Basal Resources Research Articles

Experimental N and P additions relieve stoichiometric constraints on organic matter flows through five stream food webs.

Human activities have dramatically altered global patterns of nitrogen (N) and phosphorus (P) availability. This pervasive nutrient pollution is changing basal resource quality in food webs, thereby affecting rates of biological productivity and the pathways of energy and material flow to higher trophic levels. Here, we investigate how the stoichiometric quality of basal resources modulates patterns of material flow through food webs by characterizing the effects of experimental N and P enrichment on the trophic basis of macroinvertebrate production and flows of dominant food resources to consumers in five detritus-based stream food webs. After a pre-treatment year, each stream received N and P at different concentrations for 2years, resulting in a unique dissolved N:P ratio (target range from 128:1 to 2:1) for each stream. We combined estimates of secondary production and gut contents analysis to calculate rates of material flow from basal resources to macroinvertebrate consumers in all five streams, during all 3years of study. Nutrient enrichment resulted in a 1.5× increase in basal resource flows to primary consumers, with the greatest increases from biofilms and wood. Flows of most basal resources were negatively related to resource C:P, indicating widespread P limitation in these detritus-based food webs. Nutrient enrichment resulted in a greater proportion of leaf litter, the dominant resource flow-pathway, being consumed by macroinvertebrates, with that proportion increasing with decreasing leaf litter C:P. However, the increase in efficiency with which basal resources were channelled into metazoan food webs was not propagated to macroinvertebrate predators, as flows of prey did not systematically increase following enrichment and were unrelated to basal resource flows. This study suggests that ongoing global increases in N and P supply will increase organic matter flows to metazoan food webs in detritus-based ecosystems by reducing stoichiometric constraints at basal trophic levels. However, the extent to which those flows are propagated to the highest trophic levels likely depends on responses of individual prey taxa and their relative susceptibility to predation.

Early evidences of niche shifts in estuarine fishes following one of the world's largest mining dam disasters

The Fundão dam collapse occurred on November 2015 in Mariana city (Brazil), provoking a series of ecological impacts over the Doce river basin and its nearshore environment. However many impacts over fishery target fauna (fish and shrimp) are still unknown or underestimated due to the lack of baseline data in the region. In the present study we assessed the isotopic niches modeled from δ13C and δ15N signatures of six estuarine fish species before and after the impact to assign potential shifts at the population- and community-level. We showed isotopic niche has altered in all studied species irrespective of its trophic group and habitat use. Niche community metrics indicated a depletion of trophic diversity and basal resources of the whole community after the impact. Food web changes as we reported here can impair the energy transfer through the food chain and put at risk the sustainability of small fisheries that rely upon local resources.

Putting the lake back together 20 years later: what in the benthos have we learned about habitat linkages in lakes?

ABSTRACT Our understanding of lake ecosystems has undergone a paradigm shift over the past few decades. While the classic tradition in limnology has been the study of planktonic, open-water habitats, a shift toward integrative and cross-habitat watershed and whole-lake perspectives has occurred. This change in perspective integrates the role of terrestrial organic matter and littoral/benthic productivity into a general recognition of multiple basal resources and consumer-mediated habitat coupling in lakes. In light of this evolving paradigm, we address 4 broad questions relating to the role of benthic productivity and food web pathways in lakes. Specifically we ask: (1) What is the contribution of attached algae to whole-lake primary production? (2) Are attached algae an important basal resource for consumers? (3) What are the roles of benthic habitats and resources in supporting lake biodiversity? (4) What is the role of lake benthic pathways in aquatic–terrestrial linkages? While this paper focuses on the role of benthic productivity in lake food webs, it reflects a larger movement toward a more integrated and holistic understanding of lake ecosystems. Recognizing the magnitude and implications of aquatic habitat coupling is necessary to understand and conserve these globally important ecosystems in our current era of unprecedented global environmental change.

