Airport clusters are of great significance to the sustainable development of the civil aviation transportation industry. The study utilises common frontier and super-efficiency DEA methods to assess the efficiency of China’s six major airport groups. It then employs the Malmquist index method to analyse changes in airport productivity. The results highlight regional disparities in airport efficiency. The East China Airport Group and the Southwest Airport Group consistently demonstrate excellent efficiency values, while the North China Airport Group and the Northeast Airport Group have significant room for improvement. Most airports within the groups operate at low and ineffective levels, with efficiency initially increasing and then decreasing. Moreover, the technology gap ratio (TGR) for each airport group somewhat shows a downward trend. The Malmquist index indicates that the overall factor productivity of each airport has generally remained stable, with efficiency growth primarily dependent on scale efficiency. On average, technical efficiency has increased by 1.5%. However, in terms of technological changes, most airports have experienced technological regression, indicating insufficient focus on technological improvement. Therefore, it is crucial to prioritise technological innovation and enhance management efficiency to achieve efficiency improvements in airport clusters. It is necessary to formulate strategies accurately based on the specific conditions of different regions, promote coordinated development, foster regional exchanges and cooperation, address regional disparities, ensure sustainable development of China’s airport clusters, and establish a world-class airport cluster.