Total Nematode Abundance Research Articles

Effect of mine tailing on the spatial variability of soil nematodes from lead pollution in La Union (Spain)

The Cartagena–La Union mining district, exploited since the end of the 3rd century BC, was one of the world's largest lead producers in the 19th century. Although activity ceased in 1991, today mining residues pose a huge pollution problem. This study characterises lead contents (total and DPTA) and other soil parameters (N, P, K, pH, SOM, CaCO3, granulometric fraction, etc.) using multivariate geostatistical methods in relation to nematode diversity. In this work, trophic groups and metabolic footprints of soil nematodes were measured using 193 samples from the mining, natural and agricultural areas in this district. We explored the relationship between soil health and nematode communities. High lead concentrations were quantified: mean 8500mgkg−1 for total and 340mgkg−1 for DPTA in this mining area. Although nematode diversity was broad (81 taxa), their diversity, abundance and metabolic footprints significantly reduced in the mining area. Significant differences in the nematode community structure were observed, and the relative abundance of predators was sensitive to mine and agricultural activities, whilst omnivores reduced only in the agricultural area, and bacterial feeders exhibited a differential response to both anthropogenic disturbances. The total abundance of nematodes, trophic groups and c–p groups correlated negatively with soil Pb contents, and a positive relationship was found with SOM and N, P and K contents.

Soil Nematode Responses to Increases in Nitrogen Deposition and Precipitation in a Temperate Forest

The environmental changes arising from nitrogen (N) deposition and precipitation influence soil ecological processes in forest ecosystems. However, the corresponding effects of environmental changes on soil biota are poorly known. Soil nematodes are the important bioindicator of soil environmental change, and their responses play a key role in the feedbacks of terrestrial ecosystems to climate change. Therefore, to explore the responsive mechanisms of soil biota to N deposition and precipitation, soil nematode communities were studied after 3 years of environmental changes by water and/or N addition in a temperate forest of Changbai Mountain, Northeast China. The results showed that water combined with N addition treatment decreased the total nematode abundance in the organic horizon (O), while the opposite trend was found in the mineral horizon (A). Significant reductions in the abundances of fungivores, plant-parasites and omnivores-predators were also found in the water combined with N addition treatment. The significant effect of water interacted with N on the total nematode abundance and trophic groups indicated that the impacts of N on soil nematode communities were mediated by water availability. The synergistic effect of precipitation and N deposition on soil nematode communities was stronger than each effect alone. Structural equation modeling suggested water and N additions had direct effects on soil nematode communities. The feedback of soil nematodes to water and nitrogen addition was highly sensitive and our results indicate that minimal variations in soil properties such as those caused by climate changes can lead to severe changes in soil nematode communities.

Effects of 17-α-estradiol on a free-living marine nematode community: a microcosm experiment

A microcosm experiment was used to examine the effects of 17-α-estradiol on a nematode community. Four 17-α-estradiol concentrations (0.15, 0.31, 0.62 and 1.24 ppm) were tested, and effects were examined after 30 days. Significant differences were noted between nematode assemblages from the control and those from 17-α-estradiol treatments. Total nematode abundance, Shannon–Wiener index and evenness were affected by 17-α-estradiol contamination, but species richness was unaffected. Chromadorina metulata and Ascolaimus elongatus were eliminated at all doses tested and seemed to be intolerant to estradiol. Kraspedonema octogoniata decreased at all doses and could be categorised as sensitive to estradiol contamination. Spirinia gerlachi increased at all doses tested and seemed to be an opportunistic species at the doses tested.

Interactive effects of elevated ozone and UV-B radiation on soil nematode diversity

Ultraviolet-B (UV-B) radiation and elevated tropospheric ozone may cause reductions in the productivity and quality of important agricultural crops. However, research regarding their interactive effect is still scarce, especially on the belowground processes. Using the open top chambers experimental setup, we monitored the response of soil nematodes to the elevated O3 and UV-B radiation individually as well as in combination. Our results indicated that elevated O3 and UV-B radiation have impact not only on the belowground biomass of plants, but also on the community structure and functional diversity of soil nematodes. The canonical correspondence analysis suggested that soil pH, shoot biomass and microbial biomass C and N were relevant parameters that influencing soil nematode distribution. The interactive effects of elevated O3 and UV-B radiation was only observed on the abundance of bacterivores. UV-B radiation significantly increased the abundance of total nematodes and bacterivores in comparison with the control at pod-filling stage of soybean. Following elevated O3, nematode diversity index decreased and dominance index increased relative to the control at pod-filling stage of soybean. Nematode functional diversity showed response to the effects of elevated O3 and UV-B radiation at pod-bearing stage. Higher enrichment index and lower structure index in the treatment with both elevated O3 and UV-B radiation indicated a stressed soil condition and degraded soil food web. However, the ratios of nematode trophic groups suggested that the negative effects of elevated O3 on soil food web may be weakened by the UV-B radiations.

