Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy Research Articles

Attenuated Total Reflection-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Analysis of Saliva as a Diagnostic Specimen for Rapid Classification of Oral Squamous Cell Carcinoma Using Chemometrics Methods

Background & Aim Recent advancements in analytical techniques have highlighted the potential of Attenuated Total Reflection-Fourier Transform Infrared (ATR-FTIR) spectroscopy as a quick, cost-effective, non-invasive, and efficient tool for cancer diagnosis. This study aims to evaluate the effectiveness of ATR-FTIR spectroscopy in combination with supervised machine learning classification models for diagnosing OSCC using saliva samples. Methods & Materials Eighty unstimulated whole saliva samples from OSCC patients and healthy controls were collected. The ATR-FTIR spectroscopy was performed and spectral data were used to classify healthy and OSCC groups. The data were analyzed using machine learning classification methods such as Partial Least Squares-Discriminant Analysis (PLS-DA) and Support Vector Machine Classification (SVM-C). The classification performance of the models was evaluated by computing sensitivity, specificity, precision, and accuracy. Results The samples were classified into two classes based on their spectral data. The obtained results demonstrate a high level of accuracy in the prediction sets of the PLS-DA and SVM-C models, with accuracy values of 0.960 and 0.962, respectively. The OSCC group sensitivity values for both PLS-DA and SVM-C models was 1.00, respectively. Conclusion The study indicates that ATR-FTIR spectroscopy, combined with chemometrics, is a potential method for the non-invasive diagnosis of OSCC using saliva samples. This method achieved high accuracy and the findings of this study suggest that ATR-FTIR spectroscopy could be further developed for clinical applications in OSCC diagnosis.

CHANGES IN SECONDARY STRUCTURE OF PROTEIN IN SKELETAL MUSCLE DUE TO HIGH-CARBOHYDRATE OR HIGH-FAT DIETS

Objective: Obesity, which arises from changes in lifestyle and feeding habits, is a threat to human health. One essential contributor to the increase in obesity rates is the popularity of high-calorie diets. This study aims to investigate high-fat (HFD) and high-carbohydrate (HCD) diet-induced molecular changes in protein secondary structure in longissimus dorsi skeletal muscle tissues of female inbred C57BL/6J mice by utilizing Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy. Materials and Methods: Mice were fed a control diet, HCD, or HFD for 24 weeks. Their skeletal muscle tissues were collected, and their spectra were recorded using a Bruker Invenio S ATR-FTIR spectrometer in the 4000-400 cm-1 region. Results: The protein secondary structure profiles of the HCD group demonstrated a significant rise in antiparallel β-sheet and β-turn and a decline in parallel β-sheets together with the insignificant increase in aggregated β-sheets and a decrease in α-helix. The impact of an HFD on protein conformation is less pronounced than HCD. The HFD diet led to an increase in antiparallel β-sheets and a decrease in parallel β-sheets. Although it was not significant, an increase was observed in β-turn and α-helix. Conclusion: These results propose the appearance of protein aggregation and/or formation of protein-protein intermolecular interaction in skeletal muscle tissues of female inbred C57BL/6J mice. Collectively, these data suggest that both high-calorie diets impair secondary structures of protein in skeletal muscle that may affect its metabolic function.

Modulation of charge structure in Bi/Bi2O3-In2O3@C for efficient CO2 electroreduction to formate

Electrocatalytic CO2 reduction reaction (ECO2RR) to value-added chemicals is of significant importance to control CO2 emission and reach carbon neutrality. Herein, Bi/Bi2O3-In2O3@C electrocatalyst with nanosheet arrays is successfully fabricated by a facile solvothermal with subsequent calcination process. It is found that the electron structure of Bi/Bi2O3-In2O3@C can be adjusted by the synergistic effects of Bi-In hetero-diatoms, which can significantly enhance its inherent catalytic activity. As expected, it requires a maximum HCOOH faradaic efficiency (FEHCOOH) of 97.6 % at −1.1 V vs. Reversible Hydrogen Electrode (RHE), which further delivers over 90 % at a wide potential range of −0.8 to −1.4 V vs. RHE, and exhibits high stability of 90.1 % over 60-h long-term test. In-situ Raman analysis is performed to explore the mechanism of its excellent stability. Meanwhile, in-situ attenuated total reflection-Fourier-transform infrared (ATR-FTIR) analysis combined with theoretical calculations reveal that the hetero-bridging absorption of *OCHO and d-d orbital coupling effect can regulate d-band center of Bi/Bi2O3-In2O3@C and improve its density of states around Ef, moderating free energy of intermediates, thereby the improved formate production performance can be seen.

