Anionic Fragments Research Articles

Dynamics of hydride anion and acetyloxyl radical production by electron attachment to acetic acid.

We investigate the dynamics and site-selectivity in the dissociation of transient anions formed upon attachment of low energy electrons to acetic acid by anion fragment momentum imaging experiments. The resonances at 6.7 and 7.7eV are confirmed to dissociate exclusively by the O-H bond, while a third resonance at 9.1eV dissociates primarily by both C-H break and O-H break. A fourth resonance near 10eV is found to dissociate by O-H break. For each resonance, the measured kinetic energy release indicates two-body dissociation produces a neutral radical in the ground electronic state, for all four resonances. The measured angular distributions are consistent with all four resonances having A' symmetry.

SF6 Negative Ion Formation in Charge Transfer Experiments.

In the present work, we report an update and extension of the previous ion-pair formation study of Hubers, M.M.; Los, J. Chem. Phys.1975, 10, 235-259, noting new fragment anions from time-of-flight mass spectrometry. The branching ratios obtained from the negative ions formed in K + SF6 collisions, in a wide energy range from 10.7 up to 213.1 eV in the centre-of-mass frame, show that the main anion is assigned to SF5- and contributing to more than 70% of the total ion yield, followed by the non-dissociated parent anion SF6- and F-. Other less intense anions amounting to <20% are assigned to SF3- and F2-, while a trace contribution at 32u is tentatively assigned to S- formation, although the rather complex intramolecular energy redistribution within the temporary negative ion is formed during the collision. An energy loss spectrum of potassium cation post-collision is recorded showing features that have been assigned with the help of theoretical calculations. Quantum chemical calculations for the lowest-lying unoccupied molecular orbitals in the presence of a potassium atom are performed to support the experimental findings. Apart from the role of the different resonances participating in the formation of different anions, the role of higher-lying electronic-excited states of Rydberg character are noted.

Mechanistic insight into the kinetic fragmentation of norpinonic acid in the gas phase: an experimental and density functional theory (DFT) study

Abstract. Norpinonic acid has been known as an important α-pinene atmospheric secondary organic aerosol (SOA) component. It is formed in the reaction of α-pinene, β-pinene or verbenone with atmospheric oxidizing reagents. In the presented study, tandem mass spectrometry techniques were used to determine the exact norpinonic acid fragmentation pathway in the gas phase. The precursor anion – deprotonated norpinonic acid (m/z 169), generated in an electrospray (ESI) source – was introduced into the collision cell of the mass spectrometer and fragmented using the energy-resolved collision-induced dissociation (ER-CID) technique. The experimental energy values of degradation processes were determined via analysis of the breakdown curves. Quantum chemical calculations of the reaction models were also constructed, including calculation of all transition states. Comparison between the experimental and the theoretical threshold energies calculated at a ωB97XD/6-311+G(2d,p) theoretical level has shown a good correlation. Two basic pathways of the fragmentation of the parent anion [M-H]− (m/z 169) were observed. Firstly this leads to the decarboxylation product (m/z 125) and secondly to the loss of a neutral molecule (C4H6O), together with the formation of the anion m/z 99. On the other hand, the breakdown of the anion m/z 125 gives rise to the m/z 69, 57 and 55 ions. To confirm structures formed during ER-CID experiments, the gas-phase proton transfer reactions were examined of all norpinonic acid anionic fragments with a series of neutral reagents, characterized by proton affinity (PA) values. Based on PA difference analysis, the most possible chemical structures were proposed for the observed fragment anions.