Non‐target effects of herbicides on soil nematode assemblages

Herbicides are used extensively to control weeds. However, little is known about the non-target effects of herbicides on soil nematode assemblages. The objective of this study was to determine whether herbicides affect the abundance of nematodes in specific trophic groups. Meta-analysis was performed, and the calculated effect size, lr, quantified the impact of herbicides on the abundance of total nematodes and five trophic groups (bacterivores, fungivores, plant parasites, omnivores and predators). Measurements of lr indicated that herbicides decreased abundance of both fungivores and predators; however, abundance of bacterivores, plant parasites and omnivores increased. Overall, total nematode abundance tended to increase in response to herbicide application. The decrease in predator abundance suggests that herbicide application disturbs soil food webs. The increase in bacterivore and decrease in fungivore abundance suggest that bacterivores are more tolerant and both fungivores and predators more sensitive to herbicide applications. Herbicides also have non-target effects on omnivores, which may be due to the increased amount of food resources for omnivores after weed control. Additionally, the use of herbicides may result in a risk of an increase in plant-parasitic nematode abundance.

Influence of different fertilization regimes on plant-parasitic nematodes in the black soil region of Northeast China

Plant-parasitic nematodes can cause serious plant diseases and adversely affect crop production. We investigated the temporal and vertical dynamics of plant-parasitic nematodes in northeast China to determine if long-term fertilizer application suppresses the population of plant-parasitic nematodes and influences their vertical distribution in the black soil region. The long-term fertilizer application lasted for 14 years, and included three treatments: pig manure combined with chemical fertilizer (MCF), chemical fertilizer (urea and ammonium phosphate, CF), and no fertilizer (NF). A 3-year corn-wheat-soybean rotation was grown on the field site, soil samples were obtained in the corn phase and nematodes were extracted, identified and counted. Six plant-parasitic nematode genera with relative abundance over 0.1% were found in this study. Heterodera was the dominant genus in all three fertilizer treatments, and its relative abundance was highest in NF (45.4%) and lowest in MCF (32.8%). Fertilizer application had a significant effect on abundance of total soil nematodes but not on either plant-parasitic nematodes or Heterodera. Significant differences in the abundance of total soil nematodes, plant-parasitic nematodes and Heterodera were observed among soil depths and interaction of fertilizer × soil depth. Total soil nematodes were mainly distributed in the 0–20 cm soil layer, and plant-parasitic nematodes and Heterodera were mostly distributed in the 10–30 cm soil layer. Fertilizer application did not show a significant effect on plant-parasitic nematodes or Heterodera at any of the sampling depths from 0 to 80 cm. The results indicated that fertilizer has no effective control on plant-parasitic nematodes when dominant genera and their respective plant hosts exist in relatively high abundance.

Nematodes for Soil Quality Monitoring: Results from the RMQS BioDiv Programme

A French programme, “Reseau de mesure de la qualite des sols: biodiversite des organismes” (RMQS BioDiv) was developed in Brittany (27,000 km2 in the western part of France) as an initial assessment of soil biodiversity on a regional scale in relation to land use and pedoclimatic parameters. The nematode community assemblages were compared among the land use categories. Crops were characterised by a high abundance of bacterial-feeders, particularly opportunistic bacterial-feeders belonging to Rhabditidae. Meadows presented a higher total abundance of nematodes than did crops (20.6 ind·g-1 dry soil vs. 13.1 ind·g-1 dry soil), and they were mainly linked to the great abundance of plant-parasitic nematodes, particularly Meloidogyne, but with a very high heterogeneity between sampled plots. The nematodes were most abundant in forests (23.7 ind·g-1 dry soil) and presented the most structured community (SI = 82.2 in forests vs. 58.6 and 55.5 in crops and meadows, respectively). Forests had also the higher fungal component (fungal-feeders and facultative plant-feeders belonging to the Tylenchidae) leading to a significant higher part of the fungal decomposition pathway in forests than in crops. The ability of different taxonomic levels of nematode identifica- tion to discriminate among different cropping systems (i.e., continuous cropping system, crop with meadow in the rota- tion, meadow with crop in the rotation and permanent meadow) was also tested. The family level (48 families identified in these samples) was more efficient than the other taxonomic levels (86 taxa, 17 functional guilds and 6 trophic groups): best statistical significant discrimination for time spent in identification. The relation between the nematode ecological indices, the abundance of nematode trophic groups and the crop management practices were studied. The effects of fertilization, ploughing frequency, use of pesticides and management systems on ecological indices, particu- larly on the Maturity Indices, were observed.

