Acoustic communication through whistles is well developed in dolphins. However, little is known on how dolphins are using whistles because localizing the sound source is not an easy task. In the present study, the hyperbola method was used to localize the sound source using a two-hydrophone array. A combined visual and acoustic method was used to determine the identity of the whistling dolphin. In an aquarium in Mexico City where two adult bottlenose dolphins were housed we recorded 946 whistles during 22 days. We found that a dolphin was located along the calculated hyperbola for 72.9% of the whistles, but only for 60.3% of the whistles could we determine the identity of the whistling dolphin. However, sometimes it was possible to use other cues to identify the whistling dolphin. It could be the animal that performed a behavior named “observation” at the time whistling occurred or, when a whistle was only recorded on one channel, the whistling dolphin could be the animal located closest to the hydrophone that captured the whistle. Using these cues, 15.4% of the whistles were further ascribed to either dolphin to obtain an overall identification efficiency of 75.7%. Our results show that a very simple and inexpensive acoustic setup can lead to a reasonable number of identifications of the captive whistling dolphin: this is the first study to report such a high rate of whistles identified to the free swimming, captive dolphin that produced them. Therefore, we have a data set with which we can investigate how dolphins are using whistles. This method can be applied in other aquaria where a small number of dolphins is housed; though, the actual efficiency of this method will depend on how often dolphins spend time next to each other and on the reverberation conditions of the pool.