Aquatic Model Research Articles

Zebrafish Research Model: Homeopathy in Heavy Metal Intoxication

Environmental contamination by heavy metals is a significant global concern due to its adverse impacts on human, animal, and ecosystem health. Heavy metals such as lead (Pb), mercury (Hg), cadmium (Cd), and arsenic (As) are particularly worrying because of their persistence in the environment and toxic potential. These metals can be found in water bodies, affecting the quality of drinking water and aquatic ecosystems. Exposure to these metals through water can cause acute and chronic poisoning, damage to kidneys, liver, and nervous system, and increase the risk of cancer. Homeopathic medicines have great potential for treating intoxications and have been demonstrated clinically; however, other medicines still need to be tested. Zebrafish (Danio rerio) is used to study the toxicity of hazardous chemicals, including the assessment of impacts on reproductive, cardiovascular, and neural development, making it a relevant model to explore the efficacy and safety of homeopathic treatments. Studies on arsenate, mercury, and lead intoxication using the aquatic model have shown that homeopathic medicines (Arsenicum album, Mercurius solubilis, and Plumbum metallicum) reduced anxiety as well as physical and neurological effects caused by fish intoxication. The advantages of using Zebrafish as a research model include small size and low maintenance cost, rapid development, high fecundity, and external reproduction, as well as sequenced genome and genetic similarity to humans. This makes Danio rerio a model used worldwide.

Sustainable strategy and rapid naked eye performance of novel Cu@SG nanosensor for detection of glyphosate in aquatic models

A rapid and sensitive colorimetric nanosensor was developed using a natural exudate as a sustainable reducing and capping agent. Copper nanoparticles stabilized with Sumac gum (CuNPs@SG) were employed as a sensitive colorimetric probe for detecting glyphosate in aqueous environments. Various techniques, including UV-Vis, FESEM, XRD, TEM, XPS, and Z.p analysis, were used to study and confirm the nanoscale properties of the sensor. The characterization of CuNPs@SG revealed that the nanoparticles were spherical and had sizes ranging from 50 to 53 nm. Additionally, the nanoparticles exhibited excellent LSPR at 599 nm, which was exploited for glyphosate detection. After optimizing experimental conditions, the proposed method successfully quantified glyphosate concentrations in aqueous samples, with a calibration curve ranging from 5 to 140 mg/L and an R² value of approximately 0.95. The method also demonstrated a low limit of detection (LOD) of 4.2 mg/L. The CuNPs@SG sensor was effectively applied for detecting glyphosate in aqueous samples, achieving satisfactory recovery rates. Furthermore, the nanosensor was tested on surfaces of plant parts sprayed with glyphosate solution, where it also showed excellent performance against the target pollutant. This approach provides a simple and practical solution for monitoring contaminants such as glyphosate in aquatic models and agricultural products.

Ecological fitness impairments induced by chronic exposure to polyvinyl chloride nanospheres in Daphniamagna

The aim of this study was to evaluate the effects of chronic exposure (21 days) to an environmentally relevant concentration (10 μg/L) of two different nanoplastic (NP) polymers on the aquatic model organism Daphnia magna. This study examined the impact of exposure to 200 nm polystyrene nanoplastics (PS-NPs) and polyvinyl chloride nanoplastics (PVC-NPs), which had an average size similar to that of PS-NPs (ranging from 50 nm to 350 nm). The effects of polymer exposure on morphometric parameters, number of molts, swimming behaviour, and reproductive outcomes were evaluated. The findings indicate that PVC exposure induced higher body dimensions, while both polymers resulted in an increase in molting behaviour. Moreover, exposure to PVC-NPs had a negative impact on the reproduction of D. magna, as evidenced by a delay in the day of the first brood, a reduction in the total number of offspring produced, and, consequently, a slower population growth rate. It is hypothesised that the ingestion of PVC-NPs by D. magna may have resulted in an impairment of ecdysone hormone functionality and that the increased moulting events potentially representing an adaptive response to the negative effects of PVC-NP adhesion to the organism's body surfaces. These two organisms' responses could concur to explain the observed effects. This study identified the fitness impairments caused by exposure to PVC-NPs, which can lead to relevant ecological consequences. The comparative analysis of the effects induced by two types of polymers has revealed the generation of disparate hazards to D. magna. Furthermore, the chemical composition appears to be a pivotal factor in the onset of these effects. It can therefore be stated that PS is not a suitable standard for representing the toxicity of all plastics.