Soil Nematode Response to Biochar Addition in a Chinese Wheat Field

While studies have focused on the use of biochar as soil amendment, little attention has been paid to its effect on soil fauna. The biochar was produced from slow pyrolysis of wheat straw in the present study. Four treatments, no addition (CK) and three rates of biochar addition at 2 400 (B1), 12 000 (B5) and 48 000 kg ha−1 (B20), were investigated to assess the effect of biochar addition to soil on nematode abundance and diversity in a microcosm trial in China. The B5 and B20 application significantly increased the total organic carbon and the C/N ratio. No significant difference in total nematode abundance was found among the treatments. The biochar addition to the soil significantly increased the abundance of fungivores, and decreased that of plant parasites. The diversity of soil nematodes was significantly increased by B1 compared to CK. Nematode trophic groups were more effectively indicative to biochar addition than total abundance.

Short-term effects of forest disturbances on soil nematode communities in European mountain spruce forests

The nematode communities in spruce forests were compared with the short-term effects of forest damage, caused by windstorm, wildfire and management practices of forest soils. Soil samples were collected in June and October from 2006 to 2008 in four different sites: (1) forest unaffected by the wind (REF); (2) storm-felled forest with salvaged timber (EXT); (3) modified forest affected by timber salvage (wood removal) and forest fire (FIR); and (4) storm-felled forest where timber had been left unsalvaged (NEX). Nematode analysis showed that the dominant species in all four investigated sites were Acrobeloides nanus and Eudorylaimus silvaticus. An increase of A. nanus (35% of the total nematode abundance) in the first year in the FIR site led to the highest total abundance of nematodes compared with other sites, where nematode abundance reached the same level in the third year. In the FIR site bacterial feeders appeared to be the most representative trophic group, although in the second and third year, after disturbance, the abundance of this trophic group gradually decreased. In the NEX site, the number of nematode species, population densities and Maturity Index were similar to that recorded for the FIR site. In EXT and NEX sites, the other dominant species was the plant parasitic nematode Paratylenchus microdorus. Analyses of nematodes extracted from different forest soil samples showed that the highest number of species and diversity index for species (H'spp) were in the REF site. Differences between the nematode fauna in REF and other localities were clearly depicted by cluster analysis. The greatest Structure Index and Enrichment Index values were also in REF. In the EXT site, the number of nematode species, their abundance, H'spp and Maturity Index were not significantly different from those recorded in the reference site.

Nitrogen Addition Regulates Soil Nematode Community Composition through Ammonium Suppression

Nitrogen (N) enrichment resulting from anthropogenic activities has greatly changed the composition and functioning of soil communities. Nematodes are one of the most abundant and diverse groups of soil organisms, and they occupy key trophic positions in the soil detritus food web. Nematodes have therefore been proposed as useful indicators for shifts in soil ecosystem functioning under N enrichment. Here, we monitored temporal dynamics of the soil nematode community using a multi-level N addition experiment in an Inner Mongolia grassland. Measurements were made three years after the start of the experiment. We used structural equation modeling (SEM) to explore the mechanisms regulating nematode responses to N enrichment. Across the N enrichment gradient, significant reductions in total nematode abundance, diversity (H' and taxonomic richness), maturity index (MI), and the abundance of root herbivores, fungivores and omnivores-predators were found in August. Root herbivores recovered in September, contributing to the temporal variation of total nematode abundance across the N gradient. Bacterivores showed a hump-shaped relationship with N addition rate, both in August and September. Ammonium concentration was negatively correlated with the abundance of total and herbivorous nematodes in August, but not in September. Ammonium suppression explained 61% of the variation in nematode richness and 43% of the variation in nematode trophic group composition. Ammonium toxicity may occur when herbivorous nematodes feed on root fluid, providing a possible explanation for the negative relationship between herbivorous nematodes and ammonium concentration in August. We found a significantly positive relationship between fungivores and fungal phospholipid fatty acids (PLFA), suggesting bottom-up control of fungivores. No such relationship was found between bacterivorous nematodes and bacterial PLFA. Our findings contribute to the understanding of effects of N enrichment in semiarid grassland on soil nematode trophic groups, and the cascading effects in the detrital soil food web.