Biopolyurethane coatings with silica-titania microspheres (MICROSCAFS®) as functional filler for corrosion protection

In this work, we studied a biopolyurethane (BioPU) coating derived from a bio-based polyol and isocyanate for the protection of carbon steel against corrosion. The direct utilization of polyols obtained from raw biomass represents a novelty in polyurethane coatings production. The protective properties of these coatings were enhanced by incorporating unique silica-titania (ST) MICROSCAFS®, which are microspheres exhibiting interconnected macro- and mesoporosity. They were loaded with tannic acid (TA), an eco-friendly corrosion inhibitor. Confirmation of TA loading into the ST carriers (therefore called ST\\TA) was achieved through Attenuated total reflectance - Fourier-transform infrared spectroscopy (ATR-FTIR) and Thermogravimetric (TG) analyses. TG analysis revealed that ST\\TA particles contain approximately 34 wt% TA, and their average particle diameter is approximately 25 ± 5 μm, observed by SEM. The TGA shows slightly improved thermal resistance of the coatings modified with the filler MICROSCAFS®. Furthermore, it was observed that the fillers strengthened the coating hardness without negatively affecting the adhesion strength. Electrochemical Impedance Spectroscopy (EIS) results demonstrated that all modified coatings exhibited very good to excellent resistance in mild corrosive environments. The coatings maintained a high impedance modulus (|Z|) at low frequencies and phase angle values close to −90° across a wide frequency range, over an immersion period of 80 days in a 0.05 M NaCl solution. After 80 days of immersion, the best coating, BPU-ST\\TA, displayed |Z| of 3 × 1010 Ω cm2. Scanning Vibrating Electrode Technique (SVET) analysis revealed the inhibitory behaviour of TA. For the BPU-ST\\TA sample, inhibition of both anodic and cathodic activities was clearly visible, with a significant reduction of the current densities starting at 1 h and up to at least 24 h of immersion. In summary, the BioPU coatings modified with tannic acid-loaded MICROSCAFS® exhibit improved barrier properties and notable corrosion inhibition capacity in mild corrosive environments.

Microplastic-contamination in the flesh and gastrointestinal tract of nile tilapia (Oreochromis niloticus) reared in floating net cages at lake Ranu Grati, Pasuruan, East Java, Indonesia

In recent years, microplastics (MPs) have emerged as a prominent environmental problem in waters and environments, including lake waters. Microplastics in freshwater, such as those in floating net cages (FNC), can be consumed by Nile tilapia (Oreochromis niloticus), one of the commercially available cultivated fish in Indonesia. This study aims to determine the prevalence of microplastics and compare their characteristics in the surface water, flesh, and gastrointestinal tract (GIT) of Nile Tilapia (O. niloticus) at Lake Ranu Grati, Pasuruan, East Java, Indonesia. Visual characteristics of MPs were observed using a stereo microscope, and polymers were analysed by ATR-FTIR (Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy). The abundance of MPs from water sample locations in Lake Ranu Grati reached 1116 MPs particles. In the water samples, the inner and outer sides of the FNC are dominated by the MPs with a size range of 251–500 µm and 1001-2000 µm in the milieu of Ranu Grati Lake. The most common MPs' types and colours are fibre and black, dominated by Polyethylene (PE). In 25 O. niloticus samples, 576 particles of MPs were found in the flesh and 724 particles in the gastrointestinal tract (GIT). This study found no significant variation in microplastic abundance between flesh and GIT samples (p>0.05; Mann-Whitney U test). Microplastics in Nile Tilapia flesh samples were dominated by blue fibres with a size range of 101–250 µm, and the polymer found was PA (polyamide). Meanwhile, in the GIT samples, microplastics were dominated by black fibre, with a size range of 251–500 µm, and the polymer found was PA (polyamide).

