6-31G Basis Set Research Articles

(Digital Presentation) Temperature-Induced Conversion of 2D Vanadium-Doped MoSe2 Nanosheets to 1D V2MoO8 Rods: Enhanced Performance in Electrochemical Antibiotic Detection in Biological and Environmental Samples

A new strategies were developed to prepare 1D-V2MoO8 (VMO) rods from 2D V-doped MoSe2 nanosheets (VMoSe2) with good control over morphology and crystallinity by a facile hydrothermal and calcination process. The morphological changes from 2D to 1D rods were controlled by changing the calcination temperature from 300 to 600 °C. The elimination of Se and the incorporation of O into the V-Mo structure were evaluated by TGA, p-XRD, Raman, FE-SEM, EDAX, FE-TEM, and XPS analyses. These results prove that the optimization of the physical parameters leads to changes in the crystal phase and textural properties of the prepared material. The VMoSe2 and its calcined products were investigated as electrochemical sensors for the detection of the antibacterial drug nitrofurantoin (NFT). At a calcination temperature of 500 oC, the modified SPCE proved to be an excellent electrochemical sensor for the detection of NFT in neutral media. Under the optimized conditions, VMO-500 oC/SPCE exhibits low LOD (0.015 µM), wide linear ranges (0.1-31, 47-1802 µM), good sensitivity, and selectivity. The proposed sensor was successfully used for the analysis of NFT in real samples with good recovery results. Moreover, the reduction potential of NFT agreed well with the theoretical analysis using quantum chemical calculations, with the B3LYP with 6-31G(d,p) basis set predicting an E 0 value of -0.45 V. The interaction between the electrode surface and NFT via the LUMO diagram and the electrostatic potential surface is also discussed.

The influence of basis sets and ansatze building to quantum computing in chemistry.

Quantum computing is an exciting area, which has grown at an astonishing rate in the last decade. It is especially promising for the computational and theoretical chemistry area. One algorithm has received a lot of attention lately, the variational quantum eigensolver (VQE). It is used to solve electronic structure problems and it is suitable to the noisy intermediate-scale quantum (NISQ) hardware. VQE calculations require ansatze and one of the most known is the unitary coupled cluster (UCC). It uses the chosen basis set to generate a quantum computing circuit which will be iteratively minimized. The present work investigates the circuit depth and the number of gates as a function of basis sets and molecular size. It has been shown that for the current quantum devices, only the smallest molecules and basis sets are tractable. The H molecule with the cc-pVTZ and aug-cc-pVTZ basis sets have circuit depths in the order of 10 to 10 gates and the C H molecule with 3-21G basis set has a circuit depth of gates. At the same time the analysis demonstrates that the H molecule with STO-3G basis set, requires at least 500 shots to reduce the error and that, although error mitigation schemes can diminish the error, they were not able to completely negate it. The quantum computing and electronic structure calculations were performed using the Qiskit package from IBM and the PySCF package, respectively. The ansatze were generated using the UCCSD method as implemented in Qiskit, using the basis sets STO-3G, 3-21G, 6-311G(d,p), def2-TZVP, cc-pVDZ, aug-cc-pVDZ, cc-pVTZ, and aug-cc-pVTZ. The operators and the Hamiltonian were mapped using the Jordan-Wigner scheme. The classical optimizer chosen was the simultaneous perturbation stochastic approximation (SPSA). The quantum computers used were the Nairobi and Osaka, with 7 and 127 qubits respectively.

Quantum Chemical Computational Studies on the Structural Aspects, Spectroscopic Properties, Hirshfeld Surfaces, Donor-Acceptor Interactions and Molecular Docking of Clascosterone: A Promising Antitumor Agent

In the present investigation, computations based on density functional theory (DFT) were employed to scrutinize the molecular configurations of clascosterone. Optimization was achieved using the DFT/B3LYP method with the 6-31G (d,p) basis set to thoroughly explore its structural and spectroscopic features. Additionally, molecular electrostatic potential (MEP) and Mulliken population analyses were conducted to comprehend the bonding characteristics and reactive sites. The Hirshfeld surface highlighted predominant H•••H interactions (71.5%), followed by O•••H interactions (25.5%). The stability of the compound was confirmed through the determination of hyperconjugative interactions using Natural Bond Orbital (NBO) analysis. Furthermore, molecular docking assessed the potential biological significance of clascosterone as an antitumor agent, targeting SMAD proteins like SMAD3 and SMAD4, resulting in binding energies of -8.22 and -8.57 kcal/mol, respectively.