Crop resistance traits modify the effects of an aboveground herbivore, brown planthopper, on soil microbial biomass and nematode community via changes to plant performance

Plant-mediated effects of aboveground herbivory on the belowground ecosystem are well documented, but less attention has been paid to agro-ecosystems and in particular how crop cultivars with different traits (i.e. resistance to pests) shape such interactions. A fully factorial experiment was conducted using four rice cultivars with different insect-resistance, with and without the aboveground herbivore Nilaparvata lugens (brown planthopper), and to test two hypotheses (1) aboveground herbivory affects the soil microbial biomass and nematode community by altering plant performance and soil resource availability and (2) herbivory effects will depend on cultivar resistance traits. Our results suggested that cultivar resistance mediated both herbivory intensity and herbivore effects on plant performance. N. lugens decreased the availability of soil resources (soluble sugars, amino acids, organic acids, dissolved organic carbon and nitrogen), microbial biomass and percentages of bacterivores when feeding on a susceptible cultivar but increased them in a resistant cultivar. However, total nematode abundance and the percentage of plant-parasitic nematodes responded in the opposite way, increasing under a susceptible cultivar and decreasing under a resistant cultivar. The development of plant-parasites under resistant cultivars before aboveground herbivory might contribute to their resistance traits. Our findings provide evidence that N. lugens significantly reversed the pattern of soil resource availability, microbial biomass and nematode community structure (abundance and trophic composition) across cultivars with distinct resistance. In the presence of aboveground pests, the agronomic use of resistant rice cultivars could also control populations of plant-parasites and promote soil resource availability, further extended to higher trophic level of soil food web.

Impacts of permethrin contamination on nematode density and diversity: A microcosm study on benthic meiofauna from a Mediterranean coastal lagoon

A microcosm experiment was used to examine the response of nematode in terms of density and diversity at different levels of permethrin contamination. The sediments were contaminated with three permethrin concentrations [P1: low (5 mg kg−1), P2: medium (25 mg kg−1) and P3: high (250 mg kg−1)] and the effects were evaluated after 30 days. The results from univariate and multivariate analyses showed significant differences between nematode assemblages from uncontaminated control and those from permethrin treatments. All univariate indices changed significantly at all the levels of permethrin contamination. In fact, the total nematode abundance (I), Shannon-Weaner index (H′), species richness (d), evenness (J′) and number of species (S) decreased significantly in all the contaminated microcosms. In addition, the results from multivariate analyses of the species abundance data demonstrated that permethrin affects the responses of nematode species. These significant modifications in nematode community structures with response to permethrin contamination were the consequences of a different specific tolerance to this pesticide. Thus, Araeolaimus bioculatus, Calomicrolaimus honestus, Oncholaimus campylocercoides and Theristus pertenuis characterized by increased abundances in all treated replicates, appeared to be “permethrin-resistant” species. Daptonema trabeculosum was eliminated in all the doses tested and seemed to be a very sensitive species to permethrin contamination.