The Application of Wood Biowaste Chemically Modified by Bi2O3 as a Sorbent Material for Wastewater Treatment

Textile dyes discharged into aquatic systems can have significant environmental impacts, causing water pollution and toxicity to aquatic life, and constituting a human health risk. To manage these effects, the sorption ability of wood biowaste chemically modified by Bi2O3 for textile dye removal was investigated. Sorbent characterization was performed using scanning electron microscopy, and elemental analysis by energy dispersive X-ray spectroscopy (SEM-EDX), X-ray diffraction (XRD), the Brunauer–Emmett–Teller (BET) method for the specific surface area, and Fourier transform infrared spectroscopy–attenuated total reflectance (FTIR-ATR). The optimization of the sorption process was carried out, and optimal parameters, such as contact time, pH, the dose of sorbent, the concentration of dye, and temperature, were defined. Also, desorption studies were conducted. Kinetics and isotherms studies were carried out, and the data fits to a pseudo-second order model (r2 ≥ 0.99) and Langmuir model (r2 ≥ 0.99), indicating that the process occurs in the monolayer form and the dye sorption depends on the active sites of the sorbent surface. The maximal sorption capacity of the sorbent was 434.75 mg/g.

Quantitative Analysis of the Li-Ion Solvation Structure in Li-Ion Battery Electrolytes Using ATR-FTIR Spectroscopy.

Attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy is widely used to study condensed materials due to its convenient sample preparation and ability to avoid absorption saturation. Recently, it has been applied to in situ and in operando observations of chemical reactions within electrochemical devices, such as lithium-ion batteries. However, because ATR-FTIR spectroscopy relies on frequency-dependent attenuated reflectance, quantitative concentration measurements of chemical species using the Beer-Lambert law are challenging. Despite the availability of several correction methods, discrepancies remain in the solvation structures around Li+ ions when comparing transmission-type FTIR and ATR-FTIR spectroscopy results, which complicate the determination of solvation and desolvation energies. In this study, we investigate ATR-FTIR correction algorithms, elucidate the reasons for the discrepancies between ATR-FTIR and transmission FTIR spectroscopy results, and develop a method to correct the ATR-FTIR spectrum to accurately determine the solvation structures around Li+ ions.

Amine-functionalized cellulose-silica composites for the remediation of hexavalent chromium (Cr IV) in contaminated water

Adsorption method for Hexavalent chromium (Cr(VI) removal from domestic and industrial wastewater is widely desirable due to public health concern of the heavy metal. The purpose of this study was to investigate the evaluation of Cr(VI) adsorption using a novel adsorbent: amine-functionalized cellulose-silica composite derived from banana fibers. We employed the in-situ sol–gel method to create cellulose-silica silane functionalized composites, analyzing them through different characterization techniques such as Attenuated total reflectance- Fourier transform infrared spectroscopy (ATR-FTIR), X-ray Diffraction Analysis (XRD), Thermo gravimetric analysis (TGA)/differential thermogravimetric (DTG), Brunauer–Emmett–Teller (BET), Scanning Electron Microscopy (SEM), and Transmission Electron Microscopy (TEM) techniques. ATR-FTIR depicted key organic constituents in raw banana pseudo stem fibers (BF) and the formation of SiO bonds in BCSiO2 composite, and further enhanced by the grafting of N-[3-(trimethoxysilyl)propyl ethylenediamine (DAPTMS) onto the BC-SiO2 surface in BC-SiO2-DAPTMS. XRD and TGA/DTG analyses revealed changes in crystallinity and thermal stability, while BET analysis showcased altered surface area and pore characteristics in BC-SiO2-DAPTMS (2 %). SEM and TEM imaging provided visual evidence of structural modifications and improved dispersion in BC-SiO2-DAPTMS composites. The impact of composite weight, contact time, and pH on Cr(VI) removal rates was examined, revealing optimal performance at slightly acidic pH 4 value (80.7 %) and enhanced efficiency with increased contact time of 65 min (86.66 %), composite weight of 1 g (82.62 %), and initial concentration was for 0.8 mg/l (80 %). The kinetics and isotherms analyzed using pseudo second order (PSO) and pseudo first order (PFO) models, highlight the composite’s efficiency. The Freundlich model was found to better fit the adsorption isotherm data, while the PSO model described the kinetics more accurately. These insights contribute to optimizing the BC-SiO2-DAPTMS (2 %) composite for efficient Cr(VI) ion removal in water treatment applications.

