The efficient off-axis non-inductive current drive using auxiliary power is essential for the steady state operation of tokamaks. In previous studies, a helicon wave current drive has been proposed for high beta plasma in several fusion devices, and the 476-MHz radio-frequency (RF) system for the proposed helicon wave has been installed in KSTAR. However, multipactor discharge occurred inside the waveguide system, including the vacuum feedthrough (VFT), and it interrupted the normal RF propagation to plasma. Thus, for successful helicon wave current drive, suppressing the multipactor discharge in the waveguide system, including the 6–1/8″ coaxial type VFT and the newly manufactured helical type traveling wave antenna (TWA) is essential before installation in KSTAR. RF conditioning utilizing a short pulse modulation during a long period helps suppress the multipactor discharge, enabling the 1-MW 476-MHz RF to pass through the entire waveguide system despite the existence of multipactor discharge. Following RF conditioning in VFT with a short pulse modulation, the newly manufactured helical type TWA and VFT for helicon wave current drive have been successfully installed in KSTAR.