Resource, biological community and soil functional stability dynamics at the soil–litter interface

The interface between decaying plant residues and soil is a focus for soil ecological processes because of resources from the residues diffusing into the soil, and microfauna that proliferate in the adjacent soil. Given that the recovery of soil function following disturbance depends on immigration, colonization and establishment of exotic organisms from adjacent un-disturbed habitats, and the availability of bio-available resources, we hypothesized that the soil–litter interface could contribute to soil functional stability. In laboratory pot trials, soil was separated into two parts by a mesh bag with the inner section amended, or not amended, with rice straw; an outer layer of unamended soil, adjacent to the litter (1.5 cm thick, either heated or not), provided a soil–litter interface. This enabled us to examine the dynamics of dissolved organic carbon (DOC), mineral nitrogen, microbial biomass carbon (MBC), nematode assemblages and functional stability during 35 days incubation. Either 1 mm or 5 μm meshes were used, which allowed nematodes to migrate (SR1) or not (SR5) through the mesh to the soil–litter interface; thus also enabling us to evaluate the role of nematodes in soil functional stability. Higher DOC and MBC but lower mineral nitrogen concentrations were found at the soil–litter interface. Heating increased the availability of soil resources such as mineral nitrogen and DOC, but decreased the MBC and total nematode abundance in the soil. The soil–litter interface was characterized by a higher abundance of nematodes, particularly microbivores, regardless of mesh aperture or disturbance. The difference in nematode abundance between SR1 and SR5 indicated that nematode propagation, due to resource diffusion and nematode migration through the mesh, contributed to the changing numbers of microbivorous nematodes depending on incubation time. The soil functional stability was calculated as a relative change in the functioning of short-term barley decomposition. Soil functional resistance, defined as the instantaneous effect of disturbance on decomposition measured on the first day, was highest in the SR5 treatment. However, soil functional resilience, defined as the recovery of soil function over the whole incubation period (35d), was highest in the SR1 treatment, which is most probably attributed to the functioning of microbivorous nematodes. Our results suggest that small-scale spatial heterogeneity, due to organic residue decomposition, can help maintain soil functions following disturbance.

English

Effects of banana wilt disease caused by Fusarium oxysporum f. sp. cubense(FOC) on soil nematode community composition were investigated in Hainan province China. The results show that 31 nematode genera in the disease and control regions were identified. The disease area was mainly dominated byAcrobeles, Acrobeloides, Chiloplacus and Aphelenchus, while Pelodera,Protorhabditis, Ditylenchus and Basiria dominated in the control area.Paratylenchus was the dominant genus in both areas. The abundance of total nematodes, bacterivore (10 to 30 cm), plant parasites and omnivores-predators, the values of diversity (H′), maturity index (MI), plant parasite index (PPI), structure index (SI), enrichment index (EI), soil pH, the contents of total organic carbon(TOC), total nitrogen (TN), total phosphorus (TP) and alkaline nitrogen (AN) in the disease area were significantly lower (P < 0.01) than in the control. However, those of fungivores (10 to 20 cm) and dominance (λ) exhibited quite a reverse result. In the disease area, the abundance of total nematodes and bacterivore decreased (P< 0.01) and plant parasites increased (P<0.01) with the increase of soil depth. Thevalues of SI increased (P <0.01) with the increase of soil depth in the disease and control areas in 0 to 20 cm. The results indicate that FOC changed soil nematode community characteristics and decreased diversity of soil nematode community.   Key words: Banana wilt disease, Fusarium oxysporum f. sp. cubense (FOC), soil nematode community, diversity. &nbsp

Bioindication potential of using molecular characterisation of the nematode community: Response to soil tillage

The utility of a high-throughput molecular characterisation (directed - terminal restriction fragment length polymorphism – dTRFLP) of soil nematode community structure was evaluated in a field trial of the effects of tillage intensity. Replicated plots were established in a field previously used for continuous, conventional tillage of spring barley (Hordeum vulgare) and cultivated by: zero tillage; minimum tillage; conventional tillage; deep tillage and conventional tillage with compaction. Nematodes were sampled in spring, summer and autumn for three years after treatment began. Total nematode abundance and Nematode Channel Ratio indicated changes due to the zero and minimum tillage, more nematodes and a greater proportion of fungal feeders, but effects were secondary to those of year and season. The effects of tillage were far easier to interpret when other bioindicators were also taken into account. Increases in soil carbon and fungal biomass in the upper layers of the zero and minimum tillage treatments, observed in parallel studies, corroborated the nematode data. The high-throughput molecular method proved to be well suited for multiple measurements of nematode community structure, although limitations in the resolution of nematode taxa could obscure changes in generic and species composition.