Monosodium glutamate disrupts zebrafish sleep-like state likely through activation of peripheral nervous system glutamate receptors

Monosodium glutamate (MSG), a widely used flavor enhancer, has raised concerns about its effects on behavior and sleep. This study investigates how MSG influences zebrafish sleep-like state (SLS) and interacts with other substances affecting neurobehavioral responses. Adult zebrafish were exposed to MSG at concentrations of 50, 100, and 150 mg/L, and their swimming speeds and SLS durations were recorded over a 14-hour night period. The results indicated that higher MSG concentrations increased swimming speeds and decreased SLS duration, suggesting heightened excitability and reduced sleep recovery. The study further evaluated how MSG impacts anesthesia sensitivity induced by 2-phenoxyethanol (POE) compared to alcohol and nicotine. Zebrafish were pre-treated with 50 mg/L MSG, 0.5% alcohol, or 0.5 mg/L nicotine before being anesthetized with POE. Nicotine decreased anesthesia sensitivity in a concentration-dependent manner by enhancing neurotransmitter release. In contrast, MSG and alcohol had minimal effects on anesthesia. The limited impact of MSG on anesthesia sensitivity suggests that MSG primarily affects peripheral nervous system functions rather than central nervous system functions, likely due to its poor ability to cross the blood-brain barrier. Overall, the findings demonstrate that MSG disrupts zebrafish behavior through peripheral mechanisms, affecting both swimming activity and sleep patterns. Nicotine, on the other hand, influences behavior through central nervous system interactions. These results highlight the need for further research to better understand how dietary additives like MSG impact neurobehavioral functions in aquatic models, offering insights into their broader implications for sleep and behavior.

High-quality chromosome-level genome assembly of female Artemia franciscana reveals sex chromosome and Hox gene organization

Artemia is a crustacean genus belonging to the order Anostraca in the class Branchiopoda and lives in inland hypersaline lakes. Among the genus, A. franciscana is a valuable species as a fish food in the aquaculture industry or as an aquatic model organism for toxicity tests. However, genomic data for A. franciscana remains incomplete. In this study, high-quality genome assembly at the chromosome level of female A. franciscana was conducted by combining various sequencing and assembly technologies. The final A. franciscana assembled genome was 1.27 Gb in length, containing 21 chromosomal scaffolds (>10 Mb). The scaffold N50 was 45.3 Mb, with a complete BUSCO value of 91.0 %, thereby confirming that a high-quality genome was assembled. Gene annotation shows that the A. franciscana genome contained 67.26 % of repetitive sequences, and a total of 26,923 protein-coding genes were predicted. Among the 21 chromosome-scale scaffolds, chromosome 1 was identified as a sex chromosome Z. Additionally, five contigs of putative W chromosome fragments and the candidate sex-determining genes were suggested. Ten homeobox (Hox) genes were identified in A. franciscana on the chromosome 14, which were in two subclusters with a large gap. Hox gene organizations within 13 arthropods showed that four anostracans had conserved synteny. This study provides a new female Artemia genome with sex chromosome and the first complete genomic arrangement of the Hox cluster in Anostraca. This study will be a useful genomic and genetic reference for understanding the evolution and development of A. franciscana.