Effect of terpene alcohol fragment and type of anion in the pyrrolidinium salts on the physicochemical properties and antibacterial activity

Pyrrolidinium salts containing in the cation chiral substituent derived from three terpene alcohols: (–)-menthol, (–)-borneol, and (+)-fenchol and consisting of six different anions: chloride [Cl]−, tetrafluoroborate [BF4]−, hexafluorophosphate [PF6]−, trifluoromethanesulfonate [OTf]−, bis(trifluoromethylsulfonyl)imide [NTf2]−, bis(pentafluoroethylsulfonyl)imide [NPf2]−, and perfluorobutanesulfonate [C4F9SO3]− were compared in terms of physicochemical properties and antimicrobial activity. The thermal properties including phase transition temperatures, thermal stability, specific rotation have been taken into consideration. Liquid pyrrolidinium salts with [NTf2]− and [NPf2]− anions, which can be classified as chiral ionic liquids, have also been compared in terms of density, dynamic viscosity, surface tension and contact angle on the surfaces of different polarity. The selected pyrrolidinium salts were evaluated for activity against nine bacterial strains using the agar well diffusion method. The zones of inhibition of bacterial growth were determined for pyrrolidinium salts used at different concentrations and depending on the structure of the cation and anion and compared with benzalkonium chloride as a positive control.

Unlocking the role of electrolyte concentration for Na-O2 batteries

Na-O2 batteries have attracted great interest in recent years mainly due to their high energy density, in theory having prospects to outperform the commercialized lithium-ion batteries. In the quest for optimization, a recently explored approach is to use highly concentrated electrolytes (HCEs). The knowledge of molecular level of solvation as function of electrolyte concentration and its impact on Na-O2 battery performance is, however, still very limited. In this work, experimental and computational methods are used to characterize the cation solvation and when the emergence of anions into the cation first solvation shell occurs, which affects the de-solvation process and formation of discharge products. Furthermore, the solid electrolyte interphase (SEI) formed using HCEs demonstrates presence of anion fragments, with poorer protection of the Na metal anode. Moreover, the use of HCEs is also linked to lowered capacity, possibly due to a decrease in the size of the cubic-shaped discharge products as the electrolyte concentration increases, causing clogging of the pores of the air cathode. Thus, increasing the electrolyte salt concentration seems to have a detrimental effect on the cyclability of Na-O2 batteries. Instead, electrolytes with a lower than conventional salt concentration show the best performance, which highlights the importance of carefully tuning the cation solvation alongside overall physico-chemical properties to enhance battery performance.

Many-body theory calculations of positronic-bonded molecular dianions.

The energetic stability of positron-dianion systems [A-;e+; A-] is studied via many-body theory, where A- includes H-, F-, Cl-, and the molecular anions (CN)- and (NCO)-. Specifically, the energy of the system as a function of ionic separation is determined by solving the Dyson equation for the positron in the field of the two anions using a positron-anion self-energy as constructed in Hofierka et al. [Nature 606, 688 (2022)] that accounts for correlations, including polarization, screening, and virtual-positronium formation. Calculations are performed for a positron interacting with H22-, F22-, and Cl22- and are found to be in good agreement with previous theory. In particular, we confirm the presence of two minima in the potential energy of the [H-;e+; H-] system with respect to ionic separation: a positronically bonded [H-;e+; H-] local minimum at ionic separations r ∼ 3.4 Å and a global minimum at smaller ionic separations r ≲ 1.6 Å that gives overall instability of the system with respect to dissociation into a H2 molecule and a positronium negative ion, Ps-. The first predictions are made for positronic bonding in dianions consisting of molecular anionic fragments, specifically for (CN)22- and (NCO)22-. In all cases, we find that the molecules formed by the creation of a positronic bond are stable relative to dissociation into A- and e+A- (positron bound to a single anion), with bond energies on the order of 1eV and bond lengths on the order of several ångstroms.

A Simple Manganese(I) Catalyst for the Efficient and Selective Hydrophosphination of Olefins with PH3, Primary, and Secondary Phosphanes.