Development, Validation, and Greenness Assessment of HPLC and ATR-FTIR for Mangiferin Quantitative Analysis in Raw Material

Due to the benefits of mangiferin, including antidiabetic, antibacterial, antiviral, antioxidant, and anti-inflammatory activities, it is a natural raw material used in botanical health and cosmetic products. This research aims to develop and validate analytical methods for the quantification of mangiferin in raw material, isolated from Mangifera indica L. leaves, using high performance liquid chromatography (HPLC) and attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR). The greenness assessment of both analytical methods was performed. The results indicated that both methods were validated in terms of specificity, linearity, range, detection limit, quantitation limit, accuracy, and precision. The ranges of mangiferin used in HPLC and ATR-FTIR were 30 to 360 µg/mL and 5.00 to 27.27% w/w, respectively. The mangiferin content in five batches, analyzed by using the validated HPLC and ATR-FTIR, ranged from 88.35 to 109.4% w/w and 90.7 to 111.8% w/w, respectively. Statistical analysis using a paired t-test revealed no significant difference in the mangiferin quantity between the two techniques at a 95% confidence level. The greenness scores of the HPLC and ATR-FTIR determined according to AGREE metric were 0.49 and 0.81, respectively. Both methods can be applied to quantify mangiferin content and control the quality of mangiferin raw material. Additionally, the validated ATR-FTIR, which proposed excellent environmental friendliness, was suggested as an alternative analytical method for routine assay of mangiferin raw material.

PolyPyrrole based-impedimetric aptasensor for selective determination of beta-HCG from urine sample

Herein, a conjugated conducting polymer-based impedimetric aptasensor has been developed to detect beta-human chorionic gonadotropin (bHCG), the one of the important biomarkers in gynecology, from synthetic human urine samples. In this context, gold electrodes were, firstly coated with pyrrole and pyrrole-3-carboxylic acid to obtain the poly(pyrrole-pyrrole-3-carboxylic acid) [poly(Py-PyCOOH)] conductive copolymer by cyclic voltammetry (CV). Then, bHCG-specific peptide aptamer was covalently linked onto the surface via applying a well-known carbodiimide-succinimide chemistry. The sensor developed was characterized to confirm modification steps via both electrochemical methods including CV, electrochemical impedance spectroscopy (EIS), and chronoamperometry and physico-chemically via attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR), scanning electron microscopy (SEM), energy dispersive X-ray analysis (EDX), atomic force microscope (AFM), and contact angle measurements (CA). The analytical performance of the sensor was evaluated in the concentration range from 1 μg/mL to 100 μg/mL for successful detection of bHCG even in the presence of interference agents. The results have also revealed that the sensor could be classified as a promising alternative to its benchmark commercial clinical methods due its superior properties such as cost-friendliness, easy-to-prepare, stable, robust, and selectivity / sensitivity.

