Analysis Of Microbial Community Structure Research Articles

Controlled mechanism and removal performance of phosphorus in black and odorous water bodies by Fe-based layered double hydroxides

The effective approach for controlling internal phosphorus loading remains a longstanding challenge to the maintenance of remediated black and odorous water bodies. Here, three Fe-based LDHs materials were developed for alleviating the phosphorus pollution in black and odorous water through synergistic functions of phosphate adsorption, controlled release of phosphorus, and microbial metabolism. The mechanism of phosphate removal in overlying water is mainly specific electrostatic attraction and coordination. After the addition of Fe-based LDHs, the water quality indexes of black and odorous water bodies were significantly improved, including TP concentration (from 0.8 to 0.2 mg/L), the dissolved oxygen content (from 0.1 to 3.0 mg/L), COD, turbidity (from 34 to 18 FTU), and redox potential. Moreover, the morphology and physicochemical properties of sediments were regulated by Fe-based LDHs. Fluffier and smaller sediments particles due to the destruction of extracellular polymeric substances structure, which was beneficial to the release of endogenous phosphorus. Furthermore, the results of microbial community structure analysis illustrated that Proteobacteria and Dechloromonas played the most important role in phosphorus elimination in Fe-based LDHs system. That is, based on the biocompatibility of Fe-based LDHs, which act as a medium of the electron transfer in the microbial metabolism, combining with microorganisms for the synergistic remediation of black and odorous water bodies. Our study emphasizes the feasibility of Fe-based LDHs materials for the remediation of internal phosphorus loads in black and odorous water bodies, towards sustainable control.

Gut microbiome signatures of extreme environment adaption in Tibetan pig

Tibetan pigs (TPs) can adapt to the extreme environments in the Tibetan plateau implicated by their self-genome signals, but little is known about roles of the gut microbiota in the host adaption. Here, we reconstructed 8210 metagenome-assembled genomes from TPs (n = 65) living in high-altitude and low-altitude captive pigs (87 from China—CPs and 200 from Europe—EPs) that were clustered into 1050 species-level genome bins (SGBs) at the threshold of 95% average nucleotide identity. 73.47% of SGBs represented new species. The gut microbial community structure analysis based on 1,048 SGBs showed that TPs was significantly different from low-altitude captive pigs. TP-associated SGBs enabled to digest multiple complex polysaccharides, including cellulose, hemicellulose, chitin and pectin. Especially, we found TPs showed the most common enrichment of phyla Fibrobacterota and Elusimicrobia, which were involved in the productions of short- and medium-chain fatty acids (acetic acid, butanoate and propanoate; octanomic, decanoic and dodecanoic acids), as well as in the biosynthesis of lactate, 20 essential amino acids, multiple B vitamins (B1, B2, B3, B5, B7 and B9) and cofactors. Unexpectedly, Fibrobacterota solely showed powerful metabolic capacity, including the synthesis of acetic acid, alanine, histidine, arginine, tryptophan, serine, threonine, valine, B2, B5, B9, heme and tetrahydrofolate. These metabolites might contribute to host adaptation to high-altitude, such as energy harvesting and resistance against hypoxia and ultraviolet radiation. This study provides insights into understanding the role of gut microbiome played in mammalian high-altitude adaptation and discovers some potential microbes as probiotics for improving animal health.

Multi-parameter control-based operation strategy for mainstream deammonification in an integrated anaerobic biofilm reactor-step feed MBR

The mainstream deammonification of municipal wastewater has been recognized as one of the greatest challenges in wastewater engineering. The conventional activated sludge process has disadvantages of high energy input and sludge production. To tackle this situation, an innovative A-B process, where an anaerobic biofilm reactor (AnBR) functioned as the A stage for energy recovery, and a step-feed membrane bioreactor (MBR) functioned as the B stage for mainstream deammonification, was constructed for carbon-neutral wastewater treatment. For addressing the challenge associated with selective retention of ammonia-oxidizing bacteria (AOB) over nitrite oxidizing bacteria (NOB), a multi-parameter control-based operation strategy was developed with synergistic control of influent COD redistribution, dissolved oxygen (DO) concentration and sludge retention time (SRT) in the innovative AnBR – step-feed MBR system. Results showed that more than 85% of wastewater COD could be removed with the direct production of methane gas in the AnBR. A relatively stable partial nitritation, which is a prerequisite of anammox, was achieved with the successful suppression of NOB, leading to 98% of ammonium-N and 73% of total nitrogen removed. Anammox bacteria could well survive and enrich in the integrated system, and the contribution of anammox to the total nitrogen removal was more than 70% at optimal conditions. Reactions network involved in the nitrogen transformation in the integrated system was further constructed through the mass balance and microbial community structure analyses. Consequently, this study demonstrated a practically feasible process configuration with high operation and control flexibility towards stable mainstream deammonification of municipal wastewater.

