Subclinical atherosclerosis is measured by intima‐media thickening (IMT) in human carotid arteries and strongly predicts cardiovascular risks. Human studies showed that carotid IMT is determined by genetic factors. Recently we identified several quantitative trait loci (QTL) that influence intima formation in response to low blood flow in a mouse genetic cross (C3HeB/FeJxSJL/J, N2=134). We hypothesized that different genomic regions control artery compartments of the remodeled carotid. In particular, we investigated 4 carotid compartment traits: intima+media, media ratio of the left‐to‐right (L/R), external elastic lamina (EEL) ratio L/R, and adventitia ratio L/R. Using genome‐wide scan we identified three highly significant QTLs: Imm1 (intima+media modifier 1 locus) on chromosome 2 (chr2; LOD=6.8), Imm2 on Chr11 (LOD=5.1), and Eelm1 (EEL modifier 1 locus) on chr2 (LOD=5.6). There were five significant QTLs: Imm3 on Chr18 (LOD=3.0), Mrm1 (media ratio L/R modifier 1; LOD=3.9) and Arm1 (adventitia ratio L/R modifier 1; LOD=3.3) on chr2; Mrm2 (LOD=2.9) and Arm2 (LOD=3.9) on chr11. Interval mapping showed that significant intima loci co‐localized with carotid remodeling traits on chr2 and chr11. However, the most significant loci for intima+media, media and EEL traits were localized on chr2, while the most significant adventitia trait locus was on chr11. In summary, for the first time we mapped artery compartment QTLs that regulate carotid remodeling in response to changes in blood flow. These results are important for our understanding of the genetic mechanisms that contribute to carotid IMT and atherosclerosis in humans. This study was supported by NIH HL‐62826 (PI: B.C. Berk).
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