Rational design of the active sites of hydrolysis dissociation intermediates to weaken their active site competition and toxicity is a key challenge to achieve efficient and stable hydrogen evolution reaction (HER) in ruthenium-containing alloys. Density Functional Theory (DFT) simulations reveal that the transfer of the d-band electrons from Ru to Ni in RuNi alloys results in a Gibbs free energy of -0.12eV for the Ru0.250Ni Fcc-site H*. In addition, the high spin state of the electrons outside the Ru nucleus strengthens the adsorption of OH* on the Ru─Ni bond, which weakens the active-site competition and toxicity successfully. This theoretical prediction is confirmed by electrodeposition of prepared aRuxNi, and the RuNi alloys obtained by Ru atom doping have excellent HER properties. aRu0.250Ni has overpotentials of 38 and 162.4mV at -10 and -100mAcm-2, respectively, and can be stably operated at -100mAcm-2 Dual-electrode system aRu0.250Ni//bRu0Ni demonstrates an ultra-low battery voltage (1.86V @500mAcm-2) and excellent stability (24h@300mAcm-2). This holistic work resolves the mechanism of active site separation and strengthening in RuNi alloys, and provides a new design idea for the preparation of highly efficient alkaline HER electrodes.