Green formulation of Menadione-loaded niosome as a skin-lightening preparation: In vitro/In vivo safety evaluation on Wistar rat

Purpose: In the present research, a green technique (an ultrasonic method) was used to synthesize menadione sodium bisulfite (MSB) niosome (Menasome) which is used to improve dermal delivery and increase anti-melanogenesis activities. Methods: Various cholesterol: surfactant (Chol: Sur) ratios were investigated to optimize the Menasomes. Photon correlation spectroscopy, attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR), transmission electron microscopy (TEM), and differential scanning calorimetry (DSC) were employed to characterize the solid state of MSB in nanoparticle form. Additionally, the optimized formulation was used to investigate ex-vivo skin absorption, in vivo skin irritation, in vitro cell survival, and anti-melanogenesis activity. Results: The results exhibited that increasing cholesterol (Chol) declined the average size of the Menasomes from 653.766±25.171 nm to 298.133±8.823 nm and increased entrapment efficiency 30.237±3.4204% to 83.616±2.550 %. The rat skin permeation study indicated that Menasome gel administered more MSB in dermal layers (439.000±36.190μg/cm2 or 23.827±1.964%) than MSB plain gel (286.200± 22.6μg/cm2 or 15.53±1.227%). In both the in vivo skin irritation test and the in vitro cytotoxicity experiment, the extended-release behavior of the enhanced Menasome demonstrated a minimal side effect profile. Furthermore, optimum Menasome inhibited melanin formation (37.426± 1.644% at 15μM) greater than free MSB (57.383±1.654%) considerably (p <0.05). Furthermore, Menasome 7 prevented L-dopa auto-oxidation in higher levels (95.140±2.439%) than pure MSB solution (83.953±1.629%). Conclusion: According to the study's findings, the prepared Menasome could be employed as a viable nanovehicle for MSB dermal delivery, a promising solution for the management of human hyperpigmentation disorders.

Determination of antioxidant capacity and phenolic content of haskap berries (Lonicera caerulea L.) by attenuated total reflectance-Fourier transformed-infrared spectroscopy

The total phenolic content (TPC) and antioxidant capacity (TAC) of haskap berries cultivated in various locations across Alberta were analyzed using attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy. The Folin–Ciocalteu assay was used to determine TPC, while TAC was quantified by 2,2-diphenyl-1-picrylhydrazl radicals (DPPH) assay and oxygen radical absorbance capacity (ORAC) assay. Three tenfold cross-validated partial least-squares regression (PLSR) models and three fivefold cross-validated deep learning models were developed separately based on FT-IR spectra collected from 22 haskap berry samples and their corresponding reference values determined through Folin-Ciocalteu, DPPH, and ORAC assays. The deep learning models (R2 = 0.95, 0.93, and 0.90 for Folin-Ciocalteu, DPPH, and ORAC assays, respectively) demonstrated better prediction capability compared to the PLSR models (R2 = 0.74, 0.72, and 0.66 for Folin-Ciocalteu, DPPH, and ORAC assays, respectively). In addition, PLS loading plots indicated that phenolic contents and polysaccharides in haskap berries could contribute to their antioxidant capacity. Using ATR-FTIR to estimate the TPC and TAC of fruits offers a rapid alternative to the conventional chemical assays.

The seaweed Chaetomorpha linum cultivated in an integrated multitrophic aquaculture system: A new tool for microplastic bioremediation?

Microplastics (MPs) are emerging pollutants with detrimental impacts on ecosystems and human health. Due to their adverse effects, new strategies to mitigate MP pollution in the marine environment need to be developed urgently. In this context, the capability of the seaweed Chaetomorpha linum (Chlorophyta, Cladophorales) to trap MPs, as well as the effectiveness of a simple washing procedure to clean up the harvested seaweed biomass, were investigated. This algal species was grown in an integrated multitrophic aquaculture system (IMTA), where bioremediator organisms such as macroalgae, polychaetes, sponges and mussels were farmed in the vicinity of the fish cages. MPs trapped in C. linum were classified based on shape and size, and representative samples of each shape were analysed by attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy to evaluate their chemical composition. Fibre MPs were the most abundant (97.3 %), while the size ranged from 0.025 to 2.00 mm, with most samples being in the size range 0.80–1.00 mm. MPs were composed mainly of polypropylene, polystyrene, and polyethylene. They were efficiently removed from the cultured seaweeds by a simple density separation procedure, consisting of three extractions with hypersaline solutions of sodium chloride. These results suggest that C. linum cultivated in an IMTA system can be proposed as a bioremediator to capture MPs from the surrounding environment. At the same time, harvested and cleaned green seaweeds may be considered a co-product of the bioremediation process and can find application in several biotechnological fields, including the use as a food source for human consumption.