Possible mechanisms for adverse effects on zebrafish sperm and testes associated with low-level chronic PFOA exposure

Perfluorooctanoic acid (PFOA), which is widely used during the manufacturing of fluoropolymer coatings and polytetrafluoroethylene, is now a widespread pollutant in the environment and within the human body. This study used zebrafish, an aquatic model species, to investigate how low levels of chronic PFOA exposure affect the reproductive system. The results of the experiments in which zebrafish were exposed to 414 ng/L or 4140 ng/L for 60 days showed a variety of adverse effects on testicular tissue and sperm, including dose-dependent changes in plasma estradiol and testosterone levels, various sperm malformations, decreased sperm motility and concentration, and PFOA-induced oxidative stress and testicular damage with increased rates of apoptosis. In addition, offspring of the zebrafish that had been exposed to PFOA were characterized by increased malformation and mortality. Subsequent transcriptional analyses of the male gonads revealed the significant activation of oxidative stress bioprocesses and immuno-inflammatory signaling pathways, along with the dysregulation of reproductive bioprocesses. In conclusion, low-level chronic exposure to PFOA affects both the reproductive performance of adults and the development of offspring; the mechanisms for these adverse effects involve alterations in several molecular pathways that may be involved in PFOA-induced oxidative stress and reproductive abnormalities. The presented data can be used to assess the ecotoxicity of PFOA to the male reproductive system at environmentally-relevant concentrations.

Facilitating microplastic ingestion in aquatic models: A verified protocol for daphnia magna as a trojan horse vector

Microplastic pollution poses a significant environmental threat due to its persistence, widespread distribution, and inherent toxic potential. Despite the increasing number of publications in this field, a standardized protocol for the laboratory intake of microplastics by Daphnia magna has yet to be established. In this study, we introduce a verified protocol designed to facilitate the ingestion of microplastic particles (MPs) by D. magna, ranging in size from 5–55 µm. This protocol can be further applied to evaluate the toxicity of MPs on D. magna, a crucial organism model in ecotoxicology. Furthermore, this protocol can be used to assess toxicity of MPs in other aquatic species, such as fish, by using daphnids as a vehicle for ensuring the ingestion of these particles. Consequently, this protocol can be applied to study also one of the most pressing concerns regarding exposure to MPs, the transfer of MPs through different trophic levels, which has a great potential for ecotoxicological studies.•The influence of MPs concentration, duration and exposure dynamics and D. magna age/size in MPs intake were tested.•We have determined the optimal conditions for promoting microplastic ingestion by D. magna.

The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence.

Vibrio coralliilyticus is a pathogen of coral and shellfish, leading to devastating economic and ecological consequences worldwide. Although rising ocean temperatures correlate with increased V. coralliilyticus pathogenicity, the specific molecular mechanisms and determinants contributing to virulence remain poorly understood. Here, we systematically analyzed the type VI secretion system (T6SS), a contact-dependent toxin delivery apparatus, in V. coralliilyticus. We identified 2 omnipresent T6SSs that are activated at temperatures in which V. coralliilyticus becomes virulent; T6SS1 is an antibacterial system mediating interbacterial competition, whereas T6SS2 mediates anti-eukaryotic toxicity and contributes to mortality during infection of an aquatic model organism, Artemia salina. Using comparative proteomics, we identified the T6SS1 and T6SS2 toxin arsenals of 3 V. coralliilyticus strains with distinct disease etiologies. Remarkably, T6SS2 secretes at least 9 novel anti-eukaryotic toxins comprising core and accessory repertoires. We propose that T6SSs differently contribute to V. coralliilyticus's virulence: T6SS2 plays a direct role by targeting the host, while T6SS1 plays an indirect role by eliminating competitors.

Zebrafish аs а Promising Experimental Model of Traumatic Brain Injury

Traumatic brain injury (TBI) involves various types of physical injuries to brain tissue. TBI is a highly heterogeneous clinical condition, whose symptoms include cognitive, motor and emotional deficits, as well as neurodegeneration and neuroinflammation. Animal modeling plays a key role in studying TBI, expanding our knowledge of TBI and its temporal dynamics, and to develop new drugs for its treatment. Recently, the use of the bony zebrafish (Danio rerio) as an aquatic model organism has attracted particular interest in translational neurobiology. Zebrafish are presently second (after mice) laboratory animal species most used in biomedicine. Here, we discuss the prospects of using zebrafish to model TBI, as well as problems and new directions of research in this area. We also emphasize the importance of zebrafish as a highly translational model for studying the molecular mechanisms and neurological disorders in TBI, as well as screening for potential therapeutic agents.