Fatty acids elucidate sub-Antarctic stream benthic food web dynamics invaded by the North American beaver (Castor canadensis)

Despite being remote, polar and sub-polar regions are increasingly threatened by global ecological change. For instance, South America’s sub-Antarctic forest ecoregion is considered one of the world’s last wilderness areas and a global reference site for pre-Industrial Revolution nutrient cycles. Nonetheless, the North American beaver (Castor canadensis) was introduced to Tierra del Fuego in 1946 and, as an invasive ecosystem engineer, has transformed the ecology of regional watersheds. Beavers’ engineering activities transform forested streams (FS) into beaver ponds (BP), where there is greater light and primary production (allochthonous organic matter) and, consequently, increased basal resource quality. To investigate this, we analyzed algal, diatom, fungal and bacterial fatty acid (FA) biomarkers in three basal resource categories (biofilm, very fine benthic organic matter, coarse benthic organic matter) and benthic consumers from four functional feeding groups (FFG). The amphipod Hyalella spp. was chosen as an indicator species due to its abundance and biomass in both habitats. Hyalella spp. had higher proportions of algal and bacterial FA in BP than FS. In FS, Hyalella spp. (gatherer) and Gigantodax spp. (filterer, Diptera) had greater contributions of higher quality FA (higher in polyunsaturated FA), while Rheochorema magallanicum (predator, Trichoptera) and Meridialaris spp. (scraper, Ephemeroptera) showed lower quality monounsaturated and saturated FA. All FFGs showed evidence of microbial FA and had higher levels of autochthonous FA biomarkers than their food resources. Scrapers had the greatest proportion of autochthonous FA. These data provide new insights into the utilization of basal resources by stream consumers in sub-Antarctic streams and how beavers modify these ecosystems.

New insights into the role of nutrient cycling in food web dynamics

Nutrient cycling is fundamental to ecosystem functioning. Despite recent major advances in the understanding of complex food web dynamics, food web models have so far generally ignored nutrient cycling. However, nutrient cycling is expected to strongly impact food web stability and functioning. To make up for this gap, we built an allometric and size structured food web model including nutrient cycling. By releasing mineral nutrients, recycling increases the availability of limiting resources for primary producers and links each trophic level to the bottom of food webs. We found that nutrient cycling can provide a significant part of the total nutrient supply of the food web, leading to a strong enrichment effect that promotes species persistence in nutrient poor ecosystems but leads to a paradox of enrichment at high nutrient inputs. The presence of recycling loops linking each trophic level to the basal resources weakly affects species biomass temporal variability in the food web. Recycling loops tend to slightly dampen the destabilising effect of nutrient enrichment on consumer temporal variability while they have opposite effects for primary producers. By considering nutrient cycling, this new model improves our understanding of the response of food webs to nutrient availability and opens perspectives to better link studies on food web dynamics and ecosystem functioning.

Invertebrates and the complexity of tropical ecosystems

AbstractIt has been estimated that there are seven million terrestrial arthropod species on Earth consisting of 6.1 million species of insects, 1.5 million of which are beetles. Tropical forests hold a majority of these species, yet few such places have been adequately sampled for alpha diversity, and there remains even more uncertainty about beta diversity. From an ecological point of view, it is the functional role of organisms within ecosystems that is the particular focus. It has been customary to classify invertebrates within ecosystems in terms of their trophic roles, but it is also useful to consider their roles in networks. In broad terms, we can classify these networks on the grounds of their basal resources. Those based directly on the photosynthetic products of plants are so‐called “green” food webs, and those based on dead and dying plant material are “brown” food webs. Here, we principally discuss the diversity and functional roles of the invertebrates in tropical terrestrial ecosystems. New sampling and analytical techniques, an expanded set of focal taxa, and an enhanced concern with interactions and processes hold the promise of a productive future for invertebrate studies in the tropics. These will not only add to general understanding of the dynamics of tropical ecosystems but will also provide powerful tools for monitoring and responding to environmental change.

