The evaluation of soil quality in different altitudinal gradients, with vegetative and non-vegetative subareas, is crucial for proper soil functioning and optimal crop growth, thus contributing to the sustainability of agroecosystems. Although the altitudinal gradient significantly influences soil quality, the ability to predict this quality, expressed through an index, in soils with and without vegetative cover, is still insufficiently explored. This study employed the simple additive index (SQI) method to evaluate soil quality in Ecuador’s Jun Jun micro-watershed, Tungurahua region. Three altitude categories (<2800, 2800–2900, >2900 masl) were investigated, with 24 soil samples collected across both vegetated and non-vegetated areas. The indicators used included chemical and biological parameters such as soil organic carbon (OC), earthworm density (WD), earthworm biomass (WB), organic matter (OM), pH, and total nitrogen (TN). The results revealed that in areas with altitudinal gradients below 2800 masl, the soil quality index values were higher compared to other altitudes. In vegetated areas, a decrease in index values was observed as the altitudinal gradient increased, indicating a deterioration in soil quality with increasing altitude. These findings are significant in providing a quantitative assessment of the effects of altitudinal gradient and vegetative cover influence on soil quality.