Exploring Serotonin in Catch Contractions and Specific Dynamic Action in Postprandial Metabolism: Insights from Aquatic Models

Animal model organisms have long been instrumental in unraveling complex biological processes relevant to human physiology. The first study investigates how exercise and food intake affect metabolism, using zebrafish as our model. The second experiment dives into how neurotransmitters like dopamine and serotonin control muscle movements, particularly catch contractions, in mussels. Examining these processes provides insights into how muscle function and metabolism are regulated, potentially shedding light on human health and conservation efforts.

Ecotoxicological assessment of cyclic peptides produced by a Planktothrix rubescens bloom: Impact on aquatic model organisms

Cyanobacterial blooms, a natural phenomenon in freshwater ecosystems, have increased in frequency and severity due to climate change and eutrophication. Some cyanobacteria are able to produce harmful substances called cyanotoxins. These metabolites possess different chemical structures and action mechanisms representing a serious concern for human health and the environment. The most studied cyanotoxins belong to the group of microcystins which are potent hepatotoxins. Anabaenopeptins are another class of cyclic peptides produced by certain species of cyanobacteria, including Planktothrix spp. Despite limited knowledge regarding individual effects of anabaenopeptins on freshwater organisms, reports have identified in vivo toxicity in representatives of freshwater zooplankton by cyanobacterial extracts or mixtures containing anabaenopeptins. This study focused on the isolation and toxicity evaluation of the cyanotoxins produced in the 2022 Planktothrix rubescens bloom in Averno lake, Italy. The three main cyclic peptides have been isolated and identified by nuclear magnetic resonance (NMR) spectroscopy, mass spectrometry (MS) and optical analyses as anabaenopeptins A and B, and oscillamide Y. Ecotoxicological tests on the aquatic model organisms Daphnia magna (crustacean), Raphidocelis subcapitata (algae), and Aliivibrio fischeri (bacterium) revealed that anabaenopeptins A and B do not generate significant toxicity at environmentally relevant concentrations, being also found a stimulatory effect on R. subcapitata in the case of anabaenopeptin A. By contrast, oscillamide Y displayed toxicity. Ecological implications based on ECOSAR predictions align with experimental data. Moreover, long-term exposure bioassays on different green unicellular algae species showed that R. subcapitata was not significantly affected, while Scenedesmus obliquus and Chlorella vulgaris exhibited altered growth patterns. These results, together with the already-known background in literature, highlight the complexity of interactions between organisms and the tested compounds, which may be influenced by species-specific sensitivities, physiological differences, and modes of action, possibly affected by parameters like lipophilicity.

Lambda-Cyhalothrin induced behavioural, neurotoxic and oxidative stress on vertebrate model Danio rerio (Hamilton-Buchanan 1822).

λ-cyhalothrin, a synthetic type II pyrethroid, has become increasingly popular for control of aphids, butterfly larvae, and beetles, replacing other agricultural chemicals. As a result of which, residues of this synthetic pesticide are being reported across the globe in natural water, which poses a serious threat to aquatic life. Therefore, the present study was designed to understand the toxicity effects of λ-cyhalothrin on behaviour, oxidative stress and neurotoxicity in a vertebrate aquatic model, zebrafish (Danio rerio). The fish were exposed to 0.129, 0.194 and 0.388 µg/L corresponding to 5%, 10% and 20% of 96hLC50 (1.94 µg/L) for 28 days. Upon exposure to the highest concentration (0.388 µg/L), the test animal exhibited significant alterations in behavioural patterns like number of entries to the top zone (n), decrease in average speed (m/s) and decrease in time spent in top zone (s). Moreover, the shoaling test demonstrated a significant decrease (p < 0.05) in the relative time spent by the tested fish (%) near the stimulus fish. The change in behavioural alterations might be linked to a significant decrease (p < 0.05) in the brain acetylcholine esterase activity. Furthermore, the present study also illustrates oxidative stress exerted by λ-cyhalothrin through an increase in the production of reactive oxygen species, which is again clearly depicted by a significant increase (p < 0.05) in Superoxide dismutase, Catalase and Glutathione peroxidase activities. Overall, the present study systematically demonstrates the chronic effects of λ-cyhalothrin on adult fish behaviour and physiology, which will contribute to assessing the risks of λ-cyhalothrin to organismal health.