Changes in nutritional quality and nutrient limitation regimes of phytoplankton in response to declining N deposition in mountain lakes

Phytoplankton play a key role in supporting aquatic food webs. However, the effects of ongoing large-scale changes in the concentrations and stoichiometry of important biological compounds [dissolved inorganic N (DIN), total phosphorus (TP), dissolved organic carbon (DOC) and DIN:TP] on the development and nutritional quality of phytoplankton for higher trophic levels are unclear. We conducted lake studies and in situ bioassay experiments in two Swedish mountain regions [Abisko (north) and Jämtland (south)] with different N deposition and where lakes in each region were distributed along a similar gradient in lake DOC (2–7 mg L−1) to assess whether differences in nutrients, DOC and DIN:TP induced differences in phytoplankton quantity [chlorophyll a (Chl-a) and seston carbon (C)] and quality [seston C:N:P stoichiometry and fatty acid (FA) composition]. Using long-term monitoring data from lakes in these two mountain regions, we found declining long-term trends in N deposition and lake DIN and total TP concentrations, but not in lake DIN:TP. Lakes in Abisko received lower N deposition and had lower DIN:TP than those in Jämtland. Phytoplankton was N- to NP-limited in Abisko lakes but NP dual-limited in Jämtland lakes. The N fertilization effects induced by higher DIN:TP were weak on phytoplankton quantity but strong on phytoplankton quality. The phytoplankton had lower eicosapentaenoic acid (EPA) content and higher P content (lower seston C:P) in Abisko compared to in Jämtland. In addition, the quality of the DOC (as indicated by its aromaticity and SUVA) influenced not only the light conditions and the seston C:P ratios, but also the FA composition. We found higher bacteria FA concentrations in seston in Abisko than in Jämtland, despite lower amounts of FA of terrestrial origin in Abisko. Our findings suggest that declining N deposition and enhanced colored terrestrial C loadings leads to lower nutritional quality of basal resources for higher consumers in mountain lakes.

Risk of bird predation and defoliating insect abundance are greater in urban forest fragments than street trees

Predation by natural enemies is important for regulating herbivore abundance and herbivory. Theory predicts that complex habitats support more natural enemies, which exert top-down control over arthropods and therefore can reduce herbivory. However, it is unclear if theory developed in other more natural systems similarly apply to predation by vertebrate and invertebrate natural enemies across urban habitats of varying complexity. We used plasticine caterpillar models to assess risk of predation by birds and insects, collected leaf-feeding arthropods, and measured herbivory in willow oak trees (Quercus phellos) in two seasons to determine how predation influenced herbivory across urban forest fragments, street trees planted near forest fragments, and downtown street trees. Predation attempts by birds and abundance of chewing folivores were greater on trees growing in urban forest fragments than downtown street trees. Bird predation attempts and herbivory levels were inconsistent for near-forest trees. Predation attempts by arthropods did not statistically vary among the three urban tree habitats. Contrary to expectations based on theory, chewing folivore abundance and herbivory were generally highest on trees growing in urban forests, the most complex habitat we studied, and the habitat where risk of bird predation was greatest. We suggest that urban forest fragments provide better habitat than other urban landscapes for both urban birds and chewing folivores by having greater habitat complexity. Therefore, basal resources, such as availability of suitable habitat, mediate top-down effects on herbivores in cities.

Environment and food web structure interact to alter the trophic magnification of persistent chemicals across river ecosystems

Legacy organic pollutants persist in freshwater environments, but there is limited understanding of how their trophic transfer and effects vary across riverine ecosystems with different land use, biological communities and food webs. Here, we investigated the trophic magnification of polybrominated diphenyl ethers (PBDEs), polychlorinated biphenyls (PCBs) and a suite of organochlorines (OCs) across nine riverine food webs in contrasting hydrological catchments across South Wales (United Kingdom). Pollutants biomagnified through the food webs in all catchments studied, in some cases reaching levels sufficient for biological effects on invertebrates, fish and river birds such as the Dipper (Cinclus cinclus). Trophic magnification differed across food webs depending on pollutant characteristics (e.g. octanol-water partitioning coefficient) and site-specific environmental conditions (e.g. land use, water chemistry and basal resource composition). The trophic magnification of PBDEs, PCBs and OCs also reflected food-web structure, with greater accumulation in more connected food webs with more generalist taxa. These data highlight interactions between pollutant properties, environmental conditions and biological network structure in the transfer and biomagnification of POPs in river ecosystems. We advocate the need for further investigations of system-specific transfers of contaminants through aquatic food webs as these factors appear to have important implications for risk assessment.

