Electrocardiography (ECG) plays a pivotal role in monitoring cardiac health, yet the manual analysis of ECG signals is challenging due to the complex task of identifying and categorizing various waveforms and morphologies within the data. Additionally, ECG datasets often suffer from a significant class imbalance issue, which can lead to inaccuracies in detecting minority class samples. To address these challenges and enhance the effectiveness and efficiency of cardiac arrhythmia detection from imbalanced ECG datasets, this study proposes a novel approach. This research leverages the MIT-BIH arrhythmia dataset, encompassing a total of 109,446 ECG beats distributed across five classes following the Association for the Advancement of Medical Instrumentation (AAMI) standard. Given the dataset’s inherent class imbalance, a 1D generative adversarial network (GAN) model is introduced, incorporating the Bi-LSTM model to synthetically generate the two minority signal classes, which represent a mere 0.73% fusion (F) and 2.54% supraventricular (S) of the data. The generated signals are rigorously evaluated for similarity to real ECG data using three key metrics: mean squared error (MSE), structural similarity index (SSIM), and Pearson correlation coefficient (r). In addition to addressing data imbalance, the work presents three deep learning models tailored for ECG classification: SkipCNN (a convolutional neural network with skip connections), SkipCNN+LSTM, and SkipCNN+LSTM+Attention mechanisms. To further enhance efficiency and accuracy, the test dataset is rigorously assessed using an ensemble model, which consistently outperforms the individual models. The performance evaluation employs standard metrics such as precision, recall, and F1-score, along with their average, macro average, and weighted average counterparts. Notably, the SkipCNN+LSTM model emerges as the most promising, achieving remarkable precision, recall, and F1-scores of 99.3%, which were further elevated to an impressive 99.60% through ensemble techniques. Consequently, with this innovative combination of data balancing techniques, the GAN-SkipNet model not only resolves the challenges posed by imbalanced data but also provides a robust and reliable solution for cardiac arrhythmia detection. This model stands poised for clinical applications, offering the potential to be deployed in hospitals for real-time cardiac arrhythmia detection, thereby benefiting patients and healthcare practitioners alike.