A tridentate ligand L with a P,NH,N donor motif was synthesized in few steps from commercially available precursors. Upon reaction with [MnBr(CO)5], an octahedral 18-electron complex [Mn(CO)3(L)]Br (1) is obtained in which L adopts a facial arrangement. After deprotonation of the NH group in the cationic complex unit, a neutral Mn(I) amido complex [Mn(CO)2(L-H)] (2) is formed under loss of CO. Rearrangement of L-H leads to a trigonal bipyramidal structure in which the P and N donor centers are in trans position. Further deprotonation of 2 results in a dep-blue anionic complex fragment [Mn(CO)2(L-2H)]- (3). DFT calculations and a QTAIM analysis show that the amido complex 2 contains a Mn-N bond with partial double bond character and 3 an aromatic MnN2C2 ring. The anion [Mn(CO)2(L-2H)]- reacts with Ph2PH to give a phosphido complex, which serves as phosphide transfer reagent to activated olefins. But the catalytic activity is low. However, the neutral amido complex 2 is an excellent catalyst and with loadings as low as 0.04 mol %, turn over frequencies of >40'000 h-1 can be achieved. Furthermore, secondary and primary alkyl phosphines as well as PH3 can be added in a catalytic hydrophosphination reaction to a wide range of activated olefins such as α,β-unsaturated aldehydes, ketones, esters, and nitriles. But also, vinyl pyridine and some styrene derivatives are converted into the corresponding phosphanes.

Auricularia auricula Anionic Polysaccharide Nanoparticles for Gastrointestinal Delivery of Pinus koraiensis Polyphenol Used in Bone Protection under Weightlessness.

Auricularia auricula polysaccharides used in Pinus koraiensis polyphenol encapsulation and delivery under weightlessness are rarely reported. In this study, an anionic polysaccharide fragment named AAP Iα with a molecular weight of 133.304 kDa was isolated and purified to construct a polyphenol encapsulation system. Nanoparticles named NPs-PP loaded with a rough surface for Pinus koraiensis polyphenol (PP) delivery were fabricated by AAP Iα and ε-poly-L-lysine (ε-PL). SEM and the DLS tracking method were used to observe continuous changes in AAP Iα, ε-PL and PP on the nanoparticles' rough surface assembly, as well as the dispersion and stability. Hydrophilic, monodisperse and highly negative charged nanoparticles can be formed at AAP Iα 0.8 mg/mL, ε-PL 20 μg/mL and PP 80 μg/mL. FT-IR was used to determine their electrostatic interactions. Release kinetic studies showed that nanoparticles had an ideal gastrointestinal delivery effect. NPs-PP loaded were assembled through electrostatic interactions between polyelectrolytes after hydrogen bonding formation in PP-AAP Iα and PP-ε-PL, respectively. Colon adhesion properties and PP delivery in vivo of nanoparticles showed that NPs-PP loaded had high adhesion efficiency to the colonic mucosa under simulated microgravity and could enhance PP bioavailability. These results suggest that AAP Iα can be used in PP encapsulation and delivery under microgravity in astronaut food additives.

Photoelectron spectroscopy of the deprotonated tryptophan anion: the contribution of deprotomers to its photodetachment channels.

Photoelectron spectroscopy and electronic structure calculations are used to investigate the electronic structure of the deprotonated anionic form of the aromatic amino acid tryptophan, and its chromophore, indole. The photoelectron spectra of tryptophan, recorded at different wavelengths across the UV, consist of two direct detachment channels and thermionic emission, whereas the hν = 4.66 eV spectrum of indole consists of two direct detachment features. Electronic structure calculations indicate that two deprotomers of tryptophan are present in the ion beam; deprotonation of the carboxylic acid group (Trp(I)-) or the N atom on the indole ring (Trp(II)-). Strong similarities are observed between the direct detachment channels in the photoelectron spectra of tryptophan and indole, which in conjunction with electronic structure calculations, indicate that electron loss from Trp(II)- dominates this portion of the spectra. However, there is some evidence that direct detachment of Trp(I)- is also observed. Thermionic emission is determined to predominantly arise from the decarboxylation of Trp(I)-, mediated by the ππ* excited state near λ = 300 nm, which results in an anionic fragment with a negative electron affinity that readily autodetaches.

Lanthanide(III) SMMs with cationic and anionic complex fragments formed by a Schiff base: structure, luminescence, magnetic properties and ab initio calculations.

