength in the order of –NH3+ > –COOH > –NH2 > –OH. Furthermore, electrostatic potential and the independent gradient model confirmed that electrostatic interactions, hydrogen bonding, and van der Waals forces contributed to the highly efficient adsorption of perchlorate. These findings have a vital promoting effect on perchlorate removal technology in water treatment. Moreover, the loofah-like CTS/SA-m aerogel material, exhibiting outstanding performance, shows great potential in effectively in trapping perchlorate anions from aquatic systems.