Seasonal dynamics of midwater zooplankton and relation to particle cycling in the North Pacific Subtropical Gyre

Midwater zooplankton are major agents of biogeochemical transformation in the open ocean; however their characteristics and activity remain poorly known. Here we evaluate midwater zooplankton biomass, amino acid (AA)-specific stable isotope composition (δ15N values) using compound-specific isotope analysis of amino acids (CSIA-AA), trophic position, and elemental composition in the North Pacific Subtropical Gyre (NPSG). We focus on zooplankton collected in the winter, spring, and summer to evaluate midwater trophic dynamics over a seasonal cycle. For the first time we find that midwater zooplankton respond strongly to seasonal changes in production and export in the NPSG. In summer, when export from the euphotic zone is elevated and this ‘summer pulse’ material is transported rapidly to depth, CSIA-AA indicates that large particles (>53 μm) dominate the food web base for zooplankton throughout the midwaters, and to a large extent even into the upper bathypelagic zone. In winter, when export is low, zooplankton in the mid-mesopelagic zone continue to rely on large particle basal resources, but resident zooplankton in the lower mesopelagic and upper bathypelagic zones switch to include smaller particles (0.7–53 μm) in their food web base, or even a subset of the small particle pool. Midwater zooplankton migration patterns also vary with season, with migrants distributed more evenly at night through the euphotic zone in summer as compared to being more compressed in the upper mixed layer in winter. Deeper zooplankton migration within the mesopelagic zone is also reduced in late summer, likely due to the increased magnitude of large particle material available at depth during this season. Our observed seasonal change in activity and trophic dynamics drives modestly greater biomass in summer than winter through the mesopelagic zone. In contrast midwater zooplankton carbon (C), nitrogen (N), and phosphorus (P) composition does not change with season. Instead we find increasing C:N, C:P, and N:P ratios with greater depths, likely due to decreases in proteinaceous structures and organic P compounds and increases in storage lipids with depth. Our study highlights the importance and diversity of feeding strategies for small zooplankton in NPSG midwaters. Many small zooplankton, such as oncaeid and oithonid copepods, are able to access small particle resources at depth and may be an important trophic link between the microbial loop and deep dwelling micronekton species that also rely on small particle-based food webs. Our observed midwater zooplankton trophic response to export-driven variation in the particle field at depth has important implications for midwater metabolism and the export of C to the deep sea.

Low‐level dissolved organic carbon subsidies drive a trophic upsurge in a boreal stream