Microbial community structure and diversity in fish-flower (mint) symbiosis

The fish-flower symbiosis model is an eco-friendly sustainable farming technology combining plants, fish and microorganisms in a recirculating aquaculture system. However, there are few studies on the structure and diversity of microbial communities in fish intestines, culture water and plant roots during fish-flower symbiosis. Here, we cultured carp (Cyprinus carpio), crucian carp (Carassius auratus) and grass carp (Ctenopharyngodon idella) with mint (Mentha spicala L.) and extracted total genomic DNA from intestinal microorganisms, culture-water microorganisms and root microorganisms for each fish species for high-throughput sequencing of 16S rRNA genes. Analysis of microbial community structure and diversity revealed changes in abundance of microbial genera in the intestines and culture water of each fish species, including changes in the dominant taxa. Pirellula, Truepera, Aquincola, Cetobacterium and Luteolibacter were widespread in the fish intestine, culture water and mint root system. This study revealed the effects of mint feeding on the structure and diversity of microbial communities of fish, water bodies and the mint root system during fish-flower symbiosis, providing a theoretical reference for the promotion and application of fish-flower (mint) symbiosis technology and healthy fish culture technology.

Evaluation of the respective contribution of anode and cathode for triclosan degradation in a bioelectrochemical system

In this work, the bioelectrochemical system (BES) is a feasible alternative for successfully degrading typical refractory emerging contaminant triclosan (TCS). A single-chamber BES reactor with an initial TCS concentration of 1 mg/L, an applied voltage of 0.8 V, and a solution buffered with 50 mM PBS degraded 81.4 ± 0.2% of TCS, exhibiting TCS degradation efficiency improvement to 90.6 ± 0.2% with a biocathode formed from a reversed bioanode. Both bioanode and biocathode were able to degrade TCS with comparable efficiencies of 80.8 ± 4.9% and 87.3 ± 0.4%, respectively. Dechlorination and hydrolysis were proposed as the TCS degradation pathway in the cathode chamber, and another hydroxylation pathway was exclusive in the anode chamber. Microbial community structure analysis indicated Propionibacteriaceae was the predominant member in all electrode biofilms, and the exoelectrogen Geobacter was enriched in anode biofilms. This study comprehensively revealed the feasibility of operating BES technology for TCS degradation.

Component and microbial community structure change of Huangjiu undergoing rancidification during pottery jar storage

ABSTRACT The effects of microbial contamination on the rancidity of Huangjiu (Chinese rice wine) during pottery jar storage were studied. With the increase in the rancidity of Huangjiu, the alcohol content decreased, while the conductivity increased significantly. The sour taste and umami taste of Huangjiu increased, leading to flavor deterioration. Meanwhile, the increase in biogenic amine content makes Huangjiu unfit for drinking. The changes in components showed that the degree of rancidity was related to the metabolism of organic acids and amino acids caused by contaminated microorganisms. According to the analysis of microbial community structure, more microorganisms were found in the severe rancid Huangjiu. This indicated that with the aggravation of the degree of rancidity, the community structure of the contaminated microorganisms becomes complex, and potentially pathogenic microorganisms such as Arcobacter species were detected. Therefore, the change of components of Huangjiu will also affect the community structure of contaminated microorganisms.

Effects of rumen microorganisms on the decomposition of recycled straw residue.