The syntheses, structures, luminescence and magnetic properties of a new series of Ln(III) complexes of the formula [Ln(L)(H2O)2(DMF)2][Ln(L)2] (in which H2L is N,N'-ethylaminebis[1-phenyl-3-methyl-4-formylimino-2-pyrazoline-5-one]; Ln(III) - Gd (1), Tb (2), or Dy (3) ions). The crystal structures were determined by single-crystal X-ray diffraction measurements for all the above-mentioned complexes. The crystals of these compounds consist of cationic [Ln(L)(H2O)2(DMF)2]+ and anionic [Ln(L)2] moieties which form a 3D supramolecular architecture by the H-bonds and electrostatic forces. Luminescence emission in the visible range was observed for Tb(III) and Dy(III) compounds upon ligand sensitization, with moderate quantum yields of 3.2% for the Dy complex and 24.2% for the Tb analogue. Moreover the Tb(III) complex demonstrates triboluminescence activity. The dynamic magnetization studies revealed that 1 and 2 demonstrate field-induced magnetic relaxation with effective energy barriers, ΔE|kB = 24 K (for 1) and 85 K (for 2), while the Dy complex 3 exhibits slow relaxation of magnetization in zero field with an activation energy of 256 K.

Experimental and Theoretical Investigations of the Fragmentation of Ethylenediamine Induced by Low-Energy (

Ethylenediamine is industrially used as an intermediate for the fabrication of many products. The development of new methodologies for synthesis compatible with the environment and sustainability, such as cold plasma processes, implicates reactions induced by nonthermal electrons. In this contribution, we study the interaction of low-energy (<10 eV) electrons with ethylenediamine. We show that electrons induce the fragmentation of the molecule into various anion fragments and associated neutral counterparts via dissociative electron attachment. The fragmentation mechanisms and energetics are discussed in the frame of DFT calculations. The fragmentation processes are quantified by the estimation of the cross sections and the branching ratios for competitive accessible dissociation routes.

Does deprotonated benzoic acid lose carbon monoxide in collision-induced dissociation?

Decarboxylation is known to be the major fragmentation pathway for the deprotonated carboxylic acids in collision-induced dissociation (CID). However, in the CID mass spectrum of deprotonated benzoic acid (m/z 121) recorded on a Q-orbitrap mass spectrometer, the dominant peak was found to be m/z 93 instead of the anticipated m/z 77. Based on theoretical calculations, 18 O-isotope labeling and MS3 experiments, we demonstrated that the fragmentation of benzoate anion begins with decarboxylation, but the initial phenide anion (m/z 77) can react with trace O2 in the mass analyzer to produce phenolate anion (m/z 93) and other oxygen-containing ions. Thus oxygen adducts should be considered when annotating the MS/MS spectra of benzoic acids.

Synthesis of Waixenicin A: Exploring Strategies for Nine-Membered Ring Formation.

We present a comprehensive account on our efforts behind the recently published synthesis of waixenicin A. Our approach for constructing the dihydropyran ring relied on an Achmatowicz rearrangement. For the assembly of the nine-membered ring, four distinct strategies were investigated. Our initial attempts using radical-based addition/fragmentation reactions targeting the C7-C11 bond proved unsuitable for accessing the 6/9-bicycle. By employing anionic fragmentation conditions at the furfuryl alcohol stage, we successfully reached a 5/9-bicycle. However, subsequent ring-expansion was unsuccessful. Alternative approaches, such as Nozaki-Hiyama-Kishi or Heck reactions to connect the C6-C7 bond, also encountered difficulties, with no nine-membered ring formation observed. Our first breakthrough came from our attempts to install the C5-C6 bond via an intramolecular alkylation. Surprisingly, subsequent functional group modifications proved unexpectedly challenging, necessitating a redesign of our synthetic route. Drawing from all our investigations, we concluded that construction of the C9-C10 bond would enable efficient nine-membered ring alkylation and would facilitate the installation of the desired substitution pattern along the southern periphery. Exploration of this strategy yielded further surprises but ultimately led to the successful synthesis of waixenicin A and 9-deacetoxy-14,15-deepoxyxeniculin. For the latter compound, a bioinspired one-step rearrangement to xeniafauranol A was achieved.