Photochemical Origins of Iron Flocculation in Acid Mine Drainage.

Acid mine drainage (AMD) raises a global environmental concern impacting the iron cycle. Although the formation of Fe(III) minerals in AMD-impacted waters has previously been reported to be regulated by biological processes, the role of abiotic processes remains largely unknown. This study first reported that a photochemical reaction coupled with O2 significantly accelerated the formation of Fe(III) flocculates (i.e., schwertmannite) in the AMD, as evidenced by the comparison of samples from contaminated sites across different natural conditions at latitudes 24-29° N. Combined with experimental and modeling results, it is further discovered that the intramolecular oxidation of photogenerated Fe(II) with a five-coordinative pyramidal configuration (i.e., [(H2O)5Fe]2+) by O2 was the key in enhancing the photooxidation of Fe(II) in the simulated AMD. The in situ attenuated total reflectance-Fourier transform infrared spectrometry (ATR-FTIR), UV-vis spectroscopy, solvent substitution, and quantum yield analyses indicated that, acting as a precursor for flocculation, [(H2O)5Fe]2+ likely originated from both the dissolved and colloidal forms of Fe(III) through homogeneous and surface ligand-to-metal charge transfers. Density functional theory calculations and X-ray absorption spectroscopy results further suggested that the specific oxidation pathways of Fe(II) produced the highly reactive iron species and triggered the hydrolysis and formation of transient dihydroxo dimers. The proposed new pathways of Fe cycle are crucial in controlling the mobility of heavy metal anions in acidic waters and enhance the understanding of complicated iron biochemistry that is related to the fate of contaminants and nutrients.

Pyrolysis-gas chromatography/mass spectrometry analysis as a useful tool in identifying fibre composition in mixed post-consumer textile waste

The progress of textile recycling is significantly impeded by the absence of adequate methodologies for determining the composition of fibres in textile blends. The examination of textile mixtures poses considerable difficulties, particularly due to the presence of elastane fibres, which in their limited quantities cannot be easily detected using conventional analytical techniques. Further, the undetected elastane fibres pose difficulty in separation during recycling of the textiles as they end up as impurities in cases where dissolution of the fibres is employed. Consequently, it is of utmost importance to explore new analytical tools that possess the capability to identify the primary fibres in post-consumer waste. In the current investigation, we conducted a study to assess the capabilities of Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy (ATR-FTIR) and Pyrolysis coupled with Gas Chromatography and Mass Spectrometry (Py-GC/MS) for the characterization of postconsumer textile fabrics. A comprehensive pyrolysis database was established encompassing prevalent pure fibres commonly employed in textile production. In addition, an examination was conducted on three textile blends with predetermined compositions, and the findings were subsequently compared with data obtained through the utilization of ATR-FTIR. The data derived from the original fibres was ultimately utilized for the examination of post-consumer fabric samples acquired from a waste landfill. The utilization of Py-GC/MS, scanning electron microscopy (SEM) and ATR-FTIR enabled to discern fibre compositions of mixtures even those that contained relatively low fibre content.