Quamtum Mechanical Study on Structural and Electronic Properties of Tert-Butyl Based Bridged Dithiophene Oxide Derivatives

Computational modeling is vital to designing and creating organic semiconductors used in solar cells, organic field-effect transistors, and other areas. This work studied the structural and electronic features of a group of substituted tert-butyl bridged dithiophene oxide derivatives using Density Functional Theory (DFT) calculations. Geometry improvements were carried out using the B3LYP hybrid functional and the 6-31G(d,p) basis set in Gaussian 09. Molecular shapes, bond lengths, bond angles, and dihedral angles were studied to find out how substitution patterns change the packing and conformation of molecules. Energy levels, distribution, and makeup of frontier molecular orbitals were found. This calculation also included finding other electronic qualities, such as electronic charges, dipole moments, and polarizabilities. Findings show that tert-butyl substitution makes the molecular backbone stiffer and limits its ability to twist compared to similar molecules that have not been replaced. The chemical geometry stays mostly the same when electron-withdrawing or electron-donating substituents are added to the tert- butyl groups. Nevertheless, the strength and location of substituents have a significant impact on frontier orbital energies. The HOMO-LUMO gap grew significantly when the nitro or cyano groups firmly pulled electrons away from derivatives. For successful charge transport, electron density plots show that the HOMO and LUMO are mainly located on the thiophene and substituent moieties, respectively. Molecular dipole moments are also strongly affected by the electronic features of substituents. This research shows how to change the optoelectronic properties of tert-butyl-based dithiophene oxide derivatives and how their structure-property relationships can be improved. The results help makes new organic semiconductors that work better in various electronic and optoelectronic uses.

Enhancing the performance of pyridyl carboxamide-N,N-dimethyl amino chalcone (PCC) as a dye sensitizer for dye-sensitized solar cells (DSSCs) through the incorporation of electron donor moieties

This study has focused on enhancing the performance of pyridyl carboxamide-N,N-dimethyl amino chalcone (PCC) as a sensitizer for dye-sensitized solar cells (DSSCs) by strategically incorporating electron donor moieties identified in a literature review. Our reviewing the previous reports highlights the pivotal role of electron donors in optimizing light harvesting, electron injection, and overall power conversion efficiency in organic dye sensitizers, particularly those following a donor-bridge-acceptor (D-π-A) architecture. The selected donor moieties, including dithieno[3,2-b:2′,3′-d]thiophene (DTT), benzodithiophene (BDT), triphenylamine (TPA), carbazole (CBZ), and triazatruxene (TAZ), are systematically introduced into the molecular structure of PCC (abbreviated as PCC-DTT, PCC-BDT, PCC-TPA, PCC-CBZ, and PCC-TAZ, respectively). The performance of these modified compounds is rigorously evaluated using density functional theory (DFT) methods. Validation results revealed that the most reliable method for PCC derivative characterization involved the combination of the functional B3PW91 with a 6-31G(d) basis set. The results indicate that the incorporation of certain donor moieties, particularly BDT, significantly enhances the electronic and optical properties of PCC, including lower HOMO energy levels, a narrow energy gap (Egap), enhanced absorption intensity, and a redshift in absorption peaks. Evaluation of photovoltaic properties including electron injection (ΔGinj), and open circuit voltage (Voc), indicated facilitating spontaneous electron injection from the dyes to the TiO2 conduction band. Notably, PCC-TAZ demonstrated the lowest electron regeneration (ΔGreg), suggesting a notable potential for efficient electron regeneration.

Computer-aided drug design supporting sunscreen research: a showcase study using previously synthesized hybrid UV filter-antioxidant compounds.