Recently, returning straw to the fields has been proved as a direct and effective method to tackle soil nutrient loss and agricultural pollution. Meanwhile, the slow decomposition of straw may harm the growth of the next crop. This study aimed to determine the effects of rumen microorganisms (RMs) on straw decomposition, bacterial microbial community structure, soil properties, and soil enzyme activity. The results showed that RMs significantly enhanced the degradation rate of straw in the soil, reaching 39.52%, which was 41.37% higher than that of the control on the 30th day after straw return. After 30 d, straw degradation showed a significant slower trend in both the control and the experimental groups. According to the soil physicochemical parameters, the application of rumen fluid expedited soil matter transformation and nutrient buildup, and increased the urease, sucrase, and cellulase activity by 10%‒20%. The qualitative analysis of straw showed that the hydroxyl functional group structure of cellulose in straw was greatly damaged after the application of rumen fluid. The analysis of soil microbial community structure revealed that the addition of rumen fluid led to the proliferation of Actinobacteria with strong cellulose degradation ability, which was the main reason for the accelerated straw decomposition. Our study highlights that returning rice straw to the fields with rumen fluid inoculation can be used as an effective measure to enhance the biological value of recycled rice straw, proposing a viable solution to the problem of sluggish straw decomposition.

Strengthening in microbiota dynamics and C, N, S transformation induced by novel synthesized pyrite/PHBV composites for advanced nitrogen and phosphate removal: Overlooked sulfate reduction process

Fine-grained pyrites are difficult to be denitrified under natural environment due to chemical oxidation with O2. In this study, the pyrite/PHBV composites were synthesized through high-temperature melting and realized nitrogen and phosphate removal under natural aerobic conditions. Results showed that pyrite/PHBV-40 composites had the highest denitrification rate of 0.61 mg NO3−–N /(L·h) with low SO42− production, and its removal efficiency of nitrogen and phosphorus was 98% and 41%, respectively. Microbial community structure analysis revealed that the enrich sulfate-reducing bacteria (SRB) on the pyrite/PHBV-40 composites demonstrated that the sulfate reduction driven by SRB enhanced denitrification process, and thereby the S cycle could underpin the potential self-sustainability of pyrite/PHBV-40 composites. Co-occurrence network analysis showed that Fe oxidizers/reducers (e.g., Ferruginibacter/Geobacter) and SRB (e.g., Desulfovibrio) were the keystone species in microbial community. Bugbase analysis showed that formed biofilms mainly consisted of aerobic and facultative anaerobic strains, which was corresponding to structure of biofilm including aerobic and anoxic layer. Partial mantel test revealed the total Fe and nutrients (e.g., N and P) are the drivers in OTU and phenotype composition, respectively. Metabolic pathway analysis suggested that pyrite/PHBV composites may not only accelerate glycolysis with rapid hydrolysis of PHBV, but also enhance the TCA cycle with high production of ATP and NADH. The final product of nitrate reduction is N2O or NO, and the cysJ gene play an important role in sulfate reduction in pyrite/PHBV systems. Overall, the novel synthesized pyrite/PHBV composites are an ideal functional material with high denitrification rate, no secondary pollution and long service life. Our study highlights pyrite/PHBV-induced strength in microbiota dynamics and C, N, S transformation, therein, the sulfate reduction process cannot be overlooked.

High Abundance of Candidatus Arthromitus in Intestinal Microbiota of Seriolella violacea (Palm Ruff) under Reared Conditions

Intestinal microbiota has been involved in several processes that benefit the host, such as digestion, nutrient metabolism, resistance to pathogens colonization and immune function. In this study, we investigated the diversity, composition and functional prediction of microbiota of reared Seriolella violacea (palm ruff) in the same cohort sampled at different times (7-, 8- and 9-month-old). Microbial community structure analyses, using 16S rRNA amplicon sequencing, revealed that the intestinal microbiota was dominated by the phyla Firmicutes, Proteobacteria, Fusobacteria and Tenericutes. At the genus level, Candidatus Arthromitus was the most abundant in all sampled timepoints, representing in average 78% of the bacterial community (ranging from 18 to 98%), corresponding to segmented filamentous bacteria, which are interesting because they have been associated with the maturation of immune responses in the gut and protecting the host from bacterial infections. The comparisons of the intestinal microbiota among the three groups showed differences in abundance of bacterial taxa and also in alpha diversity indexes (Shannon and Simpson), as well as beta diversity metrics (weighted and unweighted UniFrac). Potential functions of the intestinal microbiota of palm ruff were retrieved using Philipin and Tax4fun and these analyses revealed high levels of genes for sugar metabolism. To our knowledge, this study represents the first description of the intestinal microbiota of S. violacea.

