The majority of waste-heat energy exists in the form of low-grade heat (<100°C), which is immensely difficult to convert into usable energy using conventional energy-harvesting systems. Thermally regenerative electrochemical cycles (TREC), which integrate battery and thermal-energy-harvesting functionalities, have been considered an attractive system for low-grade heat harvesting. Herein, we investigate the role of structural vibration modes in enhancing the efficacy of TREC systems. We analyze how changes in bonding covalency, influenced by the amount of structural water molecules, impact the vibration modes. We discover that even small amounts of water molecules can induce the A1g stretching mode of cyanide ligands with strong structural vibration energy, which significantly contributes to a larger temperature coefficient (ɑ) in a TREC system. Leveraging these insights, we have designed and implemented a highly efficient TREC system using a sodium-ion-based aqueous electrolyte. Our study provides valuable insights into the potential of TREC systems, offering a deeper understanding of the intrinsic properties of Prussian Blue analogues (PBAs) regulated by structural vibration modes. These insights open up new possibilities for enhancing the energy-harvesting capabilities of TREC systems. This article is protected by copyright. All rights reserved.