Carbofuran effects in soil nematode communities: Using trait and taxonomic based approaches

This work intends to implement the use of native soil nematode communities in ecotoxicological tests using a model pesticide and two geographically nematode communities (Mediterranean and sub-tropical) in order to obtain new perspectives on the evaluation of the toxic potential of chemical substances. The environmental condition of the nematode communities was described using a trait-based approach (grouping the organisms according to their feeding traits) and a traditional taxonomic method (identification to family level). Effects on total nematode abundance, number of families and abundance of nematode feeding groups as well as potential shifts in both trophic and family structure were assessed. Agricultural soils from Curitiba (Brazil) and Coimbra (Portugal) were sampled and the corresponding nematode communities were extracted. Part of the collected soil was defaunated and spiked with four doses of a carbofuran commercial formulation. Afterwards each of the replicates was inoculated with a nematode suspension containing ≈200 or 300 nematodes. After 14 and 28 d of exposure the nematodes were extracted, counted and identified at family level and separately classified according to their feeding traits. The patterns of nematode responses revealed a decrease in the total abundance and a reduction in the number of families. Despite the similar effects observed for both communities, statistically significant toxic effects were only found within the Portuguese community. The total nematode abundance was significantly reduced at the highest carbofuran concentrations and significant shifts in the family structure were detected. However, the trophic structure, i.e., the contribution of each feeding group for the overall community structure, did not significantly change along the contamination gradient. Results showed that using such a trait-based approach may increase the ecological relevance of toxicity data, by establishing communalities in the response to a chemical from two different taxonomic communities, although with potential loss of information on biodiversity of the communities.

Effects of tillage and residue management on soil nematode communities in North China

Soil nematode abundance, community composition and biomass were determined in the Fengqiu State Key Agro-Ecological Experimental Station, North China, in order to evaluate the effects of tillage system (conventional tillage and no-tillage) and residue management (0, 50% and 100% wheat residue incorporation/coverage) on the nematode communities. Two kinds of indicators (descriptive and evaluative) were categorized. Of the descriptive indicators, residue management had a significant effect on the total nematode abundance, biomass and trophic groups except for bacterivores. Of the evaluative indicators, Shannon diversity (H′), generic richness (GR), nematode channel ratio (NCR) and enrichment index (EI) significantly increased with increasing residue quantity, whereas dominance ( λ), basal index (BI) and channel index (CI) exhibited an opposite trend. Significant tillage effects were observed on the trophic diversity (TD), EI, CI and carbon production ( P). The responses of nematodes to tillage and residue were genus-dependent. Canonical correspondence analysis indicated that tillage explained 4.9% and 15.4%, and residue management explained 5.2% and 13.1% of the variations in soil nematode abundance and biomass, respectively. Different metabolic footprint characteristics of the food web were demonstrated graphically by enrichment and structure footprints. The evaluative indicators, such as EI and CI, were sensitive to both tillage and residue management. The descriptive indicators could be used to obtain an intuitive answer to the effect of residue management and the evaluative indicators were more comprehensive for interpreting the structure and function of the soil food web under different tillage and residue management regimes.

Near infrared reflectance spectroscopy (NIRS) could be used for characterization of soil nematode community

Studying soil nematofauna provides useful information on soil status and functioning but requires high taxonomic expertise. Near infrared reflectance (NIR) spectroscopy (NIRS) has been reported to allow fast and inexpensive determination of numerous soil attributes. Thus the present study aimed at assessing the potential of NIRS for determining the abundance and diversity of soil nematodes in a set of 103 clayey topsoil samples collected in 2005 and 2006 from agricultural soils in the highlands of Madagascar. The morphological characterization of soil nematofauna involved extraction through elutriation then counting under binoculars and identification at family or genus level using microscopy, on ca. 150-g fresh soil samples. Taxa were assigned to five trophic groups, namely bacterial feeders, fungal feeders, obligate plant feeders, facultative plant feeders, and omnivores and predators (together). In addition, four ecological indexes were calculated: the Enrichment index, Structure index, Maturity index, and Plant parasitic index. Oven-dried (40 °C) < 2-mm sieved 5-g soil subsamples were scanned in the NIR range (1100–2500 nm), then spectra were fitted to nematofauna data using partial least square regression. Depending on the sample set considered (year 2005, year 2006, or both years), NIRS prediction of total nematode abundance was accurate (ratio of standard deviation to standard error of cross validation, i.e. RPD ≥ 2) or acceptable (RPD ≥ 1.6). Predictions were accurate, acceptable, or quasi-acceptable (RPD ≥ 1.4) for several of the six most abundant taxa, and to a larger extent, for most trophic groups (except facultative plant feeders); but they could not be made for taxa present in a small number of samples or at low abundance. By contrast, NIRS prediction of relative abundances (in proportion of total abundance) was poor in general, as was also the prediction of ecological indexes (except for the 2006 set). On the whole, these results were less accurate than NIRS predictions of soil attributes often reported in the literature. However, though not very accurate, NIRS predictions were worthwhile considering the labor-intensity of the morphological characterization. Most of all, NIRS analyses were carried out on subsamples that were probably too small (5 g) to allow representative sampling of nematofauna. Using larger samples for NIRS (e.g. 100 g) would likely result in more accurate predictions, and is therefore recommended. Scanning un-dried samples could also help improve prediction accuracy, as morphological characterization was carried out on samples not dried after sampling. Examining wavelengths that contributed most to NIRS predictions, and chemical groups they have been assigned to, suggested that NIRS predictions regarding nematofauna depended on constituents of both nematodes and preys’ food. Predictions were thus based on both nematofauna and soil organic properties reflected by nematofauna.

