Abstract Background Doxycycline post-exposure prophylaxis (doxy-PEP) effectively prevents bacterial sexually transmitted infections (STIs) but may increase antibiotic pressure. Little is known about longitudinal antibiotic use among men who have sex with men (MSM), a key population for doxy-PEP. Methods We analyzed data from a prospective cohort of MSM in Seattle, WA, from 2016-2018, prior to the introduction of doxy-PEP. Antibiotic use and reason for prescription were self-reported in weekly surveys and extracted from medical records. We characterized antibiotic use across 49 weeks of follow-up, stratified by specific antibiotics of interest and reasons for prescription. Incidence rates (IR) were calculated for the number of incident events of antibiotic initiation per 100 person-years (PY) at risk. We assessed factors associated with antibiotic initiation using negative binomial regression to estimate adjusted incidence rate ratios (IRRs). Results Among 140 participants, 68.6% (n=96) received at least one antibiotic during follow-up, resulting in an overall IR=264.5 events of antibiotic initiation per 100 PY and 1,696 total days of antibiotic use. STI treatment was the most common reason for antibiotic initiation (IR=153.5 events per 100 PY; 462 days); however, treatment for other conditions contributed most to overall days of antibiotic use (IR=42.6 events per 100 PY; 947 days). An age of 25-39 years (IRR=1.54; 95%CI: 1.02,2.32) and a history of bacterial STIs <12 months prior to enrollment (IRR=1.81; 95%CI: 1.12,2.93) were significantly associated with higher incidence of antibiotic initiation. Conclusions Antibiotic consumption among this population was very high. Our analysis provides a necessary foundation for assessing the potential impacts of doxy-PEP.
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