β-glucans, SAM, and GSH fluctuations in barley anther tissue culture conditions affect regenerants’ DNA methylation and GPRE

BackgroundMicrospore embryogenesis is a process that produces doubled haploids in tissue culture environments and is widely used in cereal plants. The efficient production of green regenerants requires stresses that could be sensed at the level of glycolysis, followed by the Krebs cycle and electron transfer chain. The latter can be affected by Cu(II) ion concentration in the induction media acting as cofactors of biochemical reactions, indirectly influencing the production of glutathione (GSH) and S-adenosyl-L-methionine (SAM) and thereby affecting epigenetic mechanisms involving DNA methylation (demethylation—DM, de novo methylation—DNM). The conclusions mentioned were acquired from research on triticale regenerants, but there is no similar research on barley. In this way, the study looks at how DNM, DM, Cu(II), SAM, GSH, and β-glucan affect the ability of green plant regeneration efficiency (GPRE).ResultsThe experiment involved spring barley regenerants obtained through anther culture. Nine variants (trials) of induction media were created by adding copper (CuSO4: 0.1; 5; 10 µM) and silver salts (AgNO3: 0; 10; 60 µM), with varying incubation times for the anthers (21, 28, and 35 days). Changes in DNA methylation were estimated using the DArTseqMet molecular marker method, which also detects cytosine methylation.Phenotype variability in β-glucans, SAM and GSH induced by the nutrient treatments was assessed using tentative assignments based on the Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy. The effectiveness of green plant regeneration ranged from 0.1 to 2.91 plants per 100 plated anthers. The level of demethylation ranged from 7.61 to 32.29, while de novo methylation reached values ranging from 6.83 to 32.27. The paper demonstrates that the samples from specific in vitro conditions (trials) formed tight groups linked to the factors contributing to the two main components responsible for 55.05% of the variance (to the first component DNM, DM, to the second component GSH, β-glucans, Cu(II), GPRE).ConclusionsWe can conclude that in vitro tissue culture conditions affect biochemical levels, DNA methylation changes, and GPRE. Increasing Cu(II) concentration in the IM impacts the metabolism and DNA methylation, elevating GPRE. Thus, changing Cu(II) concentration in the IM is fair to expect to boost GPRE.

Development of small-diameter vascular grafts using PCL/PLA/gelatin/PVA/hyaluronic acid nanofibers containing VEGF/enoxaparin

The extending demands for narrow-diameter vascular grafts to restore damaged arteries have captivated researcher's attention. The absence of appropriate vascular substitutes is due to the poor patency rate of small-caliber synthetic grafts caused by thrombosis and vessel hemodynamic mismatch that induce intimal hyperplasia. We developed small-diameter vascular grafts in two layers through electrospinning. The inner layer was fabricated by gelatin/polyvinyl alcohol (PVA)/hyaluronic acid/enoxaparin and vascular endothelial growth factor (VEGFs) and the outer layer was manufactured via polycaprolactone (PCL)/polylactic acid (PLA)/hyaluronic acid. The products were characterized by atomic force microscope (AFM), scanning electron microscope (SEM), water contact angle (WCA), attenuated total reflectance-fourier transform infrared spectroscopy (ATR-FTIR), swelling test, mechanical test, and release rate. Blood compatibility tests including blood clotting time, hemolysis, and human platelet sedimentation were measured. The interactions of human umbilical vein endothelial cells (HUVECs) and human endometrial stem cells (hEnSCs) with nanofibrous vascular grafts were detected by SEM, viability assay, and DAPI staining. The results exhibited the produced small-diameter vascular grafts had proper antithrombotic properties due to two factors of VEGF and enoxaparin. After two months of the subcutaneous implantation of the scaffolds on the back of rats, the tubular vascular grafts lacked any macroscopic and histological signs of acute inflammation and had appropriate degradation rates. Furthermore, lumen patency was observed after 2 months. Consequently, VEGF and enoxaparin improves cell and blood compatibility in the small-diameter vascular grafts.