Anion effect on absorption and photovoltaic efficiency of some complex iodobismuthates

The photovoltaic use of iodoplumbates perovskites is limited because of lead toxicity and its instability. An alternative is the iodobismuthate compounds. In this work, the microscopically optical properties of two iodobismuthate compounds, (C28H40N4)(Bi4I18) and (C6H8N)(BiI5), are obtained using first principles. To relate these properties to the structure and to analyze the effect of the iodine linker atoms in these compounds, we split the absorption coefficients into an exact many-specie expansion. The results indicate that the optical gap and the optical properties are determined by the anionic fragment of these compounds. The presence of iodine linker atoms results in a reduction in the energy gap and a larger absorption near the gap.

Mixed-ligand complex [Cu4(bpy)4(PO4)2(CO3)(H2O)2]: synthesis, crystal structure and biological properties

The interaction in the system {Сu(OAc)2·H2O–phytic acid–2,2`-bipyridine (bpy)} in an aqueous-methanol solution led to the formation of a molecular mixed-ligand tetranuclear complex [(Cu4(bpy)4(PO4)2(CO3 )(H2O)2]13H2O (I), the structure of which was established based on the results of an X-ray diffraction experiment (CCDC 2262998). According to X-ray diffraction data, the molecule contains four nonequivalent Cu2+ cations, which coordinate two phosphate anions (PO43-, remaining as a result transformation of the phytate cycle), four neutral bpy, two water molecules and one carbonate anion fragment (CO32-). The presence of a large number of solvate water molecules in the outer coordination sphere created a hydrogen-bonded framework involved in the stabilization of the crystal packing. Study of antimycobacterial activity of I in against the non-pathogenic strain Mycolicibacterium smegmatis showed its high bioeffectiveness.

Effect of counterion on the catalytic activity of NHC-gold(I) in A3 coupling reactions

Synthetic A3-coupling represents an efficient and environmentally convenient procedure for the production of propargylamines, relevant intermediates for the preparation of pharmacologically active substances. Gold(I) complexes of general formula NHC-Au-X have been synthesized, characterized, and tested in the A3-coupling reaction of benzaldehyde, piperidine and phenylacetylene on varying the anionic fragment X as halogenide (Cl, Br, I), acetate (OAc), hexafluorophosphate (PF6) or phenylacetylide (-C≡CPh), with 5-dichloro[N-methyl, N’(2-hydroxy-2-phenyl)ethyl imidazole-2-ylidene as NHC ligand. The kinetic profiles were interpreted with DFT (Density Functional Theory) studies on bond dissociation energies (BDE) of the counterion as well as on the relative stability of the neutral NHC-Au-X complexes with respect to their ionic forms [Au(NHC)2]+[AuX2]−.

Fragmentation of the DNA Lesion 8-oxo-Guanine by Low-Energy Electrons.

8-oxo-Guanine is a mutagenic lesion produced by reactions involving reactive oxygen species and guanine in DNA. Its production induces mispairing between the canonical nucleobases during DNA replication such that various types of cancers are associated with the DNA lesion. Since radiation therapy is used in some cases, the interaction of low-energy electrons with 8-oxo-guanine can in turn produce other reactive species, which in principle could have either a detrimental or protective effect on the organism. Motivated by these facts, we report a comparative experimental study of electron-induced fragmentation of guanine and 8-oxo-guanine, along with a theoretical study of the π* shape resonances and bound anion states, which may trigger those dissociation reactions. The electron-induced fragmentation of 8-oxo-guanine is remarkably distinct from the native form. More complex reactions were observed for the oxidized species, which may produce several anion fragments at very low energies (∼0 eV). The dehydrogenated parent anion, which is already a minor fragment in guanine, was completely suppressed in 8-oxo-guanine. The calculated thermodynamical thresholds also suggest that NH2 elimination in guanine, at sub-excitation energies, proceeds via a complex reaction involving rearrangement steps.

Mass-selected ion-molecule cluster beam apparatus for ultrafast photofragmentation studies.