Microbial Community Structure and Predictive Functional Analysis in Reclaimed Soil with Different Vegetation Types: The Example of the Xiaoyi Mine Waste Dump in Shanxi

We explored the characteristics of soil bacterial communities and their ecological functions under different types of vegetation reclamation in open-pit mines on the Loess Plateau, which is the guiding significance for the selection of vegetation and the improvement of restoration effect in mining areas. The research object was to reclaim the soil of the aluminum mine waste dump in Xiaoyi County, Shanxi. The soil characteristics were measured under different types of vegetation reclamation. The soil bacterial community under different vegetation reclamation was measured using the 16S rRNA gene high-throughput sequencing technology. The ecological function was predicted using the PICRUSt method. The correlation between soil physical and chemical properties and bacterial community structure and function was analyzed. From the results, (1) the bacterial compositions of the reclaimed soil samples were 33 phyla, 90 classes, 121 orders, 207 families, 298 genera, and 140 species. The abundance and diversity of the soil microbial community showed the rule of yellow rose > lespedeza and sweet wormwood herb > alfalfa. (2) Proteobacteria were the dominant bacteria in alfalfa and sweet wormwood herb samples, accounting for 36.09–43.36%. Proteobacteria and actinobacteria were the dominant bacteria in the yellow rose and lespedeza samples accounted for 53.34–53.39%. α-Proteobacteria, actinobacteria, and β-proteobacteria were the dominant bacteria of the four vegetation types. The relative abundance of the α-proteobacteria and β-proteobacteria was positively correlated with soil organic carbon (SOC) and negatively correlated with soil total kalium (TK). Actinobacteria were positively correlated with available kalium (AK) and negatively correlated with SOC and total nitrogen (TN). (3) There was no difference in the primary functions of the soil bacterial community after the reclamation of different plants, and the main functions were metabolism, genetic information processing, and environmental information processing, with the function abundance accounting for 81.52%. (4) The abundance of functional genes in the metabolism of other amino acids, folding, sorting, and degradation and glycan biosynthesis and metabolism were relatively rich in the rhizosphere soil of yellow rose. The abundance of functional genes in signal molecules and interaction, transport, and catabolism in the rhizosphere soil of lespedeza was the highest. The abundance of functional genes in carbohydrate metabolism, translation, and energy metabolism in the rhizosphere soil of alfalfa was the highest. Therefore, there were significant differences in the structure and function of rhizosphere soil microbial communities among yellow rose, lespedeza, sweet wormwood herb, and alfalfa, and they were also affected by the soil properties. Hence, we concluded that the differences and diversity of soil microbial structure and function can help select plants for the sustainable development of soil remediation in mining areas.

Microbial community structure analysis of hypersaline niches and elucidation of their role in the biogeochemical cycling of nitrogen, sulphur and methane

Some hypersaline ecosystems exist in the form of halite, the salt deposits formed due to the evaporation of salt water. Over a period of time, the salt-saturated hypersaline lakes or seas get dried up, leading to the deposition of halite and other significant minerals. The ancient halite deposits may contain halophiles from the same era as the surrounding minerals. In the current study, the taxonomic diversity of halite deposited in the Drang Mine was analysed and compared with the microbiome of similar ecosystems, i.e., a nearby brine, Pangong Lake and Sambhar Lake. The analysis showed that Proteobacteria was the most abundant phylum across all the samples. The phylum Firmicutes exhibited the second-highest abundance in the Drang ecosystem, while Bacteroidetes were more numerous than Firmicutes in other selected niches. The lowest species richness based on the Chao I index was found in Sambhar Lake, likely because of the presence of two major extreme parameters, namely high salinity and alkaline pH. The species diversity calculated by Shannon and Simpson indices was lowest in Drang Mine, possibly because of the very high salt concentration in halite ecosystems, as also corroborated by physiochemical analysis. The beta-diversity analysis based on the Bray-Curtis matrix showed the formation of a separate cluster of Drang Mine samples, pointing towards its unique bacterial community structure as compared to other samples. The current study not only aided in the generation of baseline information about the taxonomic diversity of halite deposited in the Drang Mine but also highlighted its different bacterial community structure when compared to other similar ecosystems. It also indicated their potential role in N, S and CH4 biogeochemical cycling.

Remediation of the black-odor water body by aquatic plants with plant growth-promoting Rhizobacteria: Lab and pilot tests

To explore an effective, environmental, rapid operating method to repair black and odor water bodies, water samples and sediment samples collected from a polluted municipal lake in Daqing, China, were directly tested in transparent barrels (10 L). Seven groups of optimizing parameters obtained the optimal operating method, and the max removal rate of COD, NH4+-N, NO3−-N, and TP were achieved (89.18%, 59.65%, 69.50%, and 75.61%) by using aquatic plants with plant growth-promoting Rhizobacteria (PGPR). To further verify the method's effectiveness, lager scale tests were conducted based on a water tank (216 L), and similar removal rates were obtained within 48 h. The water quality index and microbial community structure analysis revealed the mechanisms of the interaction among plants, microorganisms, and pollutants and the main biological processes during water body remediation. Finally, the cost of water body remediation by using this method was estimated.

