In this numerical study, TELEMAC-3D and GAIA solvers were coupled to examine the three-dimensional (3D) flow and morphological changes in an alluvial channel due to sand mining. The 3D modeling approach enables a comprehensive analysis of the interactions between bed shear stress, velocity field, secondary flows, and turbulent kinetic energy that affect sediment transport processes near the mining pit. First, the numerical model was applied to two previous experimental studies on straight channels with mining and validated with their published data. Thereafter, model applications are demonstrated to a 180° curved channel with a mining pit at three different locations. The results indicate that the morphological changes in curved channels with a mining pit were relatively more asymmetrical in contrast to straight channels. The most severe bed degradation of 76.8% was observed at the outer bank downstream of the pit located at the end of 180° bend. The analysis of bed shear stress in the curved channel revealed higher values at the outer bank and lower values around the inner bank downstream of the pit location. Additionally, the presence of the mining pit had a significant impact on the structure and location of the secondary flow recirculation cell in the curved channel. The results indicate that turbulent kinetic energy increases significantly in the vicinity of the mining pit in both straight and curved channels. This increased turbulence due to bed topography may account for the enhanced secondary flow and sediment movement observed in the pit region.