The stable and safe operation of highway/railway lines is largely dependent on the dynamic behavior of subgrade fillings. Clay soils are widely used in subgrade construction and are compacted at different remolding water contents and compaction degrees, depending on the field conditions. As a result, their dynamic behaviors may vary, which have not been fully investigated until now. To clarify this aspect, a series of cyclic triaxial tests were carried out in this study with three typical remolding water contents (w = 19%, 24%, and 29%), corresponding to the optimum water content as well as its dry and wet sides, and two compaction degrees (Dc = 0.8 and 0.9), which were selected according to the field-testing data. Scanning electron microscopy (SEM) and mercury intrusion porosimetry (MIP) tests were also conducted on typical samples to investigate the corresponding soil fabric variations. The findings indicate the following: (a) The soil fabric at the optimum remolding water content and its dry side was characterized by a clay aggregate assembly with a bimodal pore size distribution. In contrast, the soil fabric on the wet side of the optimum water content consisted of dispersed clay particles with a unimodal pore size distribution. (b) As the compaction degree increased, to ensure the optimum water content and its dry side, large pores were compressed to make them smaller, while small pores remained unchanged. Comparatively, all the pores on the wet side were compressed to make them smaller. (c) For each compaction degree, as the remolding water content increased, a non-monotonic changing pattern was identified for both the permanent strain and resilient modulus; the permanent strain first decreased and then increased, while, for the resilient modulus, an initial increasing trend and then a decreasing trend were identified. In addition, a larger changing rate of the permanent strain (resilient modulus) was observed on the dry side, indicating a larger effect of the remolding water content. (d) For each remolding water content, as the compaction degree increased, the permanent strain exhibited a decreasing trend, but an increasing trend was identified for the resilient modulus. Moreover, the rate of change in the permanent strain (resilient modulus) on the dry side of the optimum water content was larger than that on the wet side. In contrast, the minimum rate of change was identified at the optimum water content. The obtained results allowed for the effects of the remolding water content and compaction degree on the dynamic behavior to be analyzed, and they helped guide the construction and maintenance of the subgrade.