Abstract
The complete mitochondrial genome of the Barcheek trevally, Carangoides plagiotaenia Bleeker, 1857 from Beqa lagoon, Fiji Islands, was determined by high-throughput sequencing (HTS). Its mitogenome (16,551 bp) contained the typical 37 genes, including 13 protein-coding genes (PCGs), 2 ribosomal RNAs, 22 tRNAs, along with two non-coding regions: control region (D-loop) and the origin of light-strand replication (OL). In its mitogenome, one unusual start codon (GTG) was identified in COI and incomplete stop codons (TA-/T–) were predicted in seven PCGs including ND2, COII, ATP6, COIII, ND3, ND4 and CytB. The phylogenetic tree revealed that C. plagiotaenia is sister to C. bajad with 88.75% nucleotide identity in 13 PCGs and 90.49% in the complete mitogenomes.
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