We describe an apparatus for investigating the excited-state dissociation dynamics of mass-selected ion-molecule clusters by mass-resolving and detecting photofragment-ions and neutrals, in coincidence, using an ultrafast laser operating at high repetition rates. The apparatus comprises a source that generates ion-molecule clusters, a time-of-flight spectrometer, and a mass filter that selects the desired anions, and a linear-plus-quadratic reflectron mass spectrometer that discriminates the fragment anions after the femtosecond laser excites the clusters. The fragment neutrals and anions are then captured by two channeltron detectors. The apparatus performance is tested by measuring the photofragments: I-, CF3I-, and neutrals from photoexcitation of the ion-molecule cluster CF3I·I- using femtosecond UV laser pulses with a wavelength of 266nm. The experimental results are compared with our ground state and excited state electronic structure calculations as well as the existing results and calculations, with particular attention to the generation mechanism of the anion fragments and dissociation channels of the ion-molecule cluster CF3I·I- in the charge-transfer excited state.

Chemische Synthese mit Gasförmigen Molekularen Ionen: Gewinnung von [B12Br11N2]− aus einem Massenspektrometer

AbstractIn der Massenspektrometrie werden häufig kurzlebige Ionen in der Gasphase beobachtet, die zuvor nicht in Lösung oder in der Bulkphase synthetisiert worden sind. Diese schwer zugänglichen Ionen werden daher oft primär als analytisch wertvoll für grundlegende Gasphasenstudien angesehen. Hier wird der Nachweis erbracht, dass die Produkte von Ionen‐Molekül‐Reaktionen in Massenspektrometern auf Oberflächen gesammelt werden können, um kondensierte Materie zu erzeugen und somit als Bausteine für die Synthese neuer Verbindungen zu dienen. Das hochreaktive Fragmentanion [B12Br11]− wurde in einem Massenspektrometer erzeugt und in Anwesenheit von molekularem Stickstoff in [B12Br11N2]− umgewandelt, gefolgt von seiner Massenselektion und sanften Deposition auf Oberflächen. Die Molekularstruktur des bisher nie zuvor synthetisierten [B12Br11N2]− wurde mit konventionellen Methoden der Molekularanalyse, einschließlich magnetischer Kernresonanz‐ und Infrarotspektroskopie, bestätigt. Das [B12Br11N2]−‐Ion ist auf Oberflächen und in Lösung bei Raumtemperatur stabil, aber Erhitzen führt zur Abspaltung von N2 und ermöglicht den Zugang zu dem hochreaktiven Zwischenprodukt [B12Br11]− in der kondensierten Phase, das beispielsweise als Reagenz für elektrophile aromatische Substitutionen weiterverwendet werden kann. Die Isolierung von [B12Br11N2]− erweitert somit das Repertoire der verfügbaren Diazo‐Ionen, die als vielseitige Zwischenprodukte bei verschiedenen chemischen Umwandlungen eingesetzt werden können.

Chemical Synthesis with Gaseous Molecular Ions: Harvesting [B12 Br11 N2 ]- from a Mass Spectrometer.

Mass spectrometry frequently reveals the existence of transient gas phase ions that have not been synthesized in solution or in bulk. These elusive ions are, therefore, often considered to be primarily of analytical value in fundamental gas phase studies. Here, we provide proof-of-concept that the products of ion-molecule reactions in mass spectrometers may be collected on surfaces to generate condensed matter and thus serve as building blocks to synthesize new compounds. The highly reactive fragment anion [B12 Br11 ]- was generated in a mass spectrometer and converted to [B12 Br11 N2 ]- in the presence of molecular nitrogen followed by its mass-selection and soft-landing on surfaces. The molecular structure of [B12 Br11 N2 ]- , which has not been synthetically obtained before, was confirmed by conventional methods of molecular analysis, including nuclear magnetic resonance and infrared spectroscopy. The [B12 Br11 N2 ]- ion is stable on surfaces and in solution at room temperature, but thermal annealing induces elimination of N2 and provides access to the highly reactive intermediate [B12 Br11 ]- in the condensed phase, which can be further used as a reagent, for example, for electrophilic aromatic substitutions. Thus, isolation of [B12 Br11 N2 ]- expands the repertoire of the available diazo ions that can be employed as versatile intermediates in various chemical transformations.