Although quantum mechanical calculations have proven effective in accurately predicting UV absorption and assessing the antioxidant potential of compounds, the utilization of computer-aided drug design (CADD) to support sustainable synthesis research of new sunscreen active ingredients remains an area with limited exploration. Furthermore, there are ongoing concerns about the safety and effectiveness of existing sunscreens. Therefore, it remains crucial to investigate photoprotection mechanisms and develop enhanced strategies for mitigating the harmful effects of UVR exposure, improving both the safety and efficacy of sunscreen products. A previous study conducted synthesis research on eight novel hybrid compounds (I-VIII) for use in sunscreen products by molecular hybridization of trans-resveratrol (RESV), avobenzone (AVO), and octinoxate (OMC). Herein, time-dependent density functional theory (TD-DFT) calculations performed in the gas phase on the isolated hybrid compounds (I-VIII) proved to reproduce the experimental UV absorption. Resveratrol-avobenzone structure-based hybrids (I-IV) present absorption maxima in the UVB range with slight differences between them, while resveratrol-OMC structure-based hybrids (V-VIII) showed main absorption in the UVA range. Among RESV-OMC hybrids, compounds V and VI exhibited higher UV absorption intensity, and compound VIII stood out for its broad-spectrum coverage in our simulations. Furthermore, both in silico and in vitro analyses revealed that compounds VII and VIII exhibited the highest antioxidant activity, with compound I emerging as the most reactive antioxidant within RESV-AVO hybrids. The study suggests a preference for the hydrogen atom transfer (HAT) mechanism over single-electron transfer followed by proton transfer (SET-PT) in the gas phase. With a strong focus on sustainability, this approach reduces costs and minimizes effluent production in synthesis research, promoting the eco-friendly development of new sunscreen active ingredients. The SPARTAN'20 program was utilized for the geometry optimization and energy calculations of all compounds. Conformer distribution analysis was performed using the Merck molecular force field 94 (MMFF94), and geometry optimization was carried out using the parametric method 6 (PM6) followed by density functional theory (DFT/B3LYP/6-31G(d)). The antioxidant behavior of the hybrid compounds (I-VIII) was determined using the highest occupied molecular orbital (εHOMO) and the lowest unoccupied molecular orbital (εLUMO) energies, as well as the bond dissociation enthalpy (BDE), ionization potential (IP), and proton dissociation enthalpy (PDE) values, all calculated at the same level of structural optimization. TD-DFT study is carried out to calculate the excitation energy using the B3LYP functional with the 6-31G(d) basis set. The calculated transitions were convoluted with a Gaussian profile using the Gabedit program.

Experimental and Theoretical Studies on Indigo-Dye-Modified Conjugated Polymers.

The present work reports the synthesis of indigo-dye-incorporated polyaniline (Indigo-PANI), poly(1-naphthylamine) (Indigo-PNA), poly(o-phenylenediamine) (Indigo-POPD), polypyrrole (Indigo-PPy), and polythiophene (Indigo-PTh) via an ultrasound-assisted method. The synthesized oligomers were characterized using FTIR, UV-visible spectroscopy, X-ray diffraction (XRD), scanning electron microscopy (SEM), fluorescence studies, and thermogravimetric analysis (TGA). The experimental data were theoretically compared to analyze the vibrational and electronic spectra via time-dependent density-functional theory (TD-DFT) by applying the Becke, three-parameter, and Lee-Yang-Parr (B3LYP) method with a 6-311G (d,p) basis set. The experimental, theoretical vibrational, and electronic spectra were found to be in close agreement and confirmed the successful incorporation of indigo dye in PANI, PNA, POPD, PPy, and PTh. These studies confirmed that multifunctional oligomers could be synthesized through a facile technique by incorporating dye moieties to enhance their optoelectronic properties, allowing them to be utilized as near-infrared-emitting probes for photodynamic therapy.

Comparative Linkage of Novel Anti-Tumor Pd(II) Complex with Bio-Macromulecules: Fluorescence, UV-Vis, DFT, Molecular Docking and Molecular Dynamics Simulation Studies.