Characterization, mechanical, corrosion, and in vitro apatite-formation ability properties of hydroxyapatite-reduced graphene oxide coatings on Ti6Al4V alloy by plasma electrolytic oxidation

Hydroxyapatite-reduced graphene oxide (HA/rGO) nanocomposite coatings were developed on Ti6Al4V alloy using plasma electrolytic oxidation (PEO). The PEO electrolyte comprised calcium acetate (C4H6CaO4) and calcium glycerophosphate (C3H7O5CaP). Prior to integrating reduced graphene oxide into the coating solution, parameters such as voltage and current density were optimized using scanning electron microscopy (SEM). The influence of various current densities and graphene concentrations on coating properties was analyzed. Coating phase structures, surface morphologies, functional groups, and chemical compositions were characterized by X-ray diffraction (XRD), SEM, attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR), and energy dispersive spectroscopy (EDS). Raman spectroscopy confirmed the presence of graphene in the coatings. Surface morphology examinations revealed that surface cracks appeared at voltages above 350 V due to thermal stresses. Increasing current density reduced the number of porosities but increased pore size. Adding graphene to the solution to form HA/rGO coatings further decreased both the number and size of porosities. XRD analysis identified phases of titanium, anatase, rutile, titanium phosphide, tri-calcium phosphate (TCP), and hydroxyapatite in the coatings. Corrosion properties were assessed via potentiodynamic polarization tests in simulated body fluid (SBF) solution. Tribological and mechanical properties were evaluated by pin-on-disk and microhardness, respectively. The in vitro apatite-formation ability of the coatings was assessed by immersion in SBF at 37 °C, with ion concentration changes measured by inductively coupled plasma spectrometry (ICP). Results indicated that increasing current density reduced porosities and increased the Ca/P ratio.

Polarized ATR-FTIR studies of DPPC/DPPG lipid bilayers doped with PLL

The structural characterization of lipid bilayers is crucial for understanding various biological processes and designing effective systems of drugs. Attenuated Total Reflection Fourier Transformed Infrared (ATR-FTIR) spectroscopy is a powerful technique for probing lipid membrane properties, but conventional methods face challenges in discerning molecular orientation and intermolecular interactions. The polarized ATR-FTIR spectroscopy combined with Principal Component Analysis (PCA) was used to investigate the interactions between positively charged peptide (poly-L-lysine (PLL)) and anionic lipid bilayers (dipalmitoylphosphatidylcholine/dipalmitoylphosphatidylglycerol, DPPC/DPPG). This integrated approach offers deeper insight into mutual interactions between proteins and lipids of membrane, providing a comprehensive understanding of structure of both protein and lipid bilayers components. The findings of this study shed light on the orientational order of lipid molecules in DPPC/DPPG membrane structure as well as secondary strictures of PPL peptides. It was shown that the presence of PLL peptide disrupts lipid molecule ordering within the lipid bilayer, primarily through electrostatic and H-bond interactions. The utility of polarized ATR-FTIR spectroscopy supported by PCA calculations in elucidating molecular organizations within complex membrane systems is emphasized.

Renal Cell Carcinoma Discrimination through Attenuated Total Reflection Fourier Transform Infrared Spectroscopy of Dried Human Urine and Machine Learning Techniques.

Renal cell carcinoma (RCC) is the sixth most common cancer in men and is often asymptomatic, leading to incidental detection in advanced disease stages that are associated with aggressive histology and poorer outcomes. Various cancer biomarkers are found in urine samples from patients with RCC. In this study, we propose to investigate the use of Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy (ATR-FTIR) on dried urine samples for distinguishing RCC. We analyzed dried urine samples from 49 patients with RCC, confirmed by histopathology, and 39 healthy donors using ATR-FTIR spectroscopy. The vibrational bands of the dried urine were identified by comparing them with spectra from dried artificial urine, individual urine components, and dried artificial urine spiked with urine components. Urea dominated all spectra, but smaller intensity peaks, corresponding to creatinine, phosphate, and uric acid, were also identified. Statistically significant differences between the FTIR spectra of the two groups were obtained only for creatinine, with lower intensities for RCC cases. The discrimination of RCC was performed through Principal Component Analysis combined with Linear Discriminant Analysis (PCA-LDA) and Support Vector Machine (SVM). Using PCA-LDA, we achieved a higher discrimination accuracy (82%) (using only six Principal Components to avoid overfitting), as compared to SVM (76%). Our results demonstrate the potential of urine ATR-FTIR combined with machine learning techniques for RCC discrimination. However, further studies, especially of other urological diseases, must validate this approach.