Using intermittent moving aeration to repair hypereutrophic pond: nutrient removal efficiency and microbial diversity analysis.

This study presents a novel perspective on the control of eutrophication by moving aeration through a ten-month pilot field study. Moving aeration significantly reduced the relative abundance of class Cyanobacteria by 14.01%, effectively preventing cyanobacteria from predominating in the overlying water. As a result, the deposition of TOC, N, and P in the surface of the sediment decreased by 90%, 73%, and 93% in comparison to the control group. The analysis of microbial community structure based on 16S rRNA high-throughput sequencing showed that the order Bacillales and Micrococcales contributed to nitrogen removal significantly increased by 19.44% and 3.94%, respectively, while the order Steroidobacterales, Rhizobiales, and Microtrichales involved in the immobilization of carbon and nitrogen were significantly decreased by 4.03%, 2.69%, and 2.3% in the aeration group, respectively. Variation in the number of functional microorganisms based on the MPN method revealed that moving aeration promoted the growth of nitrifying bacteria and denitrifying bacteria. These findings demonstrated that moving aeration is effective in repairing eutrophic water and eliminating endogenous N pollutants.

High-Density Microarray Analysis of Microbial Community Structures in Membrane Bioreactor at Short Sludge Retention Time

Membrane bioreactors (MBR) have become prevalent in wastewater treatment because of their high effluent quality and low sludge generation. Sludge retention time (SRT) is an important parameter in the operation of MBR, and it has a direct effect on the microbial community. In this study, microarrays were used to analyze the microbial communities of three different MBRs at short SRTs. The results showed that MBR at SRT 5 days (CS5) has the highest operational taxonomic units (OTUs) richness, but the lowest diversity and uniformity compared to SRT 3 days at continuous CS3 and the sequencing batch (SS3). Proteobacteria were the dominant phylum of three reactors. Bacteroidetes were the second dominant phylum in MBRs at the continuous model, instead of Actinobacteria at the sequencing model. At the class level, the dominant group of Proteobacteria exhibited a remarkable difference between the three MBRs. γ-Proteobacteria was the dominant group in CS5 and CS3, while α-Proteobacteria was the main group in SS3. The samples from the three MBRs had similar compositions of α-, β- and δ-Proteobacteria. However, γ-Proteobacteria showed different community compositions at the order level between the three MBRs. Enterobacteriales were the dominant group in CS5 and CS3, while Pseudomonadales were the dominant group in SS3. The bacterial community concentration of SRT 5 days was generally higher than that of the other two MBRs. The community composition of CS5 was significantly different from that of CS3 and SS3, and the phylogenetic relationships of the three MBRs were relatively different.

Treatment of nitrogen-rich wastewater by mixed aeration combined with bioaugmentation in a sequencing batch biofilm reactor: Biofilm formation and nitrogen-removal capacity analysis

The mixed aerated and bioaugmented sequencing batch biofilm reactor (SBBR) was developed to improve the efficiency of nitrogen-rich wastewater treatment, and the mechanism of biofilm formation and nitrogen removal was analyzed. The results showed that the addition of aerobic denitrifiers could shorten the start-up time and significantly improve the biofilm formation ability of SBBRs. The presence of nanobubbles could make the biofilm more compact and secrete more EPS, which promoted the activity and stability of the biofilm. During the stable operation stage, the bioaugmented SBBR under mixed aeration mode showed the best nitrogen removal performance and the removal rates of NH4+-N (95.65) and TN (94.88%） were increased by 19.86% and 14.36% compared with the control group, respectively. Microbial community structure and nitrogen metabolism pathway analysis revealed that strain ZS1 colonized the reactor. Hyphomonas, Defluviicoccus and Hydrogenophaga played important roles in N removal in the mixed aerated and bioaugmented SBBR. Meanwhile, the suitable oxidative environment created by mixed aeration made autotrophic nitrifiers（mainly Nitrospira and Nitrosomonas）and aerobic denitrifiers (mainly Hydrogenophaga, Hyphomonas and Pseudofulvimonas) coexist successfully, increasing the relative abundance of the key functional genes (amoABC, hao, napAB genes) in nitrification and denitrification processes to improve the N removal performance. Furthermore, mixed aeration combined with bioaugmented stimulated the nirA, gltBD and GLUD genes, thus promoting the process of nitrogen assimilation and providing a pathway of the direct removal of NH4+-N.