A novel mononuclear palladium complex, [Pd(dach)(SSA)], where dach and SSA are diaminocyclohexane and sulfosalicylic acid ligands, respectively, has been synthesized and identified utilizing analytical and spectral methods. DFT calculations, namely geometry optimization, MEP, HOMO-LUMO and NBO analysis, have been conducted at B3LYP level by aug-ccpVTZ-PP and 6-311G(d, p) basis sets. NBO and HOMO-LUMO analysis exhibited that the palladium compound is stable. MEP showed the potential sites of molecule for the interaction. By employing MTT assay, the cytotoxicity activity of the aforesaid compound was examined on K562 cell line, which revealed a proper activity compared to cisplatin. To ascertain the lipophilicity of the newly made compound, the partition coefficient measurement was accomplished, which follows the order of cisplatin < Pd(II) complex. Next, investigation of binding properties of the studied compound with DNA of calf thymus and BSA were done by spectroscopic (CD, fluorescence emission and electronic adsorption) and non-spectroscopic (viscosity measurements, DNA gel electrophoresis, molecular docking and molecular dynamics simulation) methods. The outcomes of CD and UV-Vis spectroscopy demonstrated that the title compound refolded the protein via increasing the alpha helix percentage. The data obtained from UV-Vis studies indicated the non-intercalative mutual action between Pd(II) complex with DNA. It also revealed that the Kapp magnitude of CT-DNA (7.43 × 104 M- 1) is higher than the BSA (5.17 × 103 M- 1), and L1/2 (midpoint of transition) of CT-DNA (5 µM) is lower than the BSA (5.7 µM), indicating that the complex has a greater binding affinity to CT-DNA than BSA. Fluorescence quenching mechanism of the two biomolecules by the metal complex is static and the calculated thermodynamic parameters (ΔS° < 0 and ΔH° < 0) suggested the hydrogen bonding and/ or van der Waals forces with DNA and BSA. Further, molecular docking indicated that the studied compound fits into the groove of DNA and the site I of BSA. The stability of metal compound-DNA/-BSA in the presence of H2O solvent and over the time were validated via molecular dynamics simulation.

Exploration of the synergistic effect of chrysene-based core and benzothiophene acceptors on photovoltaic properties of organic solar cells

To improve the efficacy of organic solar cells (OSCs), novel small acceptor molecules (CTD1–CTD7) were designed by modification at the terminal acceptors of reference compound CTR. The optoelectronic properties of the investigated compounds (CTD1–CTD7) were accomplished by employing density functional theory (DFT) in combination with time-dependent density functional theory (TD-DFT). The M06 functional along with a 6-311G(d,p) basis set was utilized for calculating various parameters such as: frontier molecular orbitals (FMO), absorption maxima (λmax), binding energy (Eb), transition density matrix (TDM), density of states (DOS), and open circuit voltage (Voc) of entitled chromophores. A red shift in the absorption spectra of all designed chromophores (CTD1–CTD7) was observed as compared to CTR, accompanied by low excitation energy. Particularly, CTD4 was characterized by the highest λmax value of 685.791 nm and the lowest transition energy value of 1.801 eV which might be ascribed to the robust electron-withdrawing end-capped acceptor group. The observed reduced binding energy (Eb) was linked to an elevated rate of exciton dissociation and substantial charge transfer from central core in HOMO towards terminal acceptors in LUMO. These results were further supported by the outcomes from TDM and DOS analyses. Among all entitled chromophores, CTD4 exhibited bathochromic shift (685.791 nm), minimum HOMO/LUMO band gap of 2.347 eV with greater CT. Thus, it can be concluded that by employing molecular engineering with efficient acceptor moieties, the efficiency of photovoltaic materials could be improved.

Red-emitting 4-methyl coumarin fused barbituric acid as an electrochemical sensor for catechol detection and probe for latent fingerprints.

Herein, we have reported a red-emitting 4-methyl coumarin fused barbituric acid azo dye (4-MCBA) synthesized byconventional method. Density functional theory (DFT) studies of tautomer compounds were done using (B3LYP) with a basis set of 6-31G(d,p). NLO analysis has shown that tautomer has mean first-order hyperpolarisabilities (β) value of 1.8188 × 10-30 esu and 1.0470 × 10-30esu for azo and hydrazone forms, respectively, which is approximately nine and five times greater than the magnitude of urea. 4-MCBA exhibited two absorption peaks in the range of 290-317 and 379-394 nm, and emission spectra were observed at 536 nm. CV study demonstrated that the modified 4-MCBA/MGC electrode exhibited excellent electrochemical sensitivity towards the detection of catechol and the detection limit is 9.39 μM under optimum conditions. The 4-MCBA employed as a fluorescent probe for the visualisation of LFPs on various surfaces exhibited Level-I to level-II LFPs, with low background interference.