Response of meiofaunal community with special reference to nematodes upon deployment of artificial reefs and cessation of bottom trawling in subtropical waters, Hong Kong

The response of meiofaunal communities, especially nematodes, upon the deployment of artificial reefs and cessation of bottom trawling at a designated Marine Protected Area (MPA) in Hong Kong was studied through comparison of meiofaunal samples collected inside and outside the MPA. Total organic carbon (TOC), total Kjeldahl nitrogen (TKN), total phosphorus (TP), water content and silt–clay fraction in sediments were also analyzed. The level of TOC and TKN, and total meiofaunal and nematode abundance were significantly lower inside than that outside the MPA. Multivariate analysis also indicated differences in community structure. Biological traits analysis revealed that the proportions of nematodes with a clavate tail shape, longer adult length, stout body shape and k-strategy life history were higher inside than that outside the MPA. Such changes in nematode community structure could be a result of the presence of the artificial reefs and closure of the MPA from bottom trawling.

Early-stage impacts of sika deer on structure and function of the soil microbial food webs in a temperate forest: A large-scale experiment

Modification of forest vegetation caused by an overabundance of mammalian herbivores has been reported in temperate and subarctic regions all over the world. However, the indirect effects of these herbivores on the structure and functions of soil decomposer systems are not fully understood, especially in temperate forests. We investigated the early effects of sika deer invasion on soil decomposer systems in a Japanese temperate forest using two large-scale experimental enclosures with low and high densities of deer (LD: 25ha, 4deerkm−2; HD: 6.25ha, 16deerkm−2) including control plots without deer (WD). Three years after deer introduction the understory cover of dwarf bamboo (Sasa nipponica) declined due to deer browsing in both enclosures. At the same time, measurements were made of the soil microbial community, soil nematode community, soil nitrogen (N) mineralization rate, and carbon (C) and N content in dwarf bamboo leaves. In LD, soil microbial biomass was lower from WD, probably due to the decrease of fresh aboveground litter from dwarf bamboo. Surprisingly, there were no cascading effects on total abundance of soil nematodes and soil total N mineralization potential which were unaffected by deer in the LD treatment, while soil NH4+-N content was lower and soil nematode community structure was different (abundance of 4 families was higher and that of 3 families was lower, but the functional structure was not different) from WD. Specifically, the responses to deer introduction varied between microbes and nematodes, and the change of balance in the microbial food webs may have altered N mineralization processes. In contrast, in the HD treatment, all the variables measured were not significantly different from those of WD treatment. Intensive browsing by deer may have cancelled out the effects of the decrease in aboveground litter input on the soil decomposer systems through other pathways, such as a transitory increase in belowground litter input caused by induced changes in allocation patterns of bamboo. No changes in total N mineralization potential, leaf N, and composition of understory vegetation in both enclosures indicated that deer introduction did not facilitate nor retard N cycling regardless of deer density. This study showed that sika deer browsing can affect soil decomposer systems at an early stage of invasion even at low density, which contrasts with previous studies on the subject. Linking our findings of early-stage effects of deer on soil decomposer systems to longer-term dynamics of understory vegetation and tree regeneration will be needed to evaluate the adequacy of deer management practices with respect to the sustainability of soil nutrient supplies.