Characterization of 1,4-dioxane degrading microbial community enriched from uncontaminated soil.

1,4-Dioxane is a contaminant of emerging concern that has been commonly detected in groundwater. In this study, a stable and robust 1,4-dioxane degrading enrichment culture was obtained from uncontaminated soil. The enrichment was capable to metabolically degrade 1,4-dioxane at both high (100 mg L-1) and environmentally relevant concentrations (300 μg L-1), with a maximum specific 1,4-dioxane degradation rate (qmax) of 0.044 ± 0.001 mg dioxane h-1 mg protein-1, and 1,4-dioxane half-velocity constant (Ks) of 25 ± 1.6 mg L-1. The microbial community structure analysis suggested Pseudonocardia species, which utilize the dioxane monooxygenase for metabolic 1,4-dioxane biodegradation, were the main functional species for 1,4-dioxane degradation. The enrichment culture can adapt to both acidic (pH 5.5) and alkaline (pH 8) conditions and can recover degradation from low temperature (10°C) and anoxic (DO < 0.5 mg L-1) conditions. 1,4-Dioxane degradation of the enrichment culture was reversibly inhibited by TCE with concentrations higher than 5 mg L-1 and was completely inhibited by the presence of 1,1-DCE as low as 1 mg L-1. Collectively, these results demonstrated indigenous stable and robust 1,4-dioxane degrading enrichment culture can be obtained from uncontaminated sources and can be a potential candidate for 1,4-dioxane bioaugmentation at environmentally relevant conditions. KEY POINTS: •1,4-Dioxane degrading enrichment was obtained from uncontaminated soil. • The enrichment culture could degrade 1,4-dioxane to below 10 μg L-1. •Low Ks and low cell yield of the enrichment benefit its application in bioremediation.

Correlational Analysis of the Physicochemical Indexes, Volatile Flavor Components, and Microbial Communities of High-Temperature Daqu in the Northern Region of China.

Daqu is a microbial-rich baijiu fermentation starter. The high-temperature Daqu plays an essential role in the manufacturing of sauce-flavored baijiu. However, few studies have focused on three kinds of high-temperature Daqu (white, yellow, and black Daqu) in northern China. In this study, the physicochemical indexes, volatile flavor compounds, and microbial characteristics of the three different colors of high-temperature Daqu in northern China were comparatively analyzed to reveal their potential functions. White Daqu (WQ) exhibited the highest liquefying power and starch, and black Daqu (BQ) showed the highest saccharifying and esterifying powers. A total of 96 volatile components were identified in the three types of Daqu, and the contents of the volatile components of yellow Daqu (YQ) were the highest. The microbial community structure analysis showed that Bacillus and Byssochlamys were dominant in BQ, Kroppenstedtia and Thermoascus were dominant in WQ, and Virgibacillus and Thermomyces dominated the YQ. The RDA analysis revealed the correlation between the dominant microorganisms and different physicochemical indexes. The Spearman correlation analysis indicated that Oceanobacillus, Saccharopolyspora, Staphylococcus, Pseudogracilibacillus, Byssochlamys, and Thermomyces showed positive correlations with part of the majority of the key volatile flavor compounds. This work provides a scientific basis for the actual production of different colors of high-temperature Daqu in the northern region of China for sauce-flavored baijiu.

Particle-attached Microbes in Eelgrass Vegetation Areas Differ in Community Structure Depending on the Distance from the Eelgrass Bed.