Abstract Energy pathways in stream food webs are often driven by allochthonous basal resources. However, allochthonous dissolved organic carbon (DOC) is generally viewed as a minor if not insignificant basal resource because much of the DOC pool comprises high molecular weight, recalcitrant compounds and is inefficiently incorporated into biomass. Nevertheless, there is increasing evidence that the relatively small, labile fraction of DOC may indeed fuel microbial activity to a level that stimulates productivity across multiple trophic levels, resulting in a trophic upsurge. Here, we tested the trophic upsurge hypothesis by subsidising the labile DOC pool of an Alaskan boreal stream that had relatively high nutrient availability but low levels of naturally occurring DOC. We continuously added ecologically relevant (0.250 mg C/L, c. 10% increase above ambient bulk DOC) concentrations of labile DOC (acetate‐C) for 62 days to a treatment reach that was statistically indistinguishable in its channel form and chemistry from an upstream reference reach. We measured responses of periphyton production and biomass, whole reach metabolism and nutrient uptake, benthic invertebrate abundances, and juvenile salmonid (Dolly Varden, Salvelinus malma) abundance and growth. Measurements of basal ecosystem responses collectively indicated increased energy mobilization at the base of the food web in response to labile DOC addition. Periphyton bacterial production in the treatment reach was generally >1.5× reference reach values, and periphyton ash‐free dry mass, chlorophyll‐a, and chlorophyll‐a:ash‐free dry mass were all greater in the treatment reach by the end of the study. Throughout dosing, ecosystem respiration was 1.3× greater in the treatment reach and dissolved inorganic nitrogen uptake was greater in the treatment reach on eight out of nine measurements. Benthic invertebrate counts, dominated by Baetis spp. and Chironomidae, were c. 4× greater after 28 dosing days and c. 8× greater after 56 days in the upstream portion of the treatment reach. Abundance generally declined with increasing distance from the dosing station. Dolly Varden fry and parr age classes were nearly 2× more abundant in the upstream portion of the treatment reach than in any section of the reference reach and also declined with increasing distance from the dosing station. Further, Dolly Varden tagged with passive integrated transponders prior to the experiment had significantly higher instantaneous growth rates in the treatment reach than those recaptured in the reference reach. The strong consumer responses to small quantities of labile DOC mirrored significant treatment reach increases in basal ecosystem function and therefore demonstrated a response consistent with a trophic upsurge. Terrestrial DOC has historically been viewed as contributing little to metazoan consumers, instead modulating the influence of nutrients and being respired out of a disconnected microbial loop. Because we dosed the treatment reach with a relevant concentration of labile DOC, based on measurements in nearby peatland‐draining streams, we suggest that terrestrial DOC deserves more attention as a basal resource for whole food webs, akin to nutrients fuelling green (autochthonous) pathways.

Temperature and nutrient effects on the relative importance of brown and green pathways for stream ecosystem functioning: A mesocosm approach

AbstractIn addition to global warming, aquatic ecosystems are currently facing multiple global changes among which include changes in nitrogen (N) loads. While several studies have investigated both temperature and N impacts on aquatic ecosystems independently, knowledge on their interactive effects remains scarce.In forested headwater streams, decomposition of leaf litter represents the main process ensuring the transfer of nutrients and energy to higher trophic levels, followed by autochthonous primary production, mainly ensured by phototrophic biofilms. The main aim of this study was to disentangle the independent and combined effects of temperature increase and nutrient availability on the relative importance of brown and green processes involved in stream functioning. We hypothesised that water temperature and nutrients would lead to a general increase in leaf‐litter decomposition and primary production, but that the intensity of these effects would be largely modulated by competitive interactions arising between microorganisms as well as by the top‐down control of microorganisms by macro‐invertebrates. Macro‐invertebrates would, in turn, be bottom‐up controlled by microbial resources quality.To test these hypotheses, we conducted a 56‐day experiment in artificial streams containing leaf litter, microbial decomposers and biofilm inoculum, and an assemblage of macro‐invertebrates. Two water inorganic N:phosphorus (P) ratios (33 and 100, molar ratios) and two temperatures (ambient, +2°C) were manipulated, each treatment being replicated three times. Fungal and biofilm growth as well as leaf‐litter decomposition and primary production were quantified. Top‐down impacts of invertebrate primary consumers on brown and green compartments were evaluated using exclosures while bottom‐up control was evaluated through the measurement of resource stoichiometry and fatty acid profiles, as well as quantification of macro‐invertebrate growth and survival.Contrary to expectations, microbial decomposition was not significantly stimulated by nutrient or temperature manipulations, while primary production was only improved under ambient temperature. In the + 2°C treatment with high N:P, greater biofilm biomass was associated with lower fungal development, which indicates competition for nutrients in these conditions. Temperature increased macro‐invertebrate growth and leaf‐litter consumption, but this effect was independent of any improvement of basal resource quality, suggesting that temperature mediated changes in consumer metabolism and activity was the main mechanism involved.Most of our hypotheses that were based on simplified laboratory observations have been rejected in our semi‐controlled mesocosms. Our study suggests that the complexity of biological communities might greatly affect the response of ecosystems to multiple stressors, and that interactions between organisms must be explicitly taken into account when investigating the impacts of global change on ecosystem functioning.