Synthesis, DFT, and in silico biological evaluation of chalcone bearing pyrazoline ring against Helicobacter pylori receptors

Peptic ulcer disease (PUD), often caused by Helicobacter pylori infection, is a prevalent gastrointestinal condition characterized by the erosion of the gastric or duodenal mucosal lining. H. pylori adheres to gastric epithelial cells, secreting toxins and disrupting the stomach's defenses. H. pylori relies on various receptors to establish infection, making these molecules attractive therapeutic targets. This study aimed to develop novel anti-ulcer compounds by combining benzothiazole, pyrazoline, and chalcone pharmacophores. A series of chalcone derivatives 4a-c were synthesized via Claisen-Schmidt condensation and characterized using spectroscopic techniques such as FT-IR, NMR and elemental analysis. The DFT calculations, using B3LYP method with 6-311G basis set, revealed the p-tolyl derivative 4b exhibited the highest thermal stability while the p-bromophenyl derivative 4c showed the lowest stability but highest chemical reactivity. The HOMO-LUMO energy gaps as well as the dipole moments decreased in the order: 4b > 4a >4c, reflecting a similar reactivity trend. Molecular docking showed ligands 4a-c bound effectively to the H. pylori urease enzyme, with docking scores from −5.3862 to −5.7367 kcal/mol with superior affinity over lansoprazole. Key interactions involved hydrogen bonds and hydrophobic pi-hydrogen bonds with distances ranging 3.46–4.34 Å with active site residues ASN666, SER714 and ASN810. The combined anti-inflammatory, antimicrobial, and H. pylori anti-adhesion properties make these novel chalcones promising PUD therapeutic candidates.

Exploring the electronic structure and interaction mechanism of nucleic acid bases on pristine graphene and beryllium-oxide-graphene layers

The interaction between nucleic acid bases and graphene, along with its derivatives, is crucial for various applications like biosensors, drug delivery, and bio-nanotechnology. The present study focuses on optimizing nucleic acid bases, and the graphene layer using the B3LYP/6-31G** method and the beryllium-oxide-graphene layer using the PBE/6-31G** method. The optimized coordinates are then used to investigate the interaction of nucleic acid bases with pristine graphene and beryllium-oxide-graphene in parallel stacking mode. Various functionals including hybrid B3LYP, PBEPBE, and range-separated ωB97XD along with 6-31G(d,p) basis sets, are employed for this analysis. Based on the obtained interaction energy values, it is concluded that the wB97XD/6-31G(d,p) method provides superior results for the interaction study. Additionally, it is noted that the interaction with pristine graphene primarily involves aromatic π-π interactions and hydrogen bonds, while beryllium oxide graphene seems to form coordination bonds with electron-rich sites. Also, the beryllium-oxide-graphene layer exhibited reduced rigidity compared to pristine carbon graphene layer.

Insights into the electronic structure and interaction energies of 4-ethoxy-N-(4-ethoxy-2-hydoxybenzylidene)benzohydrazide

The molecule 4-ethoxy-N-(4-ethoxy-2-hydroxybenzylidene)benzohydrazide (4EHB) is characterized by a rigid aroylhydrazone core, acting as a mesogenic unit, and a flexible chain at its terminal end. The aroylhydrazone core comprises two aromatic rings linked by connecting groups, resulting in moderate size and elongation of the molecule. Variations in the positions and orientations of elongated molecules give rise to different mesogenic phases such as Nematic, Smectic, and Hexatic Smectic. The mesogenic behavior of aroylhydrazone-based materials is governed by various non-covalent interactions. In this study, molecular geometry optimization, analysis of HOMO-LUMO orbitals, and MEP surfaces of individual and pairs of 4EHB molecules were conducted using the Density functional B3LYP technique with the basis set 6-31G**. Intermolecular interaction energies between pairs of 4EHB molecules are evaluated using the technique M06-2X/6-311G** in stacking, terminal, and side-to-side (in-plane) configurations. Basis set superposition error (BSSE) is corrected using counterpoise method and interaction energy(I.E.) is decomposed in different components using SAPT0 method at level 6-311G**, which provided insights into the mesogenic behavior of the system.

QTAIM analysis of the bonding in anionic group 6 carbonyl selenide clusters: [Se2M3(CO)10]2- (M=Cr, Mo, W).