Ecological Risk Assessment of Three Pesticide Additives in Soil and Application to the Remediation of Contaminated Soil.

Pesticide additives (PAs) are auxiliary ingredients added to the pesticide manufacturing and use processes, constituting 1% to 99% of the pesticide and often composed of benzene and chlorinated hydrocarbons. We selected three typical PAs, toluene, chloroform, and trichloroethylene, to evaluate their retention function toxicity and ecological risk in soil. Soil immobilization techniques and aquatic model organisms were used to demonstrate the effectiveness of the immobilized soil method to determine the ecological risk of chemicals. The 48-h median lethal concentrations of toluene, chloroform, and trichloroethylene alone in spiked soil on Daphnia magna were 10.5, 2.3, and 1.1 mg/L (medium, high, and high toxicity, respectively). The toxicity of the three-PA mixtures showed an antagonistic effect. The risk levels of toluene, chloroform, and trichloroethylene in the soil were evaluated as moderate to high, low to high, and high risk, respectively. The toxicity of two pesticide-contaminated sites in the Yangtze River Delta before and after remediation was successfully evaluated by immobilized soil technology. The toxicity of two soil sampling points was reduced from medium toxic to low toxic and no toxic, respectively, after remediation. The results of our study give a rationale for and prove the validity of the aquatic model organisms and soil immobilization techniques in assessing the soil retention functions toxicity of PAs. Environ Toxicol Chem 2024;43:1677-1689. © 2024 SETAC.

Evaluation of the Aquatic Toxicity of Several Triazole Fungicides.

Fungicides play an important role in crop protection, but they have also been shown to adversely affect non-target organisms, including those living in the aquatic environment. The aim of the present study is to combine experimental and computational approaches to evaluate the effects of flutriafol, metconazole, myclobutanil, tebuconazole, tetraconazole and triticonazole on aquatic model organisms and to obtain information on the effects of these fungicides on Lemna minor, a freshwater plant, at the molecular level. The EC50 (the half-maximum effective concentration) values for the growth inhibition of Lemna minor in the presence of the investigated fungicides show that metconazole (EC50 = 0.132 mg/L) and tetraconazole (EC50 = 0.539 mg/L) are highly toxic, tebuconazole (EC50 = 1.552 mg/L), flutriafol (EC50 = 3.428 mg/L) and myclobutanil (EC50 = 9.134 mg/L) are moderately toxic, and triticonazole (EC50 = 11.631 mg/L) is slightly toxic to this plant. The results obtained with the computational tools TEST, ADMETLab2.0 and admetSAR2.0 also show that metconazole and tetraconazole are toxic to other aquatic organisms: Pimephales promelas, Daphnia magna and Tetrahymena pyriformis. A molecular docking study shows that triazole fungicides can affect photosynthesis in Lemna minor because they strongly bind to C43 (binding energies between -7.44 kcal/mol and -7.99 kcal/mol) and C47 proteins (binding energies between -7.44 kcal/mol and -8.28 kcal/mol) in the reaction center of photosystem II, inhibiting the binding of chlorophyll a to these enzymes. In addition, they can also inhibit glutathione S-transferase, an enzyme involved in the cellular detoxification of Lemna minor.

Binary effects of fluoxetine and zinc on the biomarker responses of the non-target model organism Daphnia magna