Food web pathways for fish communities in small tropical streams

Abstract It is often assumed that invertebrate consumers in small tropical streams are dependent on allochthonous sources, although recent studies indicate that algae can form the base of food webs in tropical streams. Fish in tropical streams can feed across several trophic levels and the origin and path of energy and nutrient flow is uncertain for many species. We collected fish, insects, periphyton, and leaf litter from 20 streams across four Atlantic Forest catchments. We analysed stomach contents of fish to define trophic guild and fish dietary trophic position. We also analysed stable isotopes of carbon and nitrogen of fish and their resources to identify the main basal resources of the food web and to estimate trophic positions and identify the path of energy flow. We found that autochthonous sources were the primary resource base for fish communities. Trophic positions estimated from diet and isotopes were similar and correlated for insectivore and algivore–insectivore fish, but not for algivore–detritivore or omnivore fish. Using path analysis, fish classified as algivore–detritivores appear to have derived their biomass through a diet of primary consumer insects and periphytic algae and thus, are more likely to play a trophic role as algivore–insectivores in these streams. However, omnivores probably derived much of their biomass from aquatic insects. Our findings support other studies of tropical systems in which the main basal resource is autochthonous, even in small streams. We also show that the assignment to a specific trophic guild for some fish species, based on gut contents, does not reflect what they assimilate into their bodies. In some species, food sources that are uncommon can make a disproportionately important contribution to their biomass. This study affirms the important role of inconspicuous algal resources in aquatic food webs, even in small forested streams, and demonstrates the effectiveness of taking a combined approach of diet analysis, isotopic tracing, and modelling to resolve food web pathways where the level of omnivory is high.

First study of food webs in a large glacial river: the trophic role of invasive trout

Abstract The aim of this study was to determine the food webs structure of a large Patagonian river in two river sections (Upstream and Midstream) and to evaluate isotopic overlap between native and introduced species. We used stable isotope analyses of δ15N and δ13C and stomach content. The Upstream section had a more complex food webs structure with a greater richness of macroinvertebrates and fish species than Midstream. Upstream basal resources were dominated by filamentous algae. Lake Trout were found to have a higher trophic position than all other fish species in that area although, the most abundant fish species, were Rainbow Trout. Depending on the life stage, Rainbow Trout shifted from prey to competitor/predator. In the Midstream section, the base of the food webs was dominated by coarse particulate organic matter, and adult Rainbow Trout had the highest trophic level. Isotopic values changed among macroinvertebrates and fish for both areas. The two most abundant native and invasive species — Puyen and Rainbow Trout — showed an isotopic separation in Midstream but did not in Upstream areas. The presence of invasive fish that occupy top trophic levels can have a significant impact on native fish populations that have great ecological importance in the region.

Green macroalgae blooms (Ulva spp.) influence trophic ecology of juvenile flatfish differently in sandy beach nurseries

Opportunistic green macroalgae blooms increasingly affect coastal areas worldwide. Understanding their impacts on organisms that use this zone, such as juvenile flatfish, is critical. By combining stable isotope data, digestive tract contents and community analyses of flatfish and their potential prey (benthic macroinvertebrates) from two North-East Atlantic sandy beaches (one impacted by blooms and one not), we detected similar and species-specific trophic changes among three co-occurring species (sand sole, plaice and turbot). Across flatfish species, juveniles displayed more opportunistic foraging behavior at the impacted site. Differently, plaice and sand sole relied more on the additional basal resource (Ulva spp.) than turbot. Finally, sand sole and turbot presented a stronger diet shift at the impacted site than plaice. We hypothesize that the species-specific response to the blooms are mostly driven by how the flatfish detect their prey (using visual and/or chemical cues) and when they forage (diurnal or nocturnal foraging).

Mechanisms of trophic niche compression: Evidence from landscape disturbance.