This research aims to offer a deeper understanding of the bonding interactions between M-Se and M-CO and how these interactions change across the group 6 transition metal series: [Se2M3(CO)10]2- (M = Cr, Mo, W). It also seeks to explore the impact of carbonyl groups on M-M interactions within the clusters. Seven criteria, which are based on QTAIM properties, have been considered and compared with the corresponding criteria in other transition metal clusters. The results confirm that no such bond critical points or bond baths occur between transition metals, which instead have 5c-7e bonding interactions delocalized over their five-membered M3(μ-Se)2 ring, as evidenced by the non-negligible nonbonding delocalization indices. The topological properties of three bond clusters, Cr-Se, Mo-Se, and W-Se, resemble those of "intermediate closed shell characters," which combine covalent and electrostatic properties. Source function calculations indicated that the bonded Se atom contributed the most to each Cr-Se and Mo-Se bcp. The OCO atoms and nonbonded Se atoms also contributed to some extent. However, metal atoms act as sinks rather than as sources of electron density. In contrast, the majority of the metal atoms, both bonded and nonbonded, contribute to Cr-W bcps. Analysis of the delocalization indices δ(M…O) in the three clusters indicates that CO significantly contributes to Cr π-back donation in cluster 1. In contrast, no π-back donation occurs from CO to Mo or W in clusters 2 or 3, respectively. The B3P86 hybrid functional was used for computations in the Gaussian 09 software. The LanL2DZ basis set was employed for Cr, Mo, and W, while the 6-31G (d, p) basis set was used for C, O, and Se atoms. We performed QTAIM analysis using the AIM2000 and Multiwfn packages, incorporating B3P86/WTBS for Cr, Mo, and W atoms. The 6-311++G(3df,3pd) basis set was used for C, O, and Se atoms. Additionally, we utilized the ELF and SF.

Correlation of relaxation processes by BDS: Calorimetric, spectral findings and molecular dynamics of active side chain amino acids in hydrated medium

The dielectric dispersion behavior of amino acids (L-arginine and L-glutamic acid) was studied in the aqueous state by Broadband Dielectric Spectroscopy (BDS). The complex permittivity spectra of the solutions were recorded for the frequency regime 10 MHz – 50 GHz at a temperature range of 283 K to 303 K for various mole fractions. The interaction of polarized side chains of the solute (positive in L-arginine and negative in L-glutamic acid) with hydrated polar media is the significance of the work. The hydration effect of the amino acid modifies the dielectric and physicochemical properties of the solution. The study of Differential Scanning Calorimetry (DSC) analysis and thermal parameters specifies that the L-glutamic acid has super strong nature than L-arginine. The formation of hydrogen bond, nature and strength of the interaction through side chain are confirmed by spectral analysis (FT-Raman, FT-IR and NMR). The geometrical properties were computed with DFT/B3LYP −6-31G(d,p) basis set. The obtained spectral signals were compared with experimental data. The experimental and quantum mechanical calculations are used to identify the hydrodynamic coupling of the solution. The present study correlate the dielectric, thermal parameters, spectral inferences with molecular structure, dynamics is a novel approach which confirms the nature and strength of the complex formation.

Design amino acids Schiff base ligands and their Cu(II) and Zn(II) complexes as potent anticancer agent on human lung carcinoma, efficient CT-DNA binder, antibacterial and mesomorphic properties

A new mesogenic amino acid Schiff base ligands of the type Potassium (E)-4-((4-(hexadecyloxy)-2-hydroxybenzylidene)amino)butanoate (HL1) and Potassium (E)-6-((4-(hexadecyloxy)-2-hydroxybenzylidene)amino)hexanoate (HL2) and their copper(II) and zinc(II) complexes have been successfully synthesized and characterized by various elemental analyses, UV–visible, FT-IR, 1HNMR , 13CNMR , ESI-MS and thermogravimetric analysis (TGA). Both the ligands were found to exhibit mesophase with multiple textures as revealed from the polarizing optical microscope (POM) and differential scanning calorimetry (DSC). The metal complexes were found to exhibit efficient CT-DNA interaction and antibacterial activity against both Gram-positive (Staphylococcus aureus) and Gram-negative (Escherichia coli). The complexes were assessed for their in-vitro anticancer efficacy against A549 cell line and findings indicate notable cytotoxicity effect which is comparable to that of standard drug, cisplatin. The Density Functional Theory (DFT) study of the compounds was carried out by using LanL2DZ and 6–31 G (d, p) basis set with meta-hybrid Truhlar's functional M06–2X in order to obtain the optimized geometry.

