Background: Studies carried out in the Niger Delta region of Nigeria have demonstrated a link between oil exploration and poor-quality drinking water. However, many of these studies have been limited by small coverage and focus on few parameters. This study thus aimed at a comprehensive assessment of the quality of public sources of drinking water in three gas flaring and three non-gas flaring communities in the Niger Delta region of Nigeria. Methods: A total of 13 samples were collected from the major sources of drinking water in six communities in Rivers, Bayelsa and Delta States, Nigeria. These were stored and transported in line with International standards to a certified environmental laboratory where physical, chemical, bacteriological and petro-chemical assessments were conducted for 27 parameters. Results: Some samples had a pH below the normal range for drinking water, with median pH value of 4.63. All chemical parameters assessed fell below the normal acceptable range with exception of magnesium which exceeded the acceptable range. There were11 samples (91.7%) with microbial contamination; total and faecal coliform demonstrated at values ranging between 15 and 90 most probably number (MPN)/100 ml for total coliform and 9 to 23 MPN/100 ml for faecal coliforms. Oil, grease and total petroleum hydrocarbons (TPH) were identified in water samples from all communities. Values for oil and grease ranged between <0.001 and 0.015 mg/l, while TPH values were between <0.001 and 0.046 mg/l. There was no significant difference between median values in gas flaring and non-gas flaring communities. Conclusion: Distortion of physico-chemical properties, and hydrocarbon and faecal contamination of drinking water are a major challenge in oil-bearing communities in the Niger Delta region of Nigeria irrespective of gas flaring status. This calls for urgent interventions to improve the quality of drinking water for the people of the Niger Delta.