Natural and anthropogenic disturbances commonly alter patterns of biodiversity and ecosystem functioning. However, how networks of interacting species respond to these changes remains poorly understood. We described aquatic food webs using invertebrate and fish community composition, functional traits and stable isotopes from twelve agricultural streams along a landscape disturbance gradient. We predicted that excessive deposition of fine inorganic sediment (sedimentation) associated with agricultural activities would negatively influence aquatic trophic diversity (e.g. reduced vertical and horizontal trophic niche breadths). We hypothesized that multiple mechanisms might cause trophic niche 'compression', as indicated by changes in realized trophic roles. Food-web properties based on consumer stable isotope data (δ13 C and δ15 N) showed that increasing sediment disturbance was associated with reduced trophic diversity. In particular, the aquatic invertebrate community occupied a smaller area in isotopic niche space along the sedimentation gradient that was best explained by a narrowing of the invertebrate community δ13 C range. Decreased niche partitioning, driven by increasing habitat homogeneity, environmental filtering and resource scarcity all seemingly lead to greater trophic equivalency caused by the collapse of the autochthonous food-web channel. Bayesian mixing-model analyses supported this contention with invertebrate consumers increasingly reliant on detritus along the sedimentation gradient, and predatory invertebrates relying more on the prey using these basal resources. The narrowing of the fish community δ13 C range along the sedimentation gradient contributed to an apparent 'trophic shift' towards terrestrial carbon, further indicating the loss of the autochthonous food-web channel. On the vertical trophic niche axis, fish became increasingly separated from aquatic invertebrates with an increase in their estimated trophic position. In combination, these responses were most likely mediated through reduced fish densities and a diminished reliance on aquatic prey. Although species losses remain a major threat to ecosystem integrity, the functional roles of biota that persist dictate how food webs and ecosystem functioning respond to environmental change. Sedimentation was associated with nonlinear reductions in trophic diversity which could affect the functioning and stability of aquatic ecosystems. Our study helps explain how multiple mechanisms may radically reshape food-web properties in response to this type of disturbance.

Assessment of food web recovery following restoration using resource niche metrics

The primary goal of habitat restoration is to recover the ecological structure, function, and services of natural ecosystems lost due to disturbance. Post-restoration success typically focuses on the return of a desired habitat type, consumer species composition, or abundance relative to a reference site. However, how energy flow responds to habitat restoration has not been widely studied, and there is a need to develop a better understanding of how energy flows through a restored vs reference ecosystem following restoration. We tested recently developed niche metrics as a tool to assess the degree of recovery of ecosystem energy flow and evaluate the success of habitat restoration. Using published stable isotope values from six systems, one to three years post-restoration, we used Bayesian mixing models to quantify resource use by consumers to generate food web hypervolumes for restored and reference habitats in each ecosystem and to quantify similarity in resource use between restored and reference systems. Our analysis showed that there were differences in restoration success at each restoration project between the restored and reference food webs, but two general patterns emerged in the early stages following restoration. Restoration efforts that restore biogenic habitats display lower levels of recovery of food web function than those that only restore abiotic habitat structural. Restoration increases the variability in basal resource use of consumers in food webs that rely heavily on one basal resource, while in food webs that relied on multiple basal resources consumers decrease variability in basal resource use. Our results demonstrate that hypervolume analysis is a powerful tool that can be used to quantify energy flow, the recovery of food web function, and measure restoration success.

Role of benthic habitat structure and riverine connectivity in controlling the spatial distribution and ecology of estuarine fish