Selecting electronic transitions between graphyne and lithium ions for entanglement generation using new organic material

This study explores the entanglement potential in a graphyne (GM) system embedded with lithium ions, employing time-dependent density functional theory (TD-DFT) calculations. A finite, non-periodic GM structure was optimized using the B3LYP functional and the 6-311G(d,p) basis set. Lithium ions were strategically positioned at various distances from the GM to investigate their interactions, focusing on charge transfer transitions to the unoccupied 2s orbitals of the lithium ions. Successful electronic transitions were identified and validated, emphasizing the role of contemporary atomic manipulation technologies such as optical tweezers. This research enhances the understanding of entanglement mechanisms in quantum systems and proposes potential applications in secure quantum communication and advanced quantum computing. The practical feasibility of precise atomic manipulation, enabled by cutting-edge technologies, underscores the applicability of the proposed configurations.

Peripheral (E)-2-[(4-hydroxybenzylidene)-3,4-dihydronaphthalen-1(2H)-one)]-coordinated phthalocyanines with improved enzyme inhibition properties and photophysicochemical behaviors.

In this study, (E)-4-{4-[(1-oxo-3,4-dihydronaphthalen-2(1H)-ylidene)methyl]phenoxy}phthalonitrile (4) and its phthalocyanine derivatives (5-8) were synthesized for the first time. Aggregation behaviors of the novel soluble phthalocyanines in organic solvents were investigated. In addition, the efficiency of 1O2 production of (5) and ZnPc (6) was investigated. The singlet oxygen quantum yields (ΦΔ) for 2HPc (5) and ZnPc (6) were found to be 0.58 and 0.83, respectively. Additionally, novel phthalocyanines (5-8) were investigated for their ability to inhibit enzymes. They exhibited a highly potent inhibition effect on human carbonic anhydrase I and II (hCA I and II) and α-glycosidase (α-Gly) enzymes. Ki values are in the range of 2.60 ± 9.87 to 11.53 ± 6.92 µM, 3.35 ± 0.53 to 15.47 ± 1.20 µM, and 28.60 ± 4.82 to 40.58 ± 7.37 nM, respectively. The calculations of the studied molecule at the B3LYP, HF, and M062X levels in the 6-31G basis sets were made using the Gaussian package program. Afterward, the interactions occurring in the docking calculation against a protein that is the crystal structure of hCA I (PDB ID: 2CAB), the crystal structure of hCA II (PDB ID: 5AML), and the crystal structure of α-Gly (PDB ID: 1R47), were examined. Following that, Protein-Ligand Interaction Profiler (PLIP) analysis was used to look at the interactions that occurred during the docking calculation in further detail.

Reentrant semiconducting behavior in polymerized fullerite structures with increasing sp3-carbon content.

The electronic behavior of polymerized fullerite structures, ranging from one-dimensional to three-dimensional polymers, was studied using density functional theory with the hybrid Heyd-Scuseria-Ernzerhof (HSE) functional and a 6-31G(d,p) basis set. The bandgap across these structures decreases with the rise of sp3-carbon content until metallic behavior is observed. A further increase induces a reopening of the bandgap, revealing a reentrant semiconducting behavior in this class of materials. This behavior is understood in terms of the new electronic states originated by polymeric bonding and the effect of the volume reduction on the dispersion of sp2-states. This study highlights the fullerite polymers as a magnificent platform to tune electronic properties.

Theoretical studies and temperature-dependent Raman spectroscopy of Schiff's bases 5O.12 liquid crystalline compound

Comparative Raman spectra and different physical properties of 5O.12 liquid crystal compound using density functional theory is studied in this article. The molecular structure of 5O.12 liquid crystal has been optimized by using density functional theory (DFT). The Raman spectroscopy examination is critical for observing the properties and behavior of liquid crystals. 5O.12 is a Schiff-based with several liquid crystalline phases, including Nematic, Smectic A, and Smectic B. The phases of the liquid crystal vary as the temperature changes, providing essential information about the liquid crystal's molecular arrangement. The density functional theory with standard basis set 6–31 G (d, p) paired with B3LYP functional is used to study the theoretical Raman spectra and various physical properties. Theoretical details of Raman spectra give excellent agreement with experimental results. Experimental Raman spectra were examined with temperature in all of the observed phases in this article. Comparative Raman studies at different temperatures help in understanding thermodynamic and structural behavior of molecular systems. Peak positions and line width are investigated further as temperature varies, yielding precise and significant information about the molecule's ordering and behaviour. DFT is used to do research on different physical properties like HOMO LUMO, relative energy gaps and various thermochemical properties such as entropy, heat capacity, thermal energy. These characteristics give an understanding of the stability of molecules, as well as the optical properties and structure of liquid crystalline compounds.