Zostera marina (eelgrass) is a submerged flowering plant often found in the coastal areas of Japan. Large amounts of suspended particles form in highly productive environments, such as eelgrass beds, and the behavior of these particles is expected to affect the surrounding microbial community. We investigated the microbial community structure of suspended particles in three eelgrass fields (Ikuno-Shima Is., Mutsu Bay, and Nanao Bay) and inferred the formation and dynamics of suspended particles from a microbial community structure ana-lysis. Seawater samples were collected directly above each eelgrass bed (eelgrass-covering) and from locations dozens of meters away from the eelgrass bed (bare-ground). In consideration of the two different lifestyles of marine microbes, microbial communities were obtained from particle-attached (PA) and free-living (FL) states. Differences in microbial diversity and community structures were observed between PA and FL in all eelgrass beds. The FL microbial community was similar between the two sampling points (eelgrass-covering and bare-ground), whereas a significant difference was noted in the microbial community structure of suspended particles between the two sampling points. This difference appeared to be due to the supply of organic matter from the eelgrass sea ground and leaf-attached detritus produced by microbial activity. In addition, the classes Flavobacteriia, Alphaproteobacteria, and Gammaproteobacteria were abundant in the PA and FL fractions. Furthermore, many sequences of the key groups (e.g., Planctomycetes and Verrucomicrobia) were exclusively detected in the PA fraction, in which they may circulate nutrients. The present results provide insights into the microbial communities of suspended particles and provide the first step towards understanding their biogeochemical impact on the eelgrass bed.

Biological treatment of cadmium (Cd2+)-containing wastewater with sulfate as the electron acceptor and its microbial community

The pollution of cadmium (Cd) to environment is becoming increasingly serious. In this study, the ability of the continuous flow bioreactor with sulfate as the electron acceptor to remove pollutants from Cd-containing wastewater was investigated. The results show that Cd2+ could be effectively removed and the concentration of Cd2+ in the anaerobic effluent is less than 0.01 ​mg/L. Cd can affect the decomposition of urea by anaerobic sludge. In addition, ammonia nitrogen could be also effectively removed with the removal rate was approximately 72.4%. The activated sludge mainly removed Cd through the precipitation of cadmium sulfide outside the bacteria after sulfide was generated by bacterial sulfate metabolism, facilitated continuous biological removal of Cd from wastewater. Microbial community structure analysis revealed Trichococcus and Hyphomicrobium mainly occurred in anaerobic and anoxic reaction, and Sulfurovum was unique to the sulfur oxidation reaction, with a content of 10.20% and the ability to oxidize sulfide. The content of Nitrosomonas in aerobic reaction zone reached 36.75%, but no nitrifying bacteria were detected. The technology in this study, which used sulfate as the electron acceptor for the continuous biological removal of Cd2+, has future engineering application value for the treatment of wastewater containing low concentrations of Cd.

Seasonal Changes Modulate the Rhizosphere of Desert Plant Species

Arid and semi-arid ecosystems are categorized as having degraded soils due to the limited availability of water and nutrients. The perennial shrubs in these regions have developed different ecological and physiological adaptations to cope with harsh conditions. The plant species vary in the chemical profile of their root exudates, which can induce variability in the microbial community in the rhizosphere. The present research has been conducted (i) to investigate the variation in composition, diversity, and structure of rhizosphere’s bacterial community of desert plants; (ii) to identify plant-specific effects on the rhizosphere microbial community structure; and (iii) to determine the influence of soil moisture on the rhizosphere’s microbial community and soil biological properties under stressful conditions. Ten desert plant species from the Cholistan desert were selected as test specimens. Bacterial communities from the rhizosphere of 10 plants of each species were explored. Soil samples were collected during monsoon (June–August) and dry months (March–May). Microbial community structure analyses were carried out through 16S rRNA sequencing by targeting V3 and V4 regions. Among tested plant species, the rhizosphere of Leptadenia pyrotechnica (S6 vs. S16), Aerva javanica (Burm. f.) Juss. ex Schult (S9 vs. S19), and Vachellia jacquemontii (Benth.) (S10 vs. S20) had greater microbial diversity in both seasons. Higher levels of microbial communities were found during monsoon season. Furthermore, Gammaproteobacteria were abundant in the rhizospheres of all studied plants during the monsoon season. In contrast, the rhizosphere was abundant with unidentified_Actinobacteria during the dry season. The rhizospheric soil was further analyzed for biological properties. The maximum microbial biomass carbon (165 mg kg–1) and microbial biomass nitrogen (6.7 mg kg–1) were found in the rhizosphere of Vachellia jacquemontii (Benth.) Benth during monsoon season. However, a minimum of microbial biomass carbon (119 mg kg–1) and microbial biomass nitrogen (4.2 mg kg–1) were found in the rhizosphere of Cleome pallida Kotschy during dry seasons. The diversified microbial community structure and biological properties enable desert plants to cope with adverse climate conditions.