The antidepressant effect of zinc on mammals has been documented in recent decades, and the concentration of the antidepressant fluoxetine (FLX) in aquatic environments has been rising constantly. The aim of the present study is to evaluate the combined toxicity of a serotonin reuptake inhibitor (FLX) and Zn2+ on a non-target aquatic model organism Daphnia magna. Animals were exposed to single and binary combinations of FLX (20.5 and 41 µg/L for subchronic and 41 and 82 µg/L for acute exposures) and Zn2+ (40 µg/L for subchronic and 80 µg/L for acute exposures). In vivo experiments were done for 7 days subchronic and 48 h acute exposure, while subcellular supernatants of whole Daphnia lysate (WDL) were directly treated with the same concentrations used in the acute experiments. Morphological characteristics, Ca2+-ATPase, antioxidant enzyme activities, and lipid peroxidation were examined. There was antioxidant system suppression and Ca2+-ATPase inhibition despite the diverse response patterns due to duration, concentration, and toxicant type. After acute exposure, biomarkers showed a diminishing trend compared to subchronic exposure. According to integrated biomarker response index (IBR) analysis, in vivo Zn2+ exposure was reasonably effective on the health of D. magna, whereas exposure of WDL to Zn2+ had a lesser impact. FLX toxicity increased in a concentration-dependent manner, reversed by the combined exposure. We concluded that potential pro-oxidative and adverse Ca2+-ATPase effects of FLX and Zn2+ in D. magna may also have harmful impact on ecosystem levels. Pharmaceutical exposure (FLX) should be considered along with their potential to interact with other toxicants in aquatic biota.Graphical

Online 3D behavioral tracking of aquatic model organism with a dual-camera system

Behavioral tracking system of aquatic model organism is crucial for applications in aquaculture, environment and biomedicine, as it facilitates human to monitor subject states by automatically recognizing individual identities, and quantify their movement trajectories. Previous research has been devoted to this topic, but they are still not simple and effective enough. Therefore, this work introduces a novel online monitoring system implemented by dual-camera equipment and software modules consisting of an object detector and a multi-view multi-target tracker. The tracker provides the abilities of cross-view matching, underwater 3D reconstruction, and 3D target tracking. Specifically, our solution adopts a new paradigm, called tracking by early-reconstruction, which prioritizes the 3D reconstruction of targets’ coordinates on a frame-by-frame basis and then tracks them directly in 3D space rather than in a 2D image plane. This paradigm simplifies the complex multi-view tracking problem into a series of local association procedures, allowing us to achieve an online resolution through the iterative approach. To verify the effectiveness of the system, we employ zebrafish as the research subject, and evaluate the accuracy and robustness of the system on tracking benchmark, behavioral tasks and simulated data. Finally, we conducted extensive experiments and demonstrated the efficiency and effectiveness of the proposed system.

Cardiac and neurobehavioral impairments in three phylogenetically distant aquatic model organisms exposed to environmentally relevant concentrations of boscalid

Boscalid (2-Chloro-N-(4′-chlorobiphenyl-2-yl) nicotinamide), a pyridine carboxamide fungicide, is an inhibitor of the complex II of the respiration chain in fungal mitochondria. As boscalid is only moderately toxic for aquatic organisms (LC50 > 1–10 mg/L), current environmental levels of this compound in aquatic ecosystems, in the range of ng/L-μg/L, are considered safe for aquatic organisms. In this study, we have exposed zebrafish (Danio rerio), Japanese medaka (Oryzias latipes) and Daphnia magna to a range of concentrations of boscalid (1–1000 μg/L) for 24 h, and the effects on heart rate (HR), basal locomotor activity (BLA), visual motor response (VMR), startle response (SR), and habituation (HB) to a series of vibrational or light stimuli have been evaluated. Moreover, changes in the profile of the main neurotransmitters have been determined. Boscalid altered HR in a concentration-dependent manner, leading to a positive or negative chronotropic effect in fish and D. magna, respectively. While boscalid decreased BLA and increased VMR in Daphnia, these behaviors were not altered in fish. For SR and HB, the response was more species- and concentration-specific, with Daphnia exhibiting the highest sensitivity. At the neurotransmission level, boscalid exposure decreased the levels of L-aspartic acid in fish larvae and increased the levels of dopaminergic metabolites in D. magna. Our study demonstrates that exposure to environmental levels of boscalid alters cardiac activity, impairs ecologically relevant behaviors, and leads to changes in different neurotransmitter systems in phylogenetically distinct vertebrate and invertebrate models. Thus, the results presented emphasize the need to review the current regulation of this fungicide.