Estuaries are among the most productive ecosystems per unit area, but this productivity is unevenly distributed across a complex mosaic of habitats. Identifying the qualities of different habitats that influence the composition and productivity of biotic communities is fundamental to understanding the dynamics of these ecosystems. We combined field surveys, hydrological modelling and stable isotope analysis to understand the roles of habitat, hydrological connectivity, salinity and temperature in determining assemblage composition, species abundance and trophic ecology of an estuarine fish community. Hydrodynamics, vegetation matrices of macroalgae and seagrass and the presence of epiphytes on vegetation explained spatial patterns in taxonomic biodiversity, multivariate assemblage structure and the occurrence of juvenile black bream Acanthopagrus butcheri, a species that possesses ecological traits common tomany demersal estuarine fish species. Juvenile bream abundance was related to vegetation composition (particularly epiphyte presence), supporting the hypothesis that juvenile habitats that provided resources or conditions that ex - tended beyond just structure conferredmore ecological advantages. This was further evidenced by stable isotope-based estimates of basal resource contributions of epiphytes. Our findings suggest that hydrodynamic connectivity with riverine water masses acts as a coarse determinant for estuarine fish communities at large spatial scales. At smaller scales, habitat-level associations influence local abundances and the identity and importance of specific trophic resources. Coupling hydro - dynamic modellingwith natural biomarkers provides a powerful approach for assessing the spatial context of habitat use that can help resource managers prioritize monitoring and habitat preservation efforts for coastal fish communities in a changing global environment.

Habitat loss and fragmentation increase realized predator–prey body size ratios

Abstract In the absence of predators, habitat fragmentation favours large body sizes to facilitate gap crossing. The size of primary consumers is, however, also shaped by top‐down effects as predators select prey of a certain size. Therefore, higher trophic levels should be taken into consideration when studying the effect of habitat loss and fragmentation on size distributions of herbivores. We built a model to study the effect of habitat loss and fragmentation within a tri‐trophic food chain. Body size is directly linked to movement capacity and metabolic processes and considered as a master trait under selection. We show that basal resources accumulate locally if a predator causes top‐down control of the herbivore. Due to this increasing spatiotemporal variability in resource availability, larger herbivores are selected than in scenarios without predator as they are able to move further. As predators cause herbivores to be intrinsically much larger than the optimal sizes selected by habitat fragmentation in the absence of predators, habitat fragmentation is no longer a significant driver of herbivore size. However, there is selection for increased predator size with habitat fragmentation as herbivores become less abundant, hence favouring gap‐crossing ability of the predator. Since herbivore and predator body size respond differently to habitat loss and fragmentation, realized predator–herbivore body size ratios increase along this fragmentation gradient. Our model demonstrates how feedbacks between the abundance, body size and mobility of predators and prey ultimately determine body size distributions in food webs. These new insights shed light on the impact of habitat destruction and fragmentation on overall food web structure. A free Plain Language Summary can be found within the Supporting Information of this article.

Shift in trophic niches of soil microarthropods with conversion of tropical rainforest into plantations as indicated by stable isotopes (15N, 13C).

Land-use change is threatening biodiversity worldwide, affecting above and below ground animal communities by altering their trophic niches. However, shifts in trophic niches with changes in land use are little studied and this applies in particular to belowground animals. Oribatid mites are among the most abundant soil animals, involved in decomposition processes and nutrient cycling. We analyzed shifts in trophic niches of six soil-living oribatid mite species with the conversion of lowland secondary rainforest into plantation systems of different land-use intensity (jungle rubber, rubber and oil palm monoculture plantation) in two regions of southwest Sumatra, Indonesia. We measured stable isotope ratios (13C/12C and 15N/14N) of single oribatid mite individuals and calculated shifts in stable isotope niches with changes in land use. Significant changes in stable isotope ratios in three of the six studied oribatid mite species indicated that these species shift their trophic niches with changes in land use. The trophic shift was either due to changes in trophic level (δ15N values), to changes in the use of basal resources (δ13C values) or to changes in both. The trophic shift generally was most pronounced between more natural systems (rainforest and jungle rubber) on one side and monoculture plantations systems (rubber and oil palm plantations) on the other, reflecting that the shifts were related to land-use intensity. Although trophic niches of the other three studied species did not differ significantly between land-use systems they followed a similar trend. Overall, the results suggest that colonization of very different ecosystems such as rainforest and intensively managed monoculture plantations by oribatid mite species likely is related to their ability to shift their trophic niches, i.e. to trophic plasticity.