Organophosphate esters (OPEs) discharged from rural domestic wastewater were one of the important sources of OPEs in receiving water bodies, which has posed a potential threat to the ecological environment. However, very little information on the characteristics of OPEs in the rural domestic wastewater is available. Herein, the occurrence, removal efficiency and environmental implication of OPEs in rural domestic wastewater treatment facilities (RD-WWTFs) along the Yangtze River Basin were investigated. Results indicated that the median concentrations of ΣAlkyl-OPEs, ΣHalogenated-OPEs, ΣAryl-OPEs and the total OPE (ΣOPEs) in influents were 28.28, 99.25, 10.22 and 136.84 ng/L, while the median concentrations of them in effluents were 25.80, 141.86, 7.98 and 173.31 ng/L, respectively. Undoubtedly, halogenated OPEs were the most abundant in both influent and effluent, followed by alkyl and aryl OPEs, and they accounted for average proportions of 69.50%, 19.96%and 10.54% for influents, and 78.16%, 16.14%and 5.71% for effluents, respectively. Specifically, tris(2-chloroisopropyl) phosphate (TCPP, median: 55.17 ng/L in influents and 85.75 ng/L in effluents) was the dominant contributor to the ΣOPEs concentrations with average proportions of 37.75% and 47.33% for influents and effluents, respectively. Moreover, the concentration ranks for most OPEs except for aryl OPEs from high to low were upper reaches > lower reaches > middle reaches. However, negative values of tris(2-chloroethyl)phosphate (TCEP, −32.4%), TCPP (−55.4%) and tris(1,3-dichloroisopropyl) phosphate (TDCPP, −26.3%) were observed. The removal rates of alkyl OPEs (10–20%) and aryl OPEs (20–30%) were also not sufficient. Ecological risk values of ΣOPEs showed that there were 2.44% of high risk, 31.7% of moderate risk and 41.5% of low risk for effluents; while 0.00%, 48.8% and 46.3% were exhibited in high, moderate and low risk for influents, indicating that very slight reduction in risk was achieved by the RD-WWTFs.
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