Screening androgen receptor agonists of fish species using machine learning and molecular model in NORMAN water-relevant list

Androgen receptor (AR) agonists have strong endocrine disrupting effects in fish. Most studies mainly investigate AR binding capacity using human AR in vitro. However, there is still few methods to rapidly predict AR agonists in aquatic organisms. This study aimed to screen AR agonists of fish species using machine learning and molecular models in water-relevant list from NORMAN, a network of reference laboratories for monitoring contaminants of emerging concern in the environment. In this study, machine learning approaches (e.g., Deep Forest (DF)), Random Forests and artificial neural networks) were applied to predict AR agonists. Zebrafish, fathead minnow, mosquitofish, medaka fish and grass carp are all important aquatic model organisms widely used to evaluate the toxicity of new pollutants, and the molecular models of ARs from these five fish species were constructed to further screen AR agonists using AlphaFold2. The DF method showed the best performances with 0.99 accuracy, 0.97 sensitivity and 1 precision. The Asn705, Gln711, Arg752, and Thr877 residues in human AR and the corresponding sites in ARs from the five fish species were responsible for agonist binding. Overall, 245 substances were predicted as suspect AR agonists in the five fish species, including, certain glucocorticoids, cholesterol metabolites, and cardiovascular drugs in the NORMAN list. Using machine learning and molecular modeling hybrid methods rapidly and accurately screened AR agonists in fish species, and helping evaluate their ecological risk in fish populations.

Extensive post-transcriptional regulation revealed by integrative transcriptome and proteome analyses in salicylic acid-induced flowering in duckweed (Lemna gibba).

Duckweed is an aquatic model plant with tremendous potential in industrial and agricultural applications. Duckweed rarely flowers which significantly hinders the resource collection and heterosis utilization. Salicylic acid (SA) can significantly induce duckweed to flower; however, the underlying regulatory mechanisms remain largely unknown. In this work, transcriptome and proteome were conducted in parallel to examine the expression change of genes and proteins in Lemna gibba under SA treatment. A high-quality reference transcriptome was generated using Iso-Seq strategy, yielding 42,281 full-length transcripts. A total of 422, 423, and 417 differentially expressed genes (DEGs), as well as 213, 51, and 92 differentially expressed proteins (DEPs), were identified at flower induction, flower initiation, and flowering stages by ssRNA-seq and iTRAQ methods. Most DEGs and DEPs were only regulated at either the transcriptomic or proteomic level. Additionally, DEPs exhibited low expression correlations with the corresponding mRNAs, suggesting that post-transcriptional regulation plays a pivotal role in SA-induced flowering in L. gibba. Specifically, the genes related to photosynthesis, stress, and hormone metabolism were mainly regulated at the mRNA level, those associated with mitochondrial electron transport / ATP synthesis, nucleotide synthesis, and secondary metabolism were regulated at the protein level, while those related to redox metabolism were regulated at the mRNA and/or protein levels. The post-transcriptional regulation of genes relevant to hormone synthesis, transcription factors, and flowering was also extensively analyzed and discussed. This is the first study of integrative transcriptomic and proteomic analyses in duckweed, providing novel insights of post-transcriptional regulation in SA-induced flowering of L. gibba.

Methods: A bioinformatic protocol for rapid analysis of zebrafish embryo photo-motory responses (PMR) in neurotoxicity testing

Chemobehavioural phenotyping presents unique opportunities for analyzing neurotoxicants and discovering behavior-modifying neuroceuticals in small aquatic model organisms such as zebrafish (Danio rerio). A recently popularized approach in this field involves the utilization of zebrafish embryos for a photo-motor response (PMR) bioassay. The PMR bioassay entails stimulating zebrafish embryos between 24 and 36 h post fertilization (hpf) with a high-intensity light stimulus, inducing a transient increase in the frequency of photo-induced embryo body flexions. These flexions can be computationally analyzed to derive behavioral signatures, enabling the categorization of neuromodulating chemicals.Despite the significant advantages of the PMR bioassay, its widespread implementation is hindered by lack of well described and straightforward high-throughput bioinformatic analysis of behavioral data. In this methods article, we present an easily implementable bioinformatics protocol specifically designed for rapid behavioral analysis of large cohorts of zebrafish specimens in PMR bioassays. We also address common pitfalls encountered during PMR analysis, discuss its limitations, and propose future directions for developing next-generation biometric analysis techniques in chemobehavioural